AT3G27180
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
10026837 .. 10030087
3251 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27180.1

Sequence Viewer

Length: 1557 bp
ATGATGAATTCGTCGAGCCTTTTCTCGTTCGGCGGTCGTTTTCCAATCATCAACTGCCGCGTGTCAGCTCCTGCTTCGGCTCCCTTCGTCGCTTCCGTTCCTCTCCCGCCGTCAACCTCCTCCGACTCACTAGCTTGCTCTCTCCAATGTCCTCATTTCCAATCGTGCTCAGGATGTACGCAAGAGTTCAATCTCCATCGTCCAGCTGTTGTCGACGAAGCTTCAGACTTCTTCAAGCGTTACGGCGTCGATGATTTCACTTTCGACAGTTGTAGACTGTGGGGATGGAGATGCCGAGCAAAATTGGCTGTTCGTGGCTCTTCAGATAACGCATTAATTGGATTGTACCAAGAAGGAACTCACACTGTTGTTGATATTCCTGAATGCAAATCTCATCATCCTAATATTAATGCTGCCATTGAGTTATTGAGAGAAGGTATTAAGGTGTTTGATGTTGTGCCATTTGATGAGGATCAGGGTACTGGGGACTTACGATATGTTCAGATGGCTGTTACGACGCATAGTACAAATCTTCGTGCTCCAGAGAGATATAAAAATGGAAAAGTGCAGGTGTCCTTGGTTTGGAACTCGAGAAATGAGAGATCTCATAATGCAGATAAGTTGCAAGCATTGTCCACCTACTTGTGGAGAAAGGGTGGACCAAACAGCAAGTTTCACCTGATACATTCTGTCTGGGCTAACTTTCAGACATCAACCAACAATATAATCTTTGGAAACAGATGGAGGCATCTTTTAGGTGAGAGAGATTTCTGGGAACATGTAGGAGGAATTGACATATCCTTGGATCCTTCCAGTTTTGGCCAGGCAAATACTCGGGCTTTTGATAGCTTGCTTTGGAAACTGCATAAGTATGTTCCTGGTGGATCATCTGTTGCTGATCTATATGCAGGAGCCGGAGTGATTGGATTATCGTTAGCTACATCGAGGAAATGCAGTTCTGTCAAATGCATTGAGGTTAACAAAGAAGCAAGGCTGTCTTTTGAGAAAACAATCCAGCGGTTGCCGAACTCATTGAATTGCAGCATCAGTTGGCACCATGCAGATGCTTCAGTTAACCCTCTTTCGTGGATAATAGGATCAGATGTAGTCGTTGTGGATCCTCCTAGGAGAGGTCTGGATGCTTCTCTCCGTCAGATGCTGGAGTCTGTTCCCTCCATTGAGAAAAGAATGAGGTCGTCATCACAGAGTTCAAGCTTGAACGCAAAAGAGGAGAAGAGGCCGTGGATTTTAAGAGCAAAGGAACTTTCAATTCAAGCTGGCAACAAGCAGACCTCTGAGGAGAACAATACACTACCGCAAAGACTCATATATATAAGCTGTGGTTGGGAAAGCTTTAAAGAGGACTGCAAGTCGTTATTATCTAGCAGAGCGTGGGAGTTGGAAAAAGCCCATGGCTTCAACTTCTTTCCCGGAACCGACAGCATTGAAGTTTTGGCCGTATTCAAAAGAAGGGTTGCGAGCAAGAAAAAGAAGAAATCGGGAATAAAAAAAGTGGGAATTAAGAAAGTGCGTGCTAAGTCACAGGACTCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

518

Amino Acids

57.84

Weight (kDa)

9.31

Isoelectric Point (pI)

