Rh2AG669200

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0015014
Physical Location & Seq
Forward (+)
88357075 .. 88358865
1791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG669200.1

Sequence Viewer

Length: 522 bp
ATGAATCCAGTAATTCTCTTTCTTATTTCCTCTATGTTTTTTCAGTCAGCTATTCTGGGAGGTGAATCAGCAAGGGCAGTAAAAGGTAACTCCCAGATTATTGTAATGGGCCTTGTTTACTGTGACATCTGCTCCAACAACACCTTCTCCCCTCACAGCTACTTCATTCCAGGTGCTGAGGTTAAAATAGATTGCATATTCAAAGCAGTGTCACCAAGAATTGCAGAACACATATCATTCTCAGCGAATAGAACTACAAACAGGTATGGGGTGTACAAGTTGGAAATCCCATCAGTTGAGGGAATCAAATGTGCAGAAGATTCTGCGATAGTTTCTTCCTGCCAGGCAAGCTTAATGCGGAGTGGATCTCCAGCTTGTAATGTTCCTGGTTACAAATCCACATCAGATGAAATAGCAATCAAATCAAAGGAAGCTAATCTCTGCATCTACAGCCTCAATGCTTTGAATTTCAGACCATCAAGGAGAGACATTGCCTTATGTGGCAAGAAAAAAATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

173

Amino Acids

18.8

Weight (kDa)

