RchiOBHm_Chr4g0433461

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0014950
Physical Location & Seq
Forward (+)
57583401 .. 57585928
2528 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40197

Sequence Viewer

Length: 1164 bp
ATGGAAACTCTGTTTCTAAGACATGTTGCCTTTGGGCTTGTGATTTGGACAACAATGCTTCTGAGTCCTAGCACTTGTTCAAAACCATGCTCTTTTCCGGCCATATTCAACTTTGGAGACTCAAACTCAGACACCGGGGGCCTGTCCGCAGCGTTTGGACAAGCTCCTTATCCCAATGGAGAGACATTTTTTGGAACACCTTCGGGACGTTATTCCGATGGCCGTCTTATAATTGATTTCATAGCTGAAAGCTTGAGATTACCTCATCTGAGTGCATTTTTGGACTCGGTTGGATCAAACTTCAGCCACGGAGCGAATTTCGCAACTGCAGGATCAACCATCAGACCCCCAAACATGACCATCCAATATGGACCTAGTCCCATTTCCTTAGATGTGCAGTATGTTGAATTCTCAAACTTCCACACGAGATCGCAAATTTATCGCAAAAAAGGAGAGTTATATGAGAAACTGCTTCCCAGAGTAGAGTACTTTTCTCGAGCACTTTATACCTTTGACATTGGCCAAAATGATCTCACTGCTGGTTACAAGCTTAACATGACCATTGAACAAATAAAGGCCTACGTTCCAGATGTGCTAGGCCAGTTCTCTAATGTCATCAAGGATATATATAATGAAGGGGGAAGAACATTTTGGATCCACAATACAGGCCCTGTGGGCTGCTACCCCTATATTCTGGATCGGTTCTTTGTCAACCCAGCCCAATATAATAAGTATGGGTGTGCAAGTCCGTTTAATGATGTGGCCCAATTTTTCAACCAAAGATTAAAGGAAGCTGTGGTTCAGCTTGAGCAAGATCTTCCCATGGCTGCATTCACCTATGTGGATATCTACTCACTAAAGTACACCCTCATTACTCAAGCCAAGAAATATGGATTTGAGAAGCCACTCGTAGCATGTTGTGGTCGTGGTGGGAAATACAATTACAACCTACATGAGAAGTGTGGGGCGAAGAAGACTATCAACGGCAAAGAGGTAGTAATCGCTAACTCGTGCAAGGATCCAATGACTAGGATTAATTGGGACGGGACGCATTTCACTGAGGCTGCCAACAAATGGATATTTCAACAAATTTTGAATGGCTCCTTTTCAGATCCACCAAACCCGTTGGAAATGGCTTGTCAAAGAAGGAAAACAAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016298 GO:0016787 GO:0016788
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

387

Amino Acids

43.53

Weight (kDa)

8.69

Isoelectric Point (pI)