50.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cons_hypoth95 PF03602 295 - 380 1.5e-06 Conserved hypothetical protein 95
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013116)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 559
Acc36I ACCTGC 1 cut(s) 559
AccB1I GGYRCC 1 cut(s) 1053
AccI GTMKAC 2 cut(s) 213, 274
AccII CGCG 1 cut(s) 60
AciI CCGC 5 cut(s) 33, 58, 107, 1018, 1316
AclWI GGATC 7 cut(s) 480, 800, 813, 892, 1105, 1112, 1125
AcoI YGGCCR 2 cut(s) 820, 1455
AcsI RAATTY 1 cut(s) 7
AcuI CTGAAG 3 cut(s) 207, 306, 1053
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 4 cut(s) 178, 347, 481, 526
AfiI CCNNNNNNNGG 3 cut(s) 582, 645, 1130
AflIII ACRYGT 1 cut(s) 778
AhdI GACNNNNNGTC 1 cut(s) 1369
AjnI CCWGG 2 cut(s) 822, 877
AloI GAACNNNNNNTCC 2 cut(s) 940, 972
Alw21I GWGCWC 2 cut(s) 170, 541
AlwI GGATC 7 cut(s) 480, 800, 813, 892, 1105, 1112, 1125
AlwNI CAGNNNCTG 2 cut(s) 71, 1159
Ama87I CYCGRG 2 cut(s) 589, 834
AoxI GGCC 3 cut(s) 820, 1238, 1455
ApeKI GCWGC 2 cut(s) 413, 1041
ApoI RAATTY 1 cut(s) 7
AseI ATTAAT 2 cut(s) 335, 408
AspA2I CCTAGG 1 cut(s) 1124
AspS9I GGNCC 1 cut(s) 659
AsuC2I CCSGG 1 cut(s) 1431
AsuHPI GGTGA 2 cut(s) 668, 770
AvaI CYCGRG 2 cut(s) 589, 834
AvaII GGWCC 1 cut(s) 659
AvrII CCTAGG 1 cut(s) 1124
BalI TGGCCA 1 cut(s) 822
BamHI GGATCC 2 cut(s) 805, 1117
BanI GGYRCC 1 cut(s) 1053
Bbv12I GWGCWC 2 cut(s) 170, 541
BbvI GCAGC 2 cut(s) 400, 1053
BccI CCATC 4 cut(s) 204, 279, 499, 735
BceAI ACGGC 4 cut(s) 94, 259, 1225, 1442
BciT130I CCWGG 2 cut(s) 824, 879
BcnI CCSGG 1 cut(s) 1431
BfaI CTAG 3 cut(s) 131, 1125, 1383
BfuAI ACCTGC 1 cut(s) 559
BglII AGATCT 1 cut(s) 602
BisI GCNGC 3 cut(s) 58, 414, 1042
BlnI CCTAGG 1 cut(s) 1124
BlsI GCNGC 3 cut(s) 59, 415, 1043
Bme1390I CCNGG 3 cut(s) 824, 879, 1431
Bme18I GGWCC 1 cut(s) 659
BmeRI GACNNNNNGTC 1 cut(s) 1369
BmeT110I CYCGRG 2 cut(s) 589, 834
BmgT120I GGNCC 1 cut(s) 659
BmiI GGNNCC 6 cut(s) 81, 807, 913, 1055, 1119, 1435
BmrFI CCNGG 3 cut(s) 824, 879, 1431
BmrI ACTGGG 1 cut(s) 492
BmsI GCATC 6 cut(s) 281, 757, 1053, 1054, 1129, 1146
BmuI ACTGGG 1 cut(s) 492
BpmI CTGGAG 2 cut(s) 525, 1181
Bpu10I CCTNAGC 1 cut(s) 169
BpuMI CCSGG 1 cut(s) 1431
BsaBI GATNNNNATC 1 cut(s) 471
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 5 cut(s) 576, 801, 1124, 1241, 1411
BsaXI ACNNNNNCTCC 4 cut(s) 640, 670, 903, 933
Bsc4I CCNNNNNNNGG 3 cut(s) 582, 645, 1130
Bse1I ACTGG 2 cut(s) 487, 813
Bse8I GATNNNNATC 1 cut(s) 471
BseBI CCWGG 2 cut(s) 824, 879
BseDI CCNNGG 5 cut(s) 576, 801, 1124, 1241, 1411
BseGI GGATG 4 cut(s) 179, 290, 397, 1144
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 3 cut(s) 582, 645, 1130
BseMII CTCAG 2 cut(s) 183, 1287
BseNI ACTGG 2 cut(s) 487, 813
BseRI GAGGAG 3 cut(s) 109, 1244, 1313
