Rh2CG643700

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0015014
Physical Location & Seq
Forward (+)
81349287 .. 81351087
1801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG643700.1

Sequence Viewer

Length: 714 bp
ATGTCTATGTTTCTAGTGAAAGGGATAAAATTTCCCCAACTTTTTGCATACAGTTGTATCTCCATCATCTCTATTTCCCTCATTATCCACACAAAAAGAAAGACTACTCATCTTCAACAATGTGATAATGCTCTCAGAGCTGAAATCCATACCAGAAGCCTAGCTAGGCAGTTCATCTCCATTAATTTTGCCATGAATCCAGTAATTCTCTTTCTTATTTCCTCTATGTTTTTTCAGTCAGCTATTCTGGGAGGTGAATCAGCAAGGGCAGTAAAAGGTAACTCCCAGATTATTGTAATGGGCCTTGTTTACTGTGACATCTGCTCCAACAACACCTTCTCCCCTCACAGCTACTTCATTCCAGGTGCTGAGGTTAAAATAGATTGCGTATTCAAAGCAGTGTCACCAAGAATTGCAGAACACATATCATTCTCAGCGAATAGAACTACAAACAGGTATGGGGTGTACAAGTTGGAAATCCCATCAGTTGAGGGAATCAAATGTGCAGAAGATTCTGCGATAGTTTCTTCCTGCCAGGCAAGCTTAATGCGGAGTGGATCTCCAGCTTGTAATGTTCCTGGTTTCAAATCCACAGCAGATGAAATAGCAGTCAAATCAAAGGAAGCTAATCTCTGCATCTACAGCCTCAATGCTTTGAATTTCAGACCATCAAGGAGAGACATTGCCTTATGTGGCAAGAAAAAAATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

237

Amino Acids

26.07

Weight (kDa)