26.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 35 - 364 7.5e-46 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26430
fragaria_vesca FvH4_4g26020
malus_domestica MD16G1100400.v1.1
prunus_persica Prupe.1G246600_v2.0.a1 Prupe.1G246600_v2.0.a1
pyrus_communis pycom16g08510
rosa_chinensis RchiOBHm_Chr4g0433461
rosa_laevigata RLG00000006751
rosa_multiflora Rmu_sc0000312.1_g000001
rosa_roxburghii Rroxscaffold_5G00375000
rosa_rugosa Rorug04G0269000
rosa_samantha Rh4BG331600 Rh4CG346900 Rh4DG327900
rosa_wichuraiana Rw0G020090 Rw4G028040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 230
AccB7I CCANNNNNTGG 1 cut(s) 1074
AciI CCGC 1 cut(s) 147
AclWI GGATC 8 cut(s) 301, 340, 649, 662, 705, 1013, 1026, 1106
AcoI YGGCCR 3 cut(s) 99, 220, 520
AcsI RAATTY 4 cut(s) 316, 407, 435, 1089
AcuI CTGAAG 1 cut(s) 286
AfaI GTAC 2 cut(s) 488, 863
AfiI CCNNNNNNNGG 1 cut(s) 1074
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 7 cut(s) 81, 109, 407, 566, 775, 1085, 1096
AjuI GAANNNNNNNTTGG 2 cut(s) 634, 666
AleI CACNNNNGTG 1 cut(s) 839
AluBI AGCT 6 cut(s) 164, 245, 252, 550, 794, 805
AluI AGCT 6 cut(s) 164, 245, 252, 550, 794, 805
Alw21I GWGCWC 1 cut(s) 502
Alw26I GTCTC 2 cut(s) 111, 176
AlwI GGATC 8 cut(s) 301, 340, 649, 662, 705, 1013, 1026, 1106
AlwNI CAGNNNCTG 1 cut(s) 671
Ama87I CYCGRG 1 cut(s) 495
AoxI GGCC 8 cut(s) 99, 139, 220, 520, 576, 598, 667, 762
ApeKI GCWGC 4 cut(s) 149, 678, 827, 1064
ApoI RAATTY 4 cut(s) 316, 407, 435, 1089
AseI ATTAAT 1 cut(s) 1035
Asp700I GAANNNNTTC 1 cut(s) 199
AspS9I GGNCC 4 cut(s) 139, 371, 668, 763
AsuC2I CCSGG 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 826
AvaI CYCGRG 1 cut(s) 495
AvaII GGWCC 1 cut(s) 371
BalI TGGCCA 1 cut(s) 522
BamHI GGATCC 2 cut(s) 654, 1018
BauI CACGAG 2 cut(s) 424, 1009
BbsI GAAGAC 1 cut(s) 980
Bbv12I GWGCWC 1 cut(s) 502
BbvI GCAGC 4 cut(s) 161, 665, 814, 1051
BccI CCATC 3 cut(s) 212, 347, 368
BceAI ACGGC 2 cut(s) 207, 1000
BcgI CGANNNNNNTGC 2 cut(s) 422, 456
BcnI CCSGG 1 cut(s) 136
BcoDI GTCTC 2 cut(s) 111, 176
BfaI CTAG 4 cut(s) 69, 375, 596, 1029
BfmI CTRYAG 1 cut(s) 327
BglI GCCNNNNNGGC 1 cut(s) 675
BglII AGATCT 1 cut(s) 814
BisI GCNGC 4 cut(s) 150, 679, 828, 1065
BlsI GCNGC 4 cut(s) 151, 680, 829, 1066
BmcAI AGTACT 1 cut(s) 488
Bme1390I CCNGG 1 cut(s) 136
Bme18I GGWCC 1 cut(s) 371
BmeT110I CYCGRG 1 cut(s) 495
BmgT120I GGNCC 4 cut(s) 139, 371, 668, 763
BmiI GGNNCC 4 cut(s) 140, 656, 1020, 1102
BmrFI CCNGG 1 cut(s) 136
BpiI GAAGAC 1 cut(s) 980
BplI GAGNNNNNCTC 2 cut(s) 247, 279
