RLG00000022380

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015014
Physical Location & Seq
Forward (+)
82990906 .. 82991403
498 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022380

Sequence Viewer

Length: 417 bp
ATGGGCCTTGTTTACTGTGACATCTGCTCCAACAACACCTTCTCCACTCACAGCTACTTCATTCCAGGTGCTGAGGTTAAAATAGATTGCATATTCAAAGCAGTGTCACCAAGAATTGCAGAACACATATCATTCTCAGCGAATAGAACTACAAACAGGTATGGGGTGTACAAGTTGGAAATCCCATCAGTTGAGGGAATCAAATGTGCAGAAGATTCTGCGATAGTTTCTTCCTGCCAGGCAAGCTTAATGCGGAGTGGATCTCCAGCTTGTAATGTTCCTGGTTACAAATCCACATCAGATGAAATAGCAATCAAATCAAAGGAAGCTAATCTCTGCATCTACAGCCTAAATGCTTTGAATTACAGACCATCAAGGAGAGACATTGCCTTATGTGGCAAGAAAAAAATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

139

Amino Acids

15.1

Weight (kDa)

8.79

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 1 - 98 9.2e-20 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015014)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26960 AT5G41050
fragaria_vesca FvH4_6g53930
malus_domestica MD17G1011000.v1.1
prunus_persica Prupe.3G309900_v2.0.a1
pyrus_communis pycom17g00570
rosa_chinensis RchiOBHm_Chr2g0176091
rosa_laevigata RLG00000022380
rosa_multiflora Rmu_sc0009879.1_g000002
rosa_roxburghii Rroxscaffold_2G00076780
rosa_rugosa Rorug02G0590400
rosa_samantha Rh2AG669200 Rh2BG680800 Rh2CG643700 Rh2DG694500
rosa_wichuraiana Rw2G054890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 253
AclWI GGATC 1 cut(s) 268
AfaI GTAC 1 cut(s) 170
AgsI TTSAA 2 cut(s) 97, 361
AjnI CCWGG 3 cut(s) 64, 237, 280
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AluBI AGCT 4 cut(s) 54, 246, 269, 329
AluI AGCT 4 cut(s) 54, 246, 269, 329
Alw26I GTCTC 1 cut(s) 375
AlwI GGATC 1 cut(s) 268
AlwNI CAGNNNCTG 1 cut(s) 71
AoxI GGCC 1 cut(s) 4
AseI ATTAAT 1 cut(s) 411
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 99
BbvCI CCTCAGC 1 cut(s) 72
BccI CCATC 2 cut(s) 193, 379
BciT130I CCWGG 3 cut(s) 66, 239, 282
BcoDI GTCTC 1 cut(s) 375
BfmI CTRYAG 1 cut(s) 343
Bme1390I CCNGG 3 cut(s) 66, 239, 282
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 3 cut(s) 66, 239, 282
BmsI GCATC 1 cut(s) 348
BplI GAGNNNNNCTC 2 cut(s) 247, 279
BpmI CTGGAG 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 72
BsaXI ACNNNNNCTCC 4 cut(s) 11, 26, 41, 56
Bse3DI GCAATG 1 cut(s) 384
BseBI CCWGG 3 cut(s) 66, 239, 282
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 2 cut(s) 63, 150
BsgI GTGCAG 1 cut(s) 228
BshFI GGCC 1 cut(s) 6
BsmAI GTCTC 1 cut(s) 375
BsnI GGCC 1 cut(s) 6
Bsp1407I TGTACA 1 cut(s) 168
Bsp143I GATC 1 cut(s) 260
BspACI CCGC 1 cut(s) 253
BspANI GGCC 1 cut(s) 6
BspCNI CTCAG 2 cut(s) 64, 149
BspPI GGATC 1 cut(s) 268
BsrDI GCAATG 1 cut(s) 384
BsrGI TGTACA 1 cut(s) 168
BssMI GATC 1 cut(s) 260
Bst2UI CCWGG 3 cut(s) 66, 239, 282