9.37

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 99 - 196 2.6e-19 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015014)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26960 AT5G41050
fragaria_vesca FvH4_6g53930
malus_domestica MD17G1011000.v1.1
prunus_persica Prupe.3G309900_v2.0.a1
pyrus_communis pycom17g00570
rosa_chinensis RchiOBHm_Chr2g0176091
rosa_laevigata RLG00000022380
rosa_multiflora Rmu_sc0009879.1_g000002
rosa_roxburghii Rroxscaffold_2G00076780
rosa_rugosa Rorug02G0590400
rosa_samantha Rh2AG669200 Rh2BG680800 Rh2CG643700 Rh2DG694500
rosa_wichuraiana Rw2G054890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 550
AclWI GGATC 1 cut(s) 565
AcsI RAATTY 2 cut(s) 29, 658
AfaI GTAC 1 cut(s) 467
AgsI TTSAA 4 cut(s) 116, 394, 586, 658
AjnI CCWGG 3 cut(s) 361, 534, 577
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AluBI AGCT 7 cut(s) 140, 164, 242, 351, 543, 566, 626
AluI AGCT 7 cut(s) 140, 164, 242, 351, 543, 566, 626
Alw26I GTCTC 1 cut(s) 672
AlwI GGATC 1 cut(s) 565
AlwNI CAGNNNCTG 1 cut(s) 368
AoxI GGCC 1 cut(s) 301
ApoI RAATTY 2 cut(s) 29, 658
AseI ATTAAT 2 cut(s) 183, 708
AspS9I GGNCC 1 cut(s) 301
AsuHPI GGTGA 2 cut(s) 266, 396
BaeI ACNNNNGTAYC 2 cut(s) 40, 73
BbvCI CCTCAGC 1 cut(s) 369
BccI CCATC 3 cut(s) 71, 490, 676
BciT130I CCWGG 3 cut(s) 363, 536, 579
BcoDI GTCTC 1 cut(s) 672
BfaI CTAG 3 cut(s) 14, 161, 165
BfmI CTRYAG 1 cut(s) 640
Bme1390I CCNGG 3 cut(s) 363, 536, 579
BmgT120I GGNCC 1 cut(s) 301
BmrFI CCNGG 3 cut(s) 363, 536, 579
BmsI GCATC 1 cut(s) 645
BplI GAGNNNNNCTC 2 cut(s) 544, 576
BpmI CTGGAG 1 cut(s) 546
Bpu10I CCTNAGC 1 cut(s) 369
BsaXI ACNNNNNCTCC 4 cut(s) 308, 323, 338, 353
Bse1I ACTGG 1 cut(s) 200
Bse3DI GCAATG 1 cut(s) 681
BseBI CCWGG 3 cut(s) 363, 536, 579
BseMI GCAATG 1 cut(s) 681
BseMII CTCAG 3 cut(s) 148, 360, 447
BseNI ACTGG 1 cut(s) 200
BsgI GTGCAG 1 cut(s) 525
BshFI GGCC 1 cut(s) 303
BsmAI GTCTC 1 cut(s) 672
BsnI GGCC 1 cut(s) 303
Bsp1407I TGTACA 1 cut(s) 465
Bsp143I GATC 1 cut(s) 557
BspACI CCGC 1 cut(s) 550
BspANI GGCC 1 cut(s) 303
BspCNI CTCAG 3 cut(s) 147, 361, 446
BspPI GGATC 1 cut(s) 565
BsrDI GCAATG 1 cut(s) 681
BsrGI TGTACA 1 cut(s) 465
BsrI ACTGG 1 cut(s) 200
BssMI GATC 1 cut(s) 557
Bst2UI CCWGG 3 cut(s) 363, 536, 579
Bst4CI ACNGT 2 cut(s) 53, 314
BstAUI TGTACA 1 cut(s) 465
BstC8I GCNNGC 1 cut(s) 541
BstDEI CTNAG 3 cut(s) 134, 369, 433
BstKTI GATC 1 cut(s) 560
BstMAI GTCTC 1 cut(s) 672
BstMBI GATC 1 cut(s) 557
BstMWI GCNNNNNNNGC 3 cut(s) 137, 540, 642
BstNI CCWGG 3 cut(s) 363, 536, 579
BstSCI CCNGG 3 cut(s) 361, 534, 577
BstSFI CTRYAG 1 cut(s) 640
BstX2I RGATCY 1 cut(s) 557
BstYI RGATCY 1 cut(s) 557
BsuRI GGCC 1 cut(s) 303
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 1 cut(s) 541
CaiI CAGNNNCTG 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 301
Csp6I GTAC 1 cut(s) 466
CviAII CATG 1 cut(s) 193
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 3 cut(s) 134, 369, 433
DpnI GATC 1 cut(s) 559
DpnII GATC 1 cut(s) 557
EcoRII CCWGG 3 cut(s) 361, 534, 577
FaeI CATG 1 cut(s) 196
FaiI YATR 8 cut(s) 8, 49, 150, 194, 227, 425, 459, 691
FatI CATG 1 cut(s) 192
FspBI CTAG 3 cut(s) 14, 161, 165
GsuI CTGGAG 1 cut(s) 546
HaeIII GGCC 1 cut(s) 303
Hin1II CATG 1 cut(s) 196
HindIII AAGCTT 1 cut(s) 541
HinfI GANTC 4 cut(s) 196, 257, 495, 512
HphI GGTGA 2 cut(s) 266, 396
Hpy166II GTNNAC 2 cut(s) 310, 466
Hpy188I TCNGA 2 cut(s) 137, 665
Hpy8I GTNNAC 2 cut(s) 310, 466
HpyAV CCTTC 1 cut(s) 346
HpyCH4III ACNGT 2 cut(s) 53, 314
HpyCH4V TGCA 4 cut(s) 47, 416, 506, 636
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 540, 642
HpyF3I CTNAG 3 cut(s) 134, 369, 433
Hsp92II CATG 1 cut(s) 196
Kzo9I GATC 1 cut(s) 557
LmnI GCTCC 1 cut(s) 329
LweI GCATC 1 cut(s) 645
MaeI CTAG 3 cut(s) 14, 161, 165
MaeIII GTNAC 3 cut(s) 278, 314, 402
MalI GATC 1 cut(s) 559
MboI GATC 1 cut(s) 557
MboII GAAGA 3 cut(s) 104, 519, 521
MflI RGATCY 1 cut(s) 557
MluCI AATT 7 cut(s) 29, 184, 204, 411, 658, 705, 709
MmeI TCCRAC 2 cut(s) 351, 453
MnlI CCTC 7 cut(s) 89, 232, 245, 354, 364, 484, 656
MseI TTAA 4 cut(s) 183, 375, 545, 708
MspR9I CCNGG 3 cut(s) 363, 536, 579
MvaI CCWGG 3 cut(s) 363, 536, 579
MwoI GCNNNNNNNGC 3 cut(s) 137, 540, 642
NdeII GATC 1 cut(s) 557
NlaIII CATG 1 cut(s) 196
NmuCI GTSAC 2 cut(s) 314, 402
PfeI GAWTC 4 cut(s) 196, 257, 495, 512
PshBI ATTAAT 2 cut(s) 183, 708
Psp6I CCWGG 3 cut(s) 361, 534, 577
PspGI CCWGG 3 cut(s) 361, 534, 577
PspPI GGNCC 1 cut(s) 301
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 1 cut(s) 557
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
SaqAI TTAA 4 cut(s) 183, 375, 545, 708
Sau3AI GATC 1 cut(s) 557
Sau96I GGNCC 1 cut(s) 301
ScrFI CCNGG 3 cut(s) 363, 536, 579
SfaNI GCATC 1 cut(s) 645
SfcI CTRYAG 1 cut(s) 640
Sse9I AATT 7 cut(s) 29, 184, 204, 411, 658, 705, 709
SsiI CCGC 1 cut(s) 550
SspMI CTAG 3 cut(s) 14, 161, 165
StyD4I CCNGG 3 cut(s) 361, 534, 577
TaaI ACNGT 2 cut(s) 53, 314
TasI AATT 7 cut(s) 29, 184, 204, 411, 658, 705, 709
TatI WGTACW 1 cut(s) 465
TfiI GAWTC 4 cut(s) 196, 257, 495, 512
Tru1I TTAA 4 cut(s) 183, 375, 545, 708
Tru9I TTAA 4 cut(s) 183, 375, 545, 708
TscAI CASTG 1 cut(s) 405
TseFI GTSAC 2 cut(s) 314, 402
Tsp45I GTSAC 2 cut(s) 314, 402
TspDTI ATGAA 4 cut(s) 163, 209, 346, 615
TspRI CASTG 1 cut(s) 405
VspI ATTAAT 2 cut(s) 183, 708
XapI RAATTY 2 cut(s) 29, 658
XspI CTAG 3 cut(s) 14, 161, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.