BpuEI CTTGAG 3 cut(s) 274, 827, 861
BpuMI CCSGG 1 cut(s) 136
BsaJI CCNNGG 3 cut(s) 135, 307, 822
Bsc4I CCNNNNNNNGG 1 cut(s) 1074
Bse1I ACTGG 1 cut(s) 601
BseDI CCNNGG 3 cut(s) 135, 307, 822
BseGI GGATG 1 cut(s) 360
BseLI CCNNNNNNNGG 1 cut(s) 1074
BseMII CTCAG 4 cut(s) 53, 141, 260, 1050
BseNI ACTGG 1 cut(s) 601
BseXI GCAGC 4 cut(s) 161, 665, 814, 1051
BseYI CCCAGC 1 cut(s) 715
BsgI GTGCAG 1 cut(s) 416
BshFI GGCC 8 cut(s) 101, 141, 222, 522, 578, 600, 669, 764
BsiHKAI GWGCWC 1 cut(s) 502
BsiHKCI CYCGRG 1 cut(s) 495
BsiSI CCGG 2 cut(s) 98, 135
BslFI GGGAC 4 cut(s) 219, 363, 1055, 1060
BslI CCNNNNNNNGG 1 cut(s) 1074
BsmAI GTCTC 2 cut(s) 111, 176
BsmFI GGGAC 4 cut(s) 219, 363, 1055, 1060
BsmI GAATGC 1 cut(s) 830
BsnI GGCC 8 cut(s) 101, 141, 222, 522, 578, 600, 669, 764
BsoBI CYCGRG 1 cut(s) 495
Bsp1286I GDGCHC 1 cut(s) 502
Bsp143I GATC 9 cut(s) 293, 332, 428, 529, 654, 697, 814, 1018, 1111
Bsp19I CCATGG 1 cut(s) 822
BspACI CCGC 1 cut(s) 147
BspANI GGCC 8 cut(s) 101, 141, 222, 522, 578, 600, 669, 764
BspCNI CTCAG 4 cut(s) 54, 140, 261, 1051
BspLI GGNNCC 4 cut(s) 140, 656, 1020, 1102
BspMAI CTGCAG 1 cut(s) 331
BspPI GGATC 8 cut(s) 301, 340, 649, 662, 705, 1013, 1026, 1106
BsrI ACTGG 1 cut(s) 601
BssECI CCNNGG 3 cut(s) 135, 307, 822
BssMI GATC 9 cut(s) 293, 332, 428, 529, 654, 697, 814, 1018, 1111
BssSI CACGAG 2 cut(s) 424, 1009
BssT1I CCWWGG 1 cut(s) 822
Bst2BI CACGAG 2 cut(s) 424, 1009
BstDEI CTNAG 6 cut(s) 17, 62, 127, 269, 388, 1059
BstDSI CCRYGG 2 cut(s) 307, 822
BstF5I GGATG 1 cut(s) 360
BstKTI GATC 9 cut(s) 296, 335, 431, 532, 657, 700, 817, 1021, 1114
BstMAI GTCTC 2 cut(s) 111, 176
BstMBI GATC 9 cut(s) 293, 332, 428, 529, 654, 697, 814, 1018, 1111
BstMWI GCNNNNNNNGC 2 cut(s) 320, 675
BstNSI RCATGY 2 cut(s) 26, 918
BstSCI CCNGG 1 cut(s) 134
BstSFI CTRYAG 1 cut(s) 327
BstV1I GCAGC 4 cut(s) 161, 665, 814, 1051
BstV2I GAAGAC 1 cut(s) 980
BstX2I RGATCY 4 cut(s) 654, 814, 1018, 1111
BstYI RGATCY 4 cut(s) 654, 814, 1018, 1111
BsuRI GGCC 8 cut(s) 101, 141, 222, 522, 578, 600, 669, 764
BtgI CCRYGG 2 cut(s) 307, 822
BtsCI GGATG 1 cut(s) 360
BtsI GCAGTG 1 cut(s) 534
BtsIMutI CAGTG 2 cut(s) 534, 1056
CaiI CAGNNNCTG 1 cut(s) 671
Cfr13I GGNCC 4 cut(s) 139, 371, 668, 763
CseI GACGC 1 cut(s) 1057
Csp6I GTAC 2 cut(s) 487, 862
CviAII CATG 7 cut(s) 23, 87, 355, 556, 823, 915, 953
CviQI GTAC 2 cut(s) 487, 862
DdeI CTNAG 6 cut(s) 17, 62, 127, 269, 388, 1059
DpnI GATC 9 cut(s) 295, 334, 430, 531, 656, 699, 816, 1020, 1113
