MD09G1012500.v1.1
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
798005 .. 802040
4036 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1012500.v1.1.491

Sequence Viewer

Length: 1566 bp
ATGCCTCTCTGCTTCCTCTCCGTCCGTCCTCCTCCGCCTCCACTCATCACCTGCCACGTGTCCCCAACCGCAGTGCGTCCCCCGCCGTCTGCTTCAGCACCACCACAAGTACCAGCAGCACTACCTTCTCTCGCACTGAGCCCTAGCTCAACCCCTCCTCCGCCGCCGCTAACCTGCGCCCTCCACTGCCCGCACTTCGAATCGTGCTCCGGGTGTACGCACGAGTTCAATCTCCACCGTCCGGTCATCGTCGATGAGGCAACGGAGTTCTTCAAGACAGTTGGAGTCTCAGATTTCACTTTTGACAGTTGCAAATTGTGGGGATGGCGGTGTCGCGCAAAGTTAGCCGTTCGTGGCTCACCGGAAAACCCCCTGATTGGGCTTTATCAGGAGGGAACTCATAATGTAGTAGATATTCCTCAATGCAAAGCTCATCATCCAAGTATAAATGCTGCTGTGGAGCTGCTTAAACAAGGTATTACTGAACTACGCGTTGAGCCATATGATGAAGATGAGGGGACAGGTGATTTACGATATGTGCAGATGGCTGTGACAACACACAATACTTCCCTTCCCGCTTCCGAAAGATATAAGAATGGTAAAGTGCAGGTAGCTTTAGTATGGAATTCAAGAAACGAAAATTCGCCGAGTTCGGAGAAACTGCAAGCCTTGGCCAATTTTATGTGGAGAAATGGTGGGCCAAGGAACAAGGTCAATCTGATTCACTCTGTATGGGCTAACTTTCAGACATCATCTAACAATATAATTTTTGGAAATAGATGGAGACATCTTTTAGGGGAAAGAGACTTTTGGGAACATGTTGGAGGAATTGATATTTCCTTGGCTCCGTCCAGTTTTGGCCAAGCAAACACAAGGGCTTTTGATACCTTGCTTCGGAAGCTACAAAAATATGTCCCTCAGGGAGCATCTGTTGCTGATTTGTATGCAGGAGCTGGTGTAATTGGATTATCATTAGCTGTGACAAGAAAATGCAGGTCTGTTCGATGCATTGAGATTAATAAAGAATCAAAAGTATCCTTTGAGAAGACAGTTGACCGCCTGCCAAACTCGGTAGAGAGCAGCATCAGCTGGCATCTTGCAGACACTTCTAAAGAACCTCTTTCTTGGATCATGGGATCAGATGTACTTGTTGTCGATCCTCCTAGAAAGGGACTGGATGCATCTCTTGTTGATGCATTGCGGAGTATAGCTTCAGCAAAGCGTAAAGCTAAGTCGTCCTCGGAGAGTTCAAGCTCAAGGGGTAAGGATGAGAAGAGACCATGGATGCTGCGTGCAAAAGAAGCTTCAGTTCAGATCAGAAGCGAAATTACTTCAGAAGATAGTAAATCATGGCCTCAAACCCTTATTTATATAAGTTGTGGATGGGAAAGCTTCAAAGAGGATTGCAAGGATTTGTTGTCTAGCAAGGCATGGCACTTGGAAAAAGCCCATGGCTATAATTTTTTCCCTGGAACCCAGAGCATCGAGGTTTTAGCTGTGTTCAAGAGGGGCCAAGGAAGCCCAAAGAAAAAGAGAACAGGAATAAAGCAGAAGAAACGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

522

Amino Acids

57.64

Weight (kDa)

9.21

Isoelectric Point (pI)

