AT5G41050

pollen Ole e 1 allergen and extensin family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015014
Physical Location & Seq
Reverse (-)
16433243 .. 16434458
1216 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41050.1

Sequence Viewer

Length: 519 bp
ATGAAGCAGAAACTGATAATGCTTCTGTTACTTCTGCAACTTCTGTCCTTAAACTCTCTGTCTCTGAAACATTCTTCAGCCAAACCAAATGGAAAGATCACTGTAATGGGTCTTGTTTACTGCGACGTCTGCTCCAACAACAGTTTCTCCAATCACAGCTATTTCATTCCCGGTGTGGAAGTGAGAATAATCTGCAGATTCAATTCAGCTTCATCGAGAACTAGAGAGATGATTACGTTCTCTGCAAATCGAACCACAAATGAGCTTGGACTCTACAAGCTAGACATAACGTCTCTGGAAGGCGTTGCTTGCGCCGCTGAAGCAAAGAAAGATTCTCTAATGGCTTCCTGTCAAGCAAGCTTGATCGGTAGGTCCAAAGATTCCTGCAACGTTCCTGGCTTCAGAACTACAACGGAGCAGGTTGTGTTTAAGTCCAAGATATCTAATCTCTGTGTCTATGGGTTTACTGCTTTAAATTTCAGACCTTTAGAGAAGAATCTTCATTTGTGTGGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

172

Amino Acids

18.97

Weight (kDa)

9.39

Isoelectric Point (pI)

