AT3G26960

pollen Ole e 1 allergen and extensin family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015014
Physical Location & Seq
Reverse (-)
9944466 .. 9945861
1396 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26960.1

Sequence Viewer

Length: 525 bp
ATGACGAAGAAATCACTGACAATGTTTCTTTTTATACTTCTGCAATTTCTGCTCGTAAACTCTCTATCTTCAAAGCATTCATCACCCAAACCAAAACCAGATGCAGAAATCACTATAATGGGTTTTGTTTACTGCGATGTTTGCTCCAAAAACAGTTTCTCTAAACACAGTTACTTCATGTCCGGTGTGGAAGTGAGGATAGTCTGCCGATTCAAAGCAGCTTCGTCAACAACGACAGAGACTATAACATTCTCTGCAAACAGAACCACCAACGAGTTTGGACTGTACAAGGTAGCCATATCTTCTCTAGATTGTGCTGATGTGGACAGTCTCGCGAGTTCTTGTCAAGCGAGTTTGATTGGAAGAAAAAACTTCTCCGATTCTTCTTGCAACATTCCTGGTTATAGAACCACTACGGATCAGGTCTTGTTTAAGTCTCAACAGTCTAATTCCTGTGTTTATGGATTCAATGCTTTGAATTTCAGACCGTTCAAGAGGGATCTTGCCTTGTGTGGCAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

174

Amino Acids

19.28

Weight (kDa)

9.25

Isoelectric Point (pI)