DpnII GATC 9 cut(s) 293, 332, 428, 529, 654, 697, 814, 1018, 1111
EaeI YGGCCR 3 cut(s) 99, 220, 520
Eco130I CCWWGG 1 cut(s) 822
Eco147I AGGCCT 1 cut(s) 578
Eco32I GATATC 1 cut(s) 847
Eco47I GGWCC 1 cut(s) 371
Eco57I CTGAAG 1 cut(s) 286
Eco88I CYCGRG 1 cut(s) 495
EcoO109I RGGNCCY 2 cut(s) 139, 668
EcoRI GAATTC 1 cut(s) 407
EcoRV GATATC 1 cut(s) 847
EcoT14I CCWWGG 1 cut(s) 822
ErhI CCWWGG 1 cut(s) 822
FaeI CATG 7 cut(s) 26, 90, 358, 559, 826, 918, 956
FaqI GGGAC 4 cut(s) 219, 363, 1055, 1060
FatI CATG 7 cut(s) 22, 86, 354, 555, 822, 914, 952
Fnu4HI GCNGC 4 cut(s) 150, 679, 828, 1065
FokI GGATG 1 cut(s) 347
Fsp4HI GCNGC 4 cut(s) 150, 679, 828, 1065
FspBI CTAG 4 cut(s) 69, 375, 596, 1029
GluI GCNGC 4 cut(s) 150, 679, 828, 1065
GsaI CCCAGC 1 cut(s) 719
HaeIII GGCC 8 cut(s) 101, 141, 222, 522, 578, 600, 669, 764
HapII CCGG 2 cut(s) 98, 135
HgaI GACGC 1 cut(s) 1057
Hin1II CATG 7 cut(s) 26, 90, 358, 559, 826, 918, 956
HincII GTYRAC 1 cut(s) 712
HindII GTYRAC 1 cut(s) 712
HindIII AAGCTT 2 cut(s) 250, 548
HinfI GANTC 3 cut(s) 64, 119, 284
HpaII CCGG 2 cut(s) 98, 135
HphI GGTGA 1 cut(s) 826
Hpy166II GTNNAC 2 cut(s) 712, 864
Hpy188I TCNGA 6 cut(s) 63, 130, 217, 270, 344, 1111
Hpy188III TCNNGA 4 cut(s) 204, 495, 587, 695
Hpy8I GTNNAC 2 cut(s) 712, 864
HpyAV CCTTC 3 cut(s) 210, 629, 1140
HpyCH4IV ACGT 2 cut(s) 208, 582
HpyCH4V TGCA 6 cut(s) 275, 329, 397, 743, 830, 1014
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 675
HpyF3I CTNAG 6 cut(s) 17, 62, 127, 269, 388, 1059
HpySE526I ACGT 2 cut(s) 208, 582
Hsp92II CATG 7 cut(s) 26, 90, 358, 559, 826, 918, 956
Kzo9I GATC 9 cut(s) 293, 332, 428, 529, 654, 697, 814, 1018, 1111
LmnI GCTCC 3 cut(s) 169, 311, 1106
Lsp1109I GCAGC 4 cut(s) 161, 665, 814, 1051
MaeI CTAG 4 cut(s) 69, 375, 596, 1029
MaeII ACGT 2 cut(s) 208, 582
MaeIII GTNAC 1 cut(s) 542
MalI GATC 9 cut(s) 295, 334, 430, 531, 656, 699, 816, 1020, 1113
MboI GATC 9 cut(s) 293, 332, 428, 529, 654, 697, 814, 1018, 1111
MboII GAAGA 4 cut(s) 654, 809, 982, 985
MflI RGATCY 4 cut(s) 654, 814, 1018, 1111
MhlI GDGCHC 1 cut(s) 502
MlsI TGGCCA 1 cut(s) 522
MluCI AATT 8 cut(s) 231, 316, 407, 435, 767, 940, 1036, 1089
MluNI TGGCCA 1 cut(s) 522
MlyI GAGTC 3 cut(s) 73, 113, 278
MmeI TCCRAC 2 cut(s) 271, 1107
MnlI CCTC 4 cut(s) 273, 878, 985, 1054
Mox20I TGGCCA 1 cut(s) 522
MroXI GAANNNNTTC 1 cut(s) 199
MscI TGGCCA 1 cut(s) 522
MseI TTAA 4 cut(s) 552, 753, 785, 1035
MslI CAYNNNNRTG 2 cut(s) 270, 839
Msp20I TGGCCA 1 cut(s) 522
MspI CCGG 2 cut(s) 98, 135
MspR9I CCNGG 1 cut(s) 136
Mva1269I GAATGC 1 cut(s) 830