24.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 35 - 134 2.8e-18 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015014)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26960 AT5G41050
fragaria_vesca FvH4_6g53930
malus_domestica MD17G1011000.v1.1
prunus_persica Prupe.3G309900_v2.0.a1
pyrus_communis pycom17g00570
rosa_chinensis RchiOBHm_Chr2g0176091
rosa_laevigata RLG00000022380
rosa_multiflora Rmu_sc0009879.1_g000002
rosa_roxburghii Rroxscaffold_2G00076780
rosa_rugosa Rorug02G0590400
rosa_samantha Rh2AG669200 Rh2BG680800 Rh2CG643700 Rh2DG694500
rosa_wichuraiana Rw2G054890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 129
Acc36I ACCTGC 1 cut(s) 409
AciI CCGC 1 cut(s) 315
AclI AACGTT 1 cut(s) 390
AcsI RAATTY 1 cut(s) 475
AcuI CTGAAG 3 cut(s) 60, 339, 385
AcyI GRCGYC 1 cut(s) 126
AgsI TTSAA 1 cut(s) 202
AhdI GACNNNNNGTC 1 cut(s) 289
AjnI CCWGG 1 cut(s) 394
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AluBI AGCT 5 cut(s) 159, 209, 265, 280, 360
AluI AGCT 5 cut(s) 159, 209, 265, 280, 360
Alw26I GTCTC 2 cut(s) 66, 297
AlwNI CAGNNNCTG 1 cut(s) 13
ApoI RAATTY 1 cut(s) 475
AspLEI GCGC 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 372
AsuC2I CCSGG 1 cut(s) 171
AvaII GGWCC 1 cut(s) 372
BciT130I CCWGG 1 cut(s) 396
BcnI CCSGG 1 cut(s) 171
BcoDI GTCTC 2 cut(s) 66, 297
BfaI CTAG 2 cut(s) 222, 281
BfmI CTRYAG 1 cut(s) 193
BfuAI ACCTGC 1 cut(s) 409
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
Bme1390I CCNGG 2 cut(s) 171, 396
Bme18I GGWCC 1 cut(s) 372
BmeRI GACNNNNNGTC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 372
BmrFI CCNGG 2 cut(s) 171, 396
BpuMI CCSGG 1 cut(s) 171
BsaHI GRCGYC 1 cut(s) 126
BsaXI ACNNNNNCTCC 4 cut(s) 116, 131, 146, 161
BseBI CCWGG 1 cut(s) 396
BsiSI CCGG 1 cut(s) 171
BsmAI GTCTC 2 cut(s) 66, 297
BsmBI CGTCTC 1 cut(s) 297
Bsp143I GATC 2 cut(s) 96, 363
BspACI CCGC 1 cut(s) 315
BspMAI CTGCAG 1 cut(s) 197
BspMI ACCTGC 1 cut(s) 409
BssMI GATC 2 cut(s) 96, 363
BssNI GRCGYC 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 396
Bst4CI ACNGT 2 cut(s) 103, 143
BstACI GRCGYC 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 310, 358
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 2 cut(s) 99, 366
BstMAI GTCTC 2 cut(s) 66, 297
BstMBI GATC 2 cut(s) 96, 363
BstMWI GCNNNNNNNGC 4 cut(s) 129, 309, 314, 320
BstNI CCWGG 1 cut(s) 396
BstSCI CCNGG 2 cut(s) 169, 394
BstSFI CTRYAG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 99
BveI ACCTGC 1 cut(s) 409
Cac8I GCNNGC 2 cut(s) 310, 358
CaiI CAGNNNCTG 1 cut(s) 13
CfoI GCGC 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 372
CviJI RGCY 8 cut(s) 80, 159, 209, 265, 280, 344, 360, 399
CviKI_1 RGCY 8 cut(s) 80, 159, 209, 265, 280, 344, 360, 399
DpnI GATC 2 cut(s) 98, 365
DpnII GATC 2 cut(s) 96, 363
DraI TTTAAA 1 cut(s) 474
DriI GACNNNNNGTC 1 cut(s) 289
Eam1105I GACNNNNNGTC 1 cut(s) 289
Eco32I GATATC 1 cut(s) 441
Eco47I GGWCC 1 cut(s) 372
Eco57I CTGAAG 3 cut(s) 60, 339, 385
EcoRII CCWGG 1 cut(s) 394
EcoRV GATATC 1 cut(s) 441
Esp3I CGTCTC 1 cut(s) 297
FaiI YATR 2 cut(s) 287, 459
Fnu4HI GCNGC 1 cut(s) 315
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 2 cut(s) 222, 281
GlaI GCGC 1 cut(s) 313
GluI GCNGC 1 cut(s) 315
HapII CCGG 1 cut(s) 171
HhaI GCGC 1 cut(s) 314
Hin1I GRCGYC 1 cut(s) 126
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HindIII AAGCTT 1 cut(s) 358
HinfI GANTC 5 cut(s) 198, 270, 332, 380, 496
HpaII CCGG 1 cut(s) 171
Hpy166II GTNNAC 2 cut(s) 118, 465
Hpy188I TCNGA 3 cut(s) 66, 404, 482
Hpy188III TCNNGA 2 cut(s) 216, 296
Hpy8I GTNNAC 2 cut(s) 118, 465
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 293
HpyCH4III ACNGT 2 cut(s) 103, 143
HpyCH4IV ACGT 4 cut(s) 126, 236, 290, 390
HpyCH4V TGCA 4 cut(s) 37, 195, 245, 387
HpyF10VI GCNNNNNNNGC 4 cut(s) 129, 309, 314, 320
HpySE526I ACGT 4 cut(s) 126, 236, 290, 390
Hsp92I GRCGYC 1 cut(s) 126
HspAI GCGC 1 cut(s) 312
Kzo9I GATC 2 cut(s) 96, 363
LmnI GCTCC 2 cut(s) 137, 415
LpnPI CCDG 7 cut(s) 184, 281, 361, 381, 397, 404, 408
MaeI CTAG 2 cut(s) 222, 281
MaeII ACGT 4 cut(s) 126, 236, 290, 390
MaeIII GTNAC 1 cut(s) 27
MalI GATC 2 cut(s) 98, 365
MboI GATC 2 cut(s) 96, 363
MboII GAAGA 3 cut(s) 66, 491, 505
MluCI AATT 2 cut(s) 202, 475
MlyI GAGTC 1 cut(s) 264
MmeI TCCRAC 1 cut(s) 159
MseI TTAA 3 cut(s) 50, 429, 473
MslI CAYNNNNRTG 2 cut(s) 104, 507
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 2 cut(s) 171, 396
MvaI CCWGG 1 cut(s) 396
MwoI GCNNNNNNNGC 4 cut(s) 129, 309, 314, 320
NciI CCSGG 1 cut(s) 171
NdeII GATC 2 cut(s) 96, 363
PfeI GAWTC 4 cut(s) 198, 332, 380, 496
PkrI GCNGC 1 cut(s) 316
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
Psp1406I AACGTT 1 cut(s) 390
Psp6I CCWGG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 394
PspPI GGNCC 1 cut(s) 372
PstI CTGCAG 1 cut(s) 197
PstNI CAGNNNCTG 1 cut(s) 13
RseI CAYNNNNRTG 2 cut(s) 104, 507
SaqAI TTAA 3 cut(s) 50, 429, 473
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 2 cut(s) 96, 363
Sau96I GGNCC 1 cut(s) 372
SchI GAGTC 1 cut(s) 264
ScrFI CCNGG 2 cut(s) 171, 396
SfcI CTRYAG 1 cut(s) 193
SinI GGWCC 1 cut(s) 372
SmiMI CAYNNNNRTG 2 cut(s) 104, 507
Sse9I AATT 2 cut(s) 202, 475
SsiI CCGC 1 cut(s) 315
SspMI CTAG 2 cut(s) 222, 281
StyD4I CCNGG 2 cut(s) 169, 394
TaaI ACNGT 2 cut(s) 103, 143
TaiI ACGT 4 cut(s) 129, 239, 293, 393
TaqI TCGA 2 cut(s) 215, 250
TasI AATT 2 cut(s) 202, 475
TauI GCSGC 1 cut(s) 317
TfiI GAWTC 4 cut(s) 198, 332, 380, 496
Tru1I TTAA 3 cut(s) 50, 429, 473
Tru9I TTAA 3 cut(s) 50, 429, 473
TscAI CASTG 1 cut(s) 106
TspDTI ATGAA 4 cut(s) 17, 154, 201, 491
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 372
XapI RAATTY 1 cut(s) 475
XspI CTAG 2 cut(s) 222, 281
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.