8.93

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 35 - 133 1e-19 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015014)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26960 AT5G41050
fragaria_vesca FvH4_6g53930
malus_domestica MD17G1011000.v1.1
prunus_persica Prupe.3G309900_v2.0.a1
pyrus_communis pycom17g00570
rosa_chinensis RchiOBHm_Chr2g0176091
rosa_laevigata RLG00000022380
rosa_multiflora Rmu_sc0009879.1_g000002
rosa_roxburghii Rroxscaffold_2G00076780
rosa_rugosa Rorug02G0590400
rosa_samantha Rh2AG669200 Rh2BG680800 Rh2CG643700 Rh2DG694500
rosa_wichuraiana Rw2G054890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 358
AclWI GGATC 1 cut(s) 373
AcsI RAATTY 1 cut(s) 466
AfaI GTAC 1 cut(s) 275
AgsI TTSAA 2 cut(s) 202, 466
AjnI CCWGG 3 cut(s) 169, 342, 385
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AluBI AGCT 5 cut(s) 50, 159, 351, 374, 434
AluI AGCT 5 cut(s) 50, 159, 351, 374, 434
Alw26I GTCTC 1 cut(s) 480
AlwI GGATC 1 cut(s) 373
AlwNI CAGNNNCTG 1 cut(s) 176
AoxI GGCC 1 cut(s) 109
ApoI RAATTY 1 cut(s) 466
AseI ATTAAT 1 cut(s) 516
AspS9I GGNCC 1 cut(s) 109
AsuHPI GGTGA 2 cut(s) 74, 204
BbvCI CCTCAGC 1 cut(s) 177
BccI CCATC 2 cut(s) 298, 484
BciT130I CCWGG 3 cut(s) 171, 344, 387
BcoDI GTCTC 1 cut(s) 480
BfmI CTRYAG 1 cut(s) 448
Bme1390I CCNGG 3 cut(s) 171, 344, 387
BmgT120I GGNCC 1 cut(s) 109
BmrFI CCNGG 3 cut(s) 171, 344, 387
BmsI GCATC 1 cut(s) 453
BplI GAGNNNNNCTC 2 cut(s) 352, 384
BpmI CTGGAG 1 cut(s) 354
Bpu10I CCTNAGC 1 cut(s) 177
BsaXI ACNNNNNCTCC 4 cut(s) 116, 131, 146, 161
Bse1I ACTGG 1 cut(s) 8
Bse3DI GCAATG 1 cut(s) 489
BseBI CCWGG 3 cut(s) 171, 344, 387
BseMI GCAATG 1 cut(s) 489
BseMII CTCAG 2 cut(s) 168, 255
BseNI ACTGG 1 cut(s) 8
BsgI GTGCAG 1 cut(s) 333
BshFI GGCC 1 cut(s) 111
BsmAI GTCTC 1 cut(s) 480
BsnI GGCC 1 cut(s) 111
Bsp1407I TGTACA 1 cut(s) 273
Bsp143I GATC 1 cut(s) 365
BspACI CCGC 1 cut(s) 358
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 2 cut(s) 169, 254
BspPI GGATC 1 cut(s) 373
BsrDI GCAATG 1 cut(s) 489
BsrGI TGTACA 1 cut(s) 273
BsrI ACTGG 1 cut(s) 8
BssMI GATC 1 cut(s) 365
Bst2UI CCWGG 3 cut(s) 171, 344, 387
Bst4CI ACNGT 1 cut(s) 122
BstAUI TGTACA 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 2 cut(s) 177, 241
BstKTI GATC 1 cut(s) 368
BstMAI GTCTC 1 cut(s) 480
BstMBI GATC 1 cut(s) 365
BstMWI GCNNNNNNNGC 2 cut(s) 348, 450
BstNI CCWGG 3 cut(s) 171, 344, 387
BstSCI CCNGG 3 cut(s) 169, 342, 385
BstSFI CTRYAG 1 cut(s) 448
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
BsuRI GGCC 1 cut(s) 111
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 349
CaiI CAGNNNCTG 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 274
CviJI RGCY 7 cut(s) 50, 111, 159, 351, 374, 434, 453
CviKI_1 RGCY 7 cut(s) 50, 111, 159, 351, 374, 434, 453
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 2 cut(s) 177, 241
DpnI GATC 1 cut(s) 367
DpnII GATC 1 cut(s) 365
EcoRII CCWGG 3 cut(s) 169, 342, 385
FaiI YATR 5 cut(s) 35, 197, 233, 267, 499
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 1 cut(s) 111
HindIII AAGCTT 1 cut(s) 349
HinfI GANTC 4 cut(s) 4, 65, 303, 320
HphI GGTGA 2 cut(s) 74, 204
Hpy166II GTNNAC 2 cut(s) 118, 274
Hpy188I TCNGA 2 cut(s) 406, 473
Hpy8I GTNNAC 2 cut(s) 118, 274
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 4 cut(s) 195, 224, 314, 444
HpyF10VI GCNNNNNNNGC 2 cut(s) 348, 450
HpyF3I CTNAG 2 cut(s) 177, 241
Kzo9I GATC 1 cut(s) 365
LmnI GCTCC 1 cut(s) 137
LweI GCATC 1 cut(s) 453
MaeIII GTNAC 4 cut(s) 86, 122, 210, 389
MalI GATC 1 cut(s) 367
MboI GATC 1 cut(s) 365
MboII GAAGA 2 cut(s) 327, 329
MflI RGATCY 1 cut(s) 365
MluCI AATT 5 cut(s) 12, 219, 466, 513, 517
MmeI TCCRAC 2 cut(s) 159, 261
MnlI CCTC 6 cut(s) 40, 53, 162, 172, 292, 464
MseI TTAA 3 cut(s) 183, 353, 516
MspR9I CCNGG 3 cut(s) 171, 344, 387
MvaI CCWGG 3 cut(s) 171, 344, 387
MwoI GCNNNNNNNGC 2 cut(s) 348, 450
NdeII GATC 1 cut(s) 365
NmuCI GTSAC 2 cut(s) 122, 210
PfeI GAWTC 4 cut(s) 4, 65, 303, 320
PshBI ATTAAT 1 cut(s) 516
Psp6I CCWGG 3 cut(s) 169, 342, 385
PspGI CCWGG 3 cut(s) 169, 342, 385
PspPI GGNCC 1 cut(s) 109
PstNI CAGNNNCTG 1 cut(s) 176
PsuI RGATCY 1 cut(s) 365
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
SaqAI TTAA 3 cut(s) 183, 353, 516
Sau3AI GATC 1 cut(s) 365
Sau96I GGNCC 1 cut(s) 109
ScrFI CCNGG 3 cut(s) 171, 344, 387
SfaNI GCATC 1 cut(s) 453
SfcI CTRYAG 1 cut(s) 448
Sse9I AATT 5 cut(s) 12, 219, 466, 513, 517
SsiI CCGC 1 cut(s) 358
StyD4I CCNGG 3 cut(s) 169, 342, 385
TaaI ACNGT 1 cut(s) 122
TasI AATT 5 cut(s) 12, 219, 466, 513, 517
TatI WGTACW 1 cut(s) 273
TfiI GAWTC 4 cut(s) 4, 65, 303, 320
Tru1I TTAA 3 cut(s) 183, 353, 516
Tru9I TTAA 3 cut(s) 183, 353, 516
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 2 cut(s) 122, 210
Tsp45I GTSAC 2 cut(s) 122, 210
TspDTI ATGAA 3 cut(s) 17, 154, 423
TspRI CASTG 1 cut(s) 213
VspI ATTAAT 1 cut(s) 516
XapI RAATTY 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.