BseXI GCAGC 2 cut(s) 400, 1053
BsgI GTGCAG 1 cut(s) 587
Bsh1236I CGCG 1 cut(s) 60
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 3 cut(s) 822, 1240, 1457
BshNI GGYRCC 1 cut(s) 1053
BsiEI CGRYCG 1 cut(s) 37
BsiHKAI GWGCWC 2 cut(s) 170, 541
BsiHKCI CYCGRG 2 cut(s) 589, 834
BsiSI CCGG 2 cut(s) 915, 1431
BslFI GGGAC 1 cut(s) 500
BslI CCNNNNNNNGG 3 cut(s) 582, 645, 1130
BsmFI GGGAC 1 cut(s) 500
BsmI GAATGC 1 cut(s) 389
BsnI GGCC 3 cut(s) 822, 1240, 1457
BsoBI CYCGRG 2 cut(s) 589, 834
Bsp1286I GDGCHC 2 cut(s) 170, 541
Bsp143I GATC 7 cut(s) 472, 602, 805, 884, 898, 1097, 1117
Bsp19I CCATGG 1 cut(s) 1411
BspACI CCGC 5 cut(s) 33, 58, 107, 1018, 1316
BspANI GGCC 3 cut(s) 822, 1240, 1457
BspCNI CTCAG 2 cut(s) 182, 1288
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 6 cut(s) 81, 807, 913, 1055, 1119, 1435
BspMI ACCTGC 1 cut(s) 559
BspPI GGATC 7 cut(s) 480, 800, 813, 892, 1105, 1112, 1125
BspQI GCTCTTC 1 cut(s) 325
BspT107I GGYRCC 1 cut(s) 1053
BsrI ACTGG 2 cut(s) 487, 813
BssECI CCNNGG 5 cut(s) 576, 801, 1124, 1241, 1411
BssMI GATC 7 cut(s) 472, 602, 805, 884, 898, 1097, 1117
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 4 cut(s) 576, 801, 1124, 1411
Bst2UI CCWGG 2 cut(s) 824, 879
Bst4CI ACNGT 3 cut(s) 269, 279, 367
Bst6I CTCTTC 2 cut(s) 325, 1229
BstACI GRCGYC 1 cut(s) 246
BstC8I GCNNGC 6 cut(s) 136, 627, 851, 1279, 1480, 1533
BstDEI CTNAG 3 cut(s) 169, 1296, 1536
BstDSI CCRYGG 2 cut(s) 1241, 1411
BstENI CCTNNNNNAGG 1 cut(s) 1128
BstF5I GGATG 4 cut(s) 179, 290, 397, 1144
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 7 cut(s) 475, 605, 808, 887, 901, 1100, 1120
BstMBI GATC 7 cut(s) 472, 602, 805, 884, 898, 1097, 1117
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNI CCWGG 2 cut(s) 824, 879
BstNSI RCATGY 1 cut(s) 782
BstSCI CCNGG 3 cut(s) 822, 877, 1429
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 2 cut(s) 400, 1053
BstX2I RGATCY 3 cut(s) 602, 805, 1117
BstYI RGATCY 3 cut(s) 602, 805, 1117
BsuRI GGCC 3 cut(s) 822, 1240, 1457
BtgI CCRYGG 2 cut(s) 1241, 1411
BtsCI GGATG 4 cut(s) 179, 290, 397, 1144
BtsIMutI CAGTG 1 cut(s) 363
BveI ACCTGC 1 cut(s) 559
Cac8I GCNNGC 6 cut(s) 136, 627, 851, 1279, 1480, 1533
CaiI CAGNNNCTG 2 cut(s) 71, 1159
Cfr13I GGNCC 1 cut(s) 659
CseI GACGC 2 cut(s) 235, 526
Csp6I GTAC 4 cut(s) 177, 346, 480, 525
CviAII CATG 3 cut(s) 779, 1058, 1412
CviQI GTAC 4 cut(s) 177, 346, 480, 525
DdeI CTNAG 3 cut(s) 169, 1296, 1536
DpnI GATC 7 cut(s) 474, 604, 807, 886, 900, 1099, 1119
DpnII GATC 7 cut(s) 472, 602, 805, 884, 898, 1097, 1117
DraI TTTAAA 1 cut(s) 1357
DriI GACNNNNNGTC 1 cut(s) 1369
EaeI YGGCCR 2 cut(s) 820, 1455
Eam1104I CTCTTC 2 cut(s) 325, 1229
Eam1105I GACNNNNNGTC 1 cut(s) 1369
EarI CTCTTC 2 cut(s) 325, 1229
Eco130I CCWWGG 4 cut(s) 576, 801, 1124, 1411