MwoI GCNNNNNNNGC 2 cut(s) 320, 675
NciI CCSGG 1 cut(s) 136
NcoI CCATGG 1 cut(s) 822
NdeII GATC 9 cut(s) 293, 332, 428, 529, 654, 697, 814, 1018, 1111
NlaIII CATG 7 cut(s) 26, 90, 358, 559, 826, 918, 956
NlaIV GGNNCC 4 cut(s) 140, 656, 1020, 1102
NspI RCATGY 2 cut(s) 26, 918
OliI CACNNNNGTG 1 cut(s) 839
PaeR7I CTCGAG 1 cut(s) 495
PceI AGGCCT 1 cut(s) 578
PciI ACATGT 1 cut(s) 22
PctI GAATGC 1 cut(s) 830
PdmI GAANNNNTTC 1 cut(s) 199
PflFI GACNNNGTC 1 cut(s) 375
PflMI CCANNNNNTGG 1 cut(s) 1074
PkrI GCNGC 4 cut(s) 151, 680, 829, 1066
PleI GAGTC 3 cut(s) 72, 113, 278
PpsI GAGTC 3 cut(s) 72, 113, 278
PscI ACATGT 1 cut(s) 22
PshBI ATTAAT 1 cut(s) 1035
PsiI TTATAA 1 cut(s) 230
PspFI CCCAGC 1 cut(s) 715
PspN4I GGNNCC 4 cut(s) 140, 656, 1020, 1102
PspPI GGNCC 4 cut(s) 139, 371, 668, 763
PstI CTGCAG 1 cut(s) 331
PstNI CAGNNNCTG 1 cut(s) 671
PsuI RGATCY 4 cut(s) 654, 814, 1018, 1111
PsyI GACNNNGTC 1 cut(s) 375
RsaI GTAC 2 cut(s) 488, 863
RsaNI GTAC 2 cut(s) 487, 862
RseI CAYNNNNRTG 2 cut(s) 270, 839
SaqAI TTAA 4 cut(s) 552, 753, 785, 1035
SatI GCNGC 4 cut(s) 150, 679, 828, 1065
Sau3AI GATC 9 cut(s) 293, 332, 428, 529, 654, 697, 814, 1018, 1111
Sau96I GGNCC 4 cut(s) 139, 371, 668, 763
ScaI AGTACT 1 cut(s) 488
SchI GAGTC 3 cut(s) 73, 113, 278
ScrFI CCNGG 1 cut(s) 136
SduI GDGCHC 1 cut(s) 502
SfcI CTRYAG 1 cut(s) 327
Sfr274I CTCGAG 1 cut(s) 495
SinI GGWCC 1 cut(s) 371
SlaI CTCGAG 1 cut(s) 495
SmiMI CAYNNNNRTG 2 cut(s) 270, 839
SmlI CTYRAG 4 cut(s) 253, 495, 806, 876
SmoI CTYRAG 4 cut(s) 253, 495, 806, 876
Sse9I AATT 8 cut(s) 231, 316, 407, 435, 767, 940, 1036, 1089
SseBI AGGCCT 1 cut(s) 578
SsiI CCGC 1 cut(s) 147
SspMI CTAG 4 cut(s) 69, 375, 596, 1029
StuI AGGCCT 1 cut(s) 578
StyD4I CCNGG 1 cut(s) 134
StyI CCWWGG 1 cut(s) 822
TaiI ACGT 2 cut(s) 211, 585
TaqI TCGA 1 cut(s) 496
TasI AATT 8 cut(s) 231, 316, 407, 435, 767, 940, 1036, 1089
TatI WGTACW 2 cut(s) 486, 861
Tru1I TTAA 4 cut(s) 552, 753, 785, 1035
Tru9I TTAA 4 cut(s) 552, 753, 785, 1035
TscAI CASTG 2 cut(s) 541, 1063
TseI GCWGC 4 cut(s) 149, 678, 827, 1064
TspDTI ATGAA 2 cut(s) 229, 648
TspGWI ACGGA 2 cut(s) 324, 738
TspRI CASTG 2 cut(s) 541, 1063
Tth111I GACNNNGTC 1 cut(s) 375
Van91I CCANNNNNTGG 1 cut(s) 1074
VpaK11BI GGWCC 1 cut(s) 371
VspI ATTAAT 1 cut(s) 1035
XapI RAATTY 4 cut(s) 316, 407, 435, 1089
XceI RCATGY 2 cut(s) 26, 918
XhoI CTCGAG 1 cut(s) 495
XmnI GAANNNNTTC 1 cut(s) 199
XspI CTAG 4 cut(s) 69, 375, 596, 1029
ZrmI AGTACT 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.