33.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 39 - 137 8.4e-18 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015014)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26960 AT5G41050
fragaria_vesca FvH4_6g53930
malus_domestica MD17G1011000.v1.1
prunus_persica Prupe.3G309900_v2.0.a1
pyrus_communis pycom17g00570
rosa_chinensis RchiOBHm_Chr2g0176091
rosa_laevigata RLG00000022380
rosa_multiflora Rmu_sc0009879.1_g000002
rosa_roxburghii Rroxscaffold_2G00076780
rosa_rugosa Rorug02G0590400
rosa_samantha Rh2AG669200 Rh2BG680800 Rh2CG643700 Rh2DG694500
rosa_wichuraiana Rw2G054890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 335
AclWI GGATC 2 cut(s) 426, 507
AcsI RAATTY 1 cut(s) 478
AfaI GTAC 1 cut(s) 287
AgsI TTSAA 5 cut(s) 72, 214, 469, 478, 493
AjnI CCWGG 1 cut(s) 397
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
Alw26I GTCTC 3 cut(s) 233, 335, 441
AlwI GGATC 2 cut(s) 426, 507
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 478
AsuHPI GGTGA 1 cut(s) 75
BbvI GCAGC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 399
BcoDI GTCTC 3 cut(s) 233, 335, 441
BfaI CTAG 1 cut(s) 308
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 399
BmrFI CCNGG 1 cut(s) 399
BmsI GCATC 1 cut(s) 91
BsaWI WCCGGW 1 cut(s) 182
BseBI CCWGG 1 cut(s) 399
BseXI GCAGC 1 cut(s) 230
Bsh1236I CGCG 1 cut(s) 335
BsiSI CCGG 1 cut(s) 183
BsmAI GTCTC 3 cut(s) 233, 335, 441
BsmI GAATGC 1 cut(s) 76
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 2 cut(s) 418, 499
Bsp68I TCGCGA 1 cut(s) 335
BspFNI CGCG 1 cut(s) 335
BspPI GGATC 2 cut(s) 426, 507
BsrGI TGTACA 1 cut(s) 285
BssMI GATC 2 cut(s) 418, 499
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 6 cut(s) 155, 170, 285, 329, 444, 489
BstAPI GCANNNNNTGC 1 cut(s) 49
BstAUI TGTACA 1 cut(s) 285
BstFNI CGCG 1 cut(s) 335
BstKTI GATC 2 cut(s) 421, 502
BstMAI GTCTC 3 cut(s) 233, 335, 441
BstMBI GATC 2 cut(s) 418, 499
BstMWI GCNNNNNNNGC 2 cut(s) 49, 141
BstNI CCWGG 1 cut(s) 399
BstSCI CCNGG 1 cut(s) 397
BstUI CGCG 1 cut(s) 335
BstV1I GCAGC 1 cut(s) 230
BstX2I RGATCY 1 cut(s) 499
BstYI RGATCY 1 cut(s) 499
BtgZI GCGATG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 14
BtuMI TCGCGA 1 cut(s) 335
Csp6I GTAC 1 cut(s) 286
CviAII CATG 1 cut(s) 178
CviJI RGCY 2 cut(s) 221, 296
CviKI_1 RGCY 2 cut(s) 221, 296
CviQI GTAC 1 cut(s) 286
DpnI GATC 2 cut(s) 420, 501
DpnII GATC 2 cut(s) 418, 499
EcoRII CCWGG 1 cut(s) 397
FaeI CATG 1 cut(s) 181
FaiI YATR 7 cut(s) 35, 116, 179, 245, 299, 405, 462
FatI CATG 1 cut(s) 177
Fnu4HI GCNGC 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 1 cut(s) 308
GluI GCNGC 1 cut(s) 219
HapII CCGG 1 cut(s) 183
Hin1II CATG 1 cut(s) 181
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HinfI GANTC 3 cut(s) 210, 380, 465
HpaII CCGG 1 cut(s) 183
HphI GGTGA 1 cut(s) 75
Hpy166II GTNNAC 4 cut(s) 58, 130, 228, 325
Hpy188I TCNGA 2 cut(s) 379, 485
Hpy188III TCNNGA 3 cut(s) 308, 334, 493
Hpy8I GTNNAC 4 cut(s) 58, 130, 228, 325
HpyCH4III ACNGT 6 cut(s) 155, 170, 285, 329, 444, 489
HpyCH4V TGCA 4 cut(s) 43, 104, 257, 390
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 141
Hsp92II CATG 1 cut(s) 181
Kzo9I GATC 2 cut(s) 418, 499
LmnI GCTCC 1 cut(s) 149
LpnPI CCDG 6 cut(s) 111, 196, 384, 407, 411, 466
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 1 cut(s) 91
MaeI CTAG 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 170
MalI GATC 2 cut(s) 420, 501
MboI GATC 2 cut(s) 418, 499
MboII GAAGA 5 cut(s) 19, 60, 294, 375, 375
MflI RGATCY 1 cut(s) 499
MluCI AATT 3 cut(s) 44, 448, 478
MnlI CCTC 2 cut(s) 189, 489
MseI TTAA 1 cut(s) 432
MslI CAYNNNNRTG 1 cut(s) 116
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 399
Mva1269I GAATGC 1 cut(s) 76
MvaI CCWGG 1 cut(s) 399
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 2 cut(s) 49, 141
NdeII GATC 2 cut(s) 418, 499
NlaIII CATG 1 cut(s) 181
NruI TCGCGA 1 cut(s) 335
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PctI GAATGC 1 cut(s) 76
PfeI GAWTC 3 cut(s) 210, 380, 465
PkrI GCNGC 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 397
PspGI CCWGG 1 cut(s) 397
PsuI RGATCY 1 cut(s) 499
RruI TCGCGA 1 cut(s) 335
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 116
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 2 cut(s) 418, 499
ScrFI CCNGG 1 cut(s) 399
SetI ASST 3 cut(s) 223, 294, 426
SfaNI GCATC 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 116
Sse9I AATT 3 cut(s) 44, 448, 478
SspMI CTAG 1 cut(s) 308
StyD4I CCNGG 1 cut(s) 397
TaaI ACNGT 6 cut(s) 155, 170, 285, 329, 444, 489
TasI AATT 3 cut(s) 44, 448, 478
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 3 cut(s) 210, 380, 465
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 1 cut(s) 21
TseI GCWGC 1 cut(s) 218
TspDTI ATGAA 2 cut(s) 69, 166
TspGWI ACGGA 1 cut(s) 431
TspRI CASTG 1 cut(s) 21
XapI RAATTY 1 cut(s) 478
XbaI TCTAGA 1 cut(s) 307
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.