Eco47I GGWCC 1 cut(s) 659
Eco57I CTGAAG 3 cut(s) 207, 306, 1053
Eco88I CYCGRG 2 cut(s) 589, 834
EcoNI CCTNNNNNAGG 1 cut(s) 1128
EcoRI GAATTC 1 cut(s) 7
EcoRII CCWGG 2 cut(s) 822, 877
EcoT14I CCWWGG 4 cut(s) 576, 801, 1124, 1411
EcoT22I ATGCAT 1 cut(s) 971
ErhI CCWWGG 4 cut(s) 576, 801, 1124, 1411
FaeI CATG 3 cut(s) 782, 1061, 1415
FalI AAGNNNNNCTT 2 cut(s) 982, 1014
FaqI GGGAC 1 cut(s) 500
FatI CATG 3 cut(s) 778, 1057, 1411
FauI CCCGC 1 cut(s) 114
FblI GTMKAC 2 cut(s) 213, 274
Fnu4HI GCNGC 3 cut(s) 58, 414, 1042
FokI GGATG 4 cut(s) 186, 297, 384, 1151
Fsp4HI GCNGC 3 cut(s) 58, 414, 1042
FspBI CTAG 3 cut(s) 131, 1125, 1383
GluI GCNGC 3 cut(s) 58, 414, 1042
GsuI CTGGAG 2 cut(s) 525, 1181
HaeIII GGCC 3 cut(s) 822, 1240, 1457
HapII CCGG 2 cut(s) 915, 1431
HgaI GACGC 2 cut(s) 235, 526
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 3 cut(s) 782, 1061, 1415
HincII GTYRAC 4 cut(s) 114, 214, 979, 1075
HindII GTYRAC 4 cut(s) 114, 214, 979, 1075
HindIII AAGCTT 3 cut(s) 219, 1213, 1351
HinfI GANTC 4 cut(s) 125, 1163, 1323, 1547
HpaI GTTAAC 2 cut(s) 979, 1075
HpaII CCGG 2 cut(s) 915, 1431
HphI GGTGA 2 cut(s) 668, 770
Hpy166II GTNNAC 7 cut(s) 114, 214, 275, 636, 659, 979, 1075
Hpy188I TCNGA 8 cut(s) 124, 226, 325, 504, 708, 1102, 1155, 1297
Hpy188III TCNNGA 6 cut(s) 171, 380, 542, 591, 1136, 1500
Hpy8I GTNNAC 7 cut(s) 114, 214, 275, 636, 659, 979, 1075
Hpy99I CGWCG 5 cut(s) 16, 92, 218, 251, 520
HpyAV CCTTC 5 cut(s) 94, 347, 428, 819, 1464
HpyCH4III ACNGT 3 cut(s) 269, 279, 367
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 3 cut(s) 169, 1296, 1536
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 3 cut(s) 782, 1061, 1415
KspAI GTTAAC 2 cut(s) 979, 1075
Kzo9I GATC 7 cut(s) 472, 602, 805, 884, 898, 1097, 1117
LguI GCTCTTC 1 cut(s) 325
LmnI GCTCC 4 cut(s) 73, 85, 544, 911
Lsp1109I GCAGC 2 cut(s) 400, 1053
LweI GCATC 6 cut(s) 281, 757, 1053, 1054, 1129, 1146
MaeI CTAG 3 cut(s) 131, 1125, 1383
MaeIII GTNAC 3 cut(s) 239, 511, 1539
MalI GATC 7 cut(s) 474, 604, 807, 886, 900, 1099, 1119
MboI GATC 7 cut(s) 472, 602, 805, 884, 898, 1097, 1117
MboII GAAGA 5 cut(s) 223, 312, 524, 1246, 1504
MflI RGATCY 3 cut(s) 602, 805, 1117
MhlI GDGCHC 2 cut(s) 170, 541
MlsI TGGCCA 1 cut(s) 822
MluCI AATT 7 cut(s) 7, 302, 336, 789, 1036, 1269, 1518
MluNI TGGCCA 1 cut(s) 822
MlyI GAGTC 4 cut(s) 119, 1172, 1317, 1541
MmeI TCCRAC 2 cut(s) 147, 1380
Mox20I TGGCCA 1 cut(s) 822
Mph1103I ATGCAT 1 cut(s) 971
MscI TGGCCA 1 cut(s) 822
MseI TTAA 8 cut(s) 335, 408, 441, 978, 1074, 1250, 1356, 1521
MslI CAYNNNNRTG 2 cut(s) 870, 1062
Msp20I TGGCCA 1 cut(s) 822
MspA1I CMGCKG 2 cut(s) 206, 1018
MspI CCGG 2 cut(s) 915, 1431
MspR9I CCNGG 3 cut(s) 824, 879, 1431
Mva1269I GAATGC 1 cut(s) 389
MvaI CCWGG 2 cut(s) 824, 879