Bst4CI ACNGT 1 cut(s) 17
BstAUI TGTACA 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 2 cut(s) 72, 136
BstKTI GATC 1 cut(s) 263
BstMAI GTCTC 1 cut(s) 375
BstMBI GATC 1 cut(s) 260
BstMWI GCNNNNNNNGC 2 cut(s) 243, 345
BstNI CCWGG 3 cut(s) 66, 239, 282
BstSCI CCNGG 3 cut(s) 64, 237, 280
BstSFI CTRYAG 1 cut(s) 343
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BsuRI GGCC 1 cut(s) 6
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 244
CaiI CAGNNNCTG 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 169
CviJI RGCY 6 cut(s) 6, 54, 246, 269, 329, 348
CviKI_1 RGCY 6 cut(s) 6, 54, 246, 269, 329, 348
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 2 cut(s) 72, 136
DpnI GATC 1 cut(s) 262
DpnII GATC 1 cut(s) 260
EcoRII CCWGG 3 cut(s) 64, 237, 280
FaiI YATR 4 cut(s) 92, 128, 162, 394
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 244
HinfI GANTC 2 cut(s) 198, 215
HphI GGTGA 1 cut(s) 99
Hpy166II GTNNAC 2 cut(s) 13, 169
Hpy188I TCNGA 1 cut(s) 301
Hpy8I GTNNAC 2 cut(s) 13, 169
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4V TGCA 4 cut(s) 90, 119, 209, 339
HpyF10VI GCNNNNNNNGC 2 cut(s) 243, 345
HpyF3I CTNAG 2 cut(s) 72, 136
Kzo9I GATC 1 cut(s) 260
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 9 cut(s) 51, 78, 142, 224, 247, 251, 267, 279, 294
LweI GCATC 1 cut(s) 348
MaeIII GTNAC 3 cut(s) 17, 105, 284
MalI GATC 1 cut(s) 262
MboI GATC 1 cut(s) 260
MboII GAAGA 2 cut(s) 222, 224
MflI RGATCY 1 cut(s) 260
MluCI AATT 4 cut(s) 114, 361, 408, 412
MmeI TCCRAC 2 cut(s) 54, 156
MnlI CCTC 2 cut(s) 67, 187
MseI TTAA 3 cut(s) 78, 248, 411
MspR9I CCNGG 3 cut(s) 66, 239, 282
MvaI CCWGG 3 cut(s) 66, 239, 282
MwoI GCNNNNNNNGC 2 cut(s) 243, 345
NdeII GATC 1 cut(s) 260
NmuCI GTSAC 2 cut(s) 17, 105
PfeI GAWTC 2 cut(s) 198, 215
PshBI ATTAAT 1 cut(s) 411
Psp6I CCWGG 3 cut(s) 64, 237, 280
PspGI CCWGG 3 cut(s) 64, 237, 280
PspPI GGNCC 1 cut(s) 4
PstNI CAGNNNCTG 1 cut(s) 71
PsuI RGATCY 1 cut(s) 260
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 3 cut(s) 78, 248, 411
Sau3AI GATC 1 cut(s) 260
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 3 cut(s) 66, 239, 282
SetI ASST 8 cut(s) 41, 56, 70, 78, 161, 248, 271, 331
SfaNI GCATC 1 cut(s) 348
SfcI CTRYAG 1 cut(s) 343
Sse9I AATT 4 cut(s) 114, 361, 408, 412
SsiI CCGC 1 cut(s) 253
StyD4I CCNGG 3 cut(s) 64, 237, 280
TaaI ACNGT 1 cut(s) 17
TasI AATT 4 cut(s) 114, 361, 408, 412
TatI WGTACW 1 cut(s) 168
TfiI GAWTC 2 cut(s) 198, 215
Tru1I TTAA 3 cut(s) 78, 248, 411
Tru9I TTAA 3 cut(s) 78, 248, 411
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 2 cut(s) 17, 105
Tsp45I GTSAC 2 cut(s) 17, 105
TspDTI ATGAA 2 cut(s) 49, 318
TspRI CASTG 1 cut(s) 108
VspI ATTAAT 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.