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 305
NciI CCSGG 1 cut(s) 1431
NcoI CCATGG 1 cut(s) 1411
NdeII GATC 7 cut(s) 472, 602, 805, 884, 898, 1097, 1117
NlaIII CATG 3 cut(s) 782, 1061, 1415
NlaIV GGNNCC 6 cut(s) 81, 807, 913, 1055, 1119, 1435
NmeAIII GCCGAG 1 cut(s) 320
NmuCI GTSAC 1 cut(s) 1539
NsiI ATGCAT 1 cut(s) 971
NspI RCATGY 1 cut(s) 782
PaeR7I CTCGAG 1 cut(s) 589
PaqCI CACCTGC 1 cut(s) 559
PciI ACATGT 1 cut(s) 778
PciSI GCTCTTC 1 cut(s) 325
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 389
PfoI TCCNGGA 1 cut(s) 1429
PkrI GCNGC 3 cut(s) 59, 415, 1043
PleI GAGTC 4 cut(s) 119, 1171, 1317, 1541
PpsI GAGTC 4 cut(s) 119, 1171, 1317, 1541
PscI ACATGT 1 cut(s) 778
PshBI ATTAAT 2 cut(s) 335, 408
Psp6I CCWGG 2 cut(s) 822, 877
PspGI CCWGG 2 cut(s) 822, 877
PspN4I GGNNCC 6 cut(s) 81, 807, 913, 1055, 1119, 1435
PspPI GGNCC 1 cut(s) 659
PstNI CAGNNNCTG 2 cut(s) 71, 1159
PsuI RGATCY 3 cut(s) 602, 805, 1117
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 4 cut(s) 178, 347, 481, 526
RsaNI GTAC 4 cut(s) 177, 346, 480, 525
RseI CAYNNNNRTG 2 cut(s) 870, 1062
SalI GTCGAC 1 cut(s) 212
SapI GCTCTTC 1 cut(s) 325
SaqAI TTAA 8 cut(s) 335, 408, 441, 978, 1074, 1250, 1356, 1521
SatI GCNGC 3 cut(s) 58, 414, 1042
Sau3AI GATC 7 cut(s) 472, 602, 805, 884, 898, 1097, 1117
Sau96I GGNCC 1 cut(s) 659
SchI GAGTC 4 cut(s) 119, 1172, 1317, 1541
ScrFI CCNGG 3 cut(s) 824, 879, 1431
SduI GDGCHC 2 cut(s) 170, 541
SfaNI GCATC 6 cut(s) 281, 757, 1053, 1054, 1129, 1146
Sfr274I CTCGAG 1 cut(s) 589
SinI GGWCC 1 cut(s) 659
SlaI CTCGAG 1 cut(s) 589
SmiMI CAYNNNNRTG 2 cut(s) 870, 1062
SmlI CTYRAG 1 cut(s) 589
SmoI CTYRAG 1 cut(s) 589
Sse9I AATT 7 cut(s) 7, 302, 336, 789, 1036, 1269, 1518
SsiI CCGC 5 cut(s) 33, 58, 107, 1018, 1316
SspI AATATT 1 cut(s) 406
SspMI CTAG 3 cut(s) 131, 1125, 1383
StyD4I CCNGG 3 cut(s) 822, 877, 1429
StyI CCWWGG 4 cut(s) 576, 801, 1124, 1411
TaaI ACNGT 3 cut(s) 269, 279, 367
TaqI TCGA 6 cut(s) 14, 213, 249, 264, 590, 944
TasI AATT 7 cut(s) 7, 302, 336, 789, 1036, 1269, 1518
TatI WGTACW 1 cut(s) 524
TauI GCSGC 1 cut(s) 60
Tru1I TTAA 8 cut(s) 335, 408, 441, 978, 1074, 1250, 1356, 1521
Tru9I TTAA 8 cut(s) 335, 408, 441, 978, 1074, 1250, 1356, 1521
TscAI CASTG 1 cut(s) 370
TseFI GTSAC 1 cut(s) 1539
TseI GCWGC 2 cut(s) 413, 1041
Tsp45I GTSAC 1 cut(s) 1539
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 2 cut(s) 85, 1139
TspRI CASTG 1 cut(s) 370
VpaK11BI GGWCC 1 cut(s) 659
VspI ATTAAT 2 cut(s) 335, 408
XagI CCTNNNNNAGG 1 cut(s) 1128
XapI RAATTY 1 cut(s) 7
XceI RCATGY 1 cut(s) 782
XhoI CTCGAG 1 cut(s) 589
XmaJI CCTAGG 1 cut(s) 1124
XmiI GTMKAC 2 cut(s) 213, 274
XspI CTAG 3 cut(s) 131, 1125, 1383
Zsp2I ATGCAT 1 cut(s) 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.