54.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013116)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 59
Acc36I ACCTGC 4 cut(s) 59, 182, 598, 984
AccII CGCG 2 cut(s) 336, 492
AclWI GGATC 3 cut(s) 1136, 1144, 1151
AcoI YGGCCR 2 cut(s) 672, 859
AcsI RAATTY 2 cut(s) 625, 640
AcuI CTGAAG 4 cut(s) 78, 1197, 1290, 1317
AcvI CACGTG 1 cut(s) 58
AfaI GTAC 3 cut(s) 111, 217, 1146
AfiI CCNNNNNNNGG 5 cut(s) 241, 377, 378, 894, 1169
AflIII ACRYGT 3 cut(s) 57, 490, 817
AgsI TTSAA 6 cut(s) 229, 274, 630, 1251, 1396, 1504
AjnI CCWGG 1 cut(s) 1468
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 4 cut(s) 292, 778, 798, 1270
AlwI GGATC 3 cut(s) 1136, 1144, 1151
AlwNI CAGNNNCTG 1 cut(s) 953
AoxI GGCC 5 cut(s) 672, 698, 859, 1352, 1510
ApeKI GCWGC 5 cut(s) 116, 452, 463, 1080, 1288
ApoI RAATTY 2 cut(s) 625, 640
AseI ATTAAT 1 cut(s) 1017
AspLEI GCGC 2 cut(s) 179, 338
AspS9I GGNCC 2 cut(s) 698, 1510
AsuC2I CCSGG 1 cut(s) 211
AsuHPI GGTGA 3 cut(s) 40, 351, 536
AsuII TTCGAA 1 cut(s) 198
AxyI CCTNAGG 1 cut(s) 918
BalI TGGCCA 2 cut(s) 674, 861
BanII GRGCYC 1 cut(s) 143
BarI GAAGNNNNNNTAC 2 cut(s) 1312, 1344
BauI CACGAG 1 cut(s) 221
BbrPI CACGTG 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 1052
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 5 cut(s) 128, 439, 450, 1092, 1275
BccI CCATC 4 cut(s) 318, 538, 774, 1377
BceAI ACGGC 2 cut(s) 70, 332
BciT130I CCWGG 1 cut(s) 1470
BciVI GTATCC 1 cut(s) 1045
BcnI CCSGG 1 cut(s) 211
BcoDI GTCTC 4 cut(s) 292, 778, 798, 1270
BfaI CTAG 3 cut(s) 144, 1164, 1422
BfuAI ACCTGC 4 cut(s) 59, 182, 598, 984
BfuI GTATCC 1 cut(s) 1045
BisI GCNGC 7 cut(s) 117, 164, 167, 453, 464, 1081, 1289
BlsI GCNGC 7 cut(s) 118, 165, 168, 454, 465, 1082, 1290
Bme1390I CCNGG 2 cut(s) 211, 1470
BmgT120I GGNCC 2 cut(s) 698, 1510
BmiI GGNNCC 3 cut(s) 846, 1474, 1511
BmrFI CCNGG 2 cut(s) 211, 1470
BmsI GCATC 9 cut(s) 935, 995, 1092, 1102, 1168, 1183, 1190, 1275, 1491
BpiI GAAGAC 1 cut(s) 1052
Bpu14I TTCGAA 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 1240
BpuMI CCSGG 1 cut(s) 211
BsaAI YACGTR 1 cut(s) 58
BsaI GGTCTC 1 cut(s) 1270
BsaJI CCNNGG 8 cut(s) 669, 701, 840, 1239, 1280, 1450, 1468, 1513
BsaWI WCCGGW 2 cut(s) 241, 361
BsaXI ACNNNNNCTCC 8 cut(s) 142, 172, 679, 709, 915, 942, 945, 972
Bsc4I CCNNNNNNNGG 5 cut(s) 241, 377, 378, 894, 1169
Bse1I ACTGG 2 cut(s) 852, 1179
Bse21I CCTNAGG 1 cut(s) 918
Bse3DI GCAATG 1 cut(s) 1196
BseBI CCWGG 1 cut(s) 1470
BseDI CCNNGG 8 cut(s) 669, 701, 840, 1239, 1280, 1450, 1468, 1513
BseGI GGATG 6 cut(s) 329, 436, 1183, 1273, 1290, 1388
BseLI CCNNNNNNNGG 5 cut(s) 241, 377, 378, 894, 1169
BseMI GCAATG 1 cut(s) 1196
BseMII CTCAG 3 cut(s) 128, 303, 932
BseNI ACTGG 2 cut(s) 852, 1179
BseRI GAGGAG 2 cut(s) 21, 147
BseXI GCAGC 5 cut(s) 128, 439, 450, 1092, 1275
BsgI GTGCAG 2 cut(s) 560, 626
Bsh1236I CGCG 2 cut(s) 336, 492
BshFI GGCC 5 cut(s) 674, 700, 861, 1354, 1512
BsiHKAI GWGCWC 1 cut(s) 209
BsiSI CCGG 3 cut(s) 210, 242, 362
BslFI GGGAC 5 cut(s) 46, 63, 532, 899, 1185
BslI CCNNNNNNNGG 5 cut(s) 241, 377, 378, 894, 1169
BsmAI GTCTC 4 cut(s) 292, 778, 798, 1270
BsmFI GGGAC 5 cut(s) 46, 63, 532, 899, 1185
BsnI GGCC 5 cut(s) 674, 700, 861, 1354, 1512
Bso31I GGTCTC 1 cut(s) 1270
Bsp119I TTCGAA 1 cut(s) 198
Bsp1286I GDGCHC 2 cut(s) 143, 209
Bsp143I GATC 4 cut(s) 1128, 1136, 1156, 1314
Bsp19I CCATGG 2 cut(s) 1280, 1450
BspANI GGCC 5 cut(s) 674, 700, 861, 1354, 1512
BspCNI CTCAG 3 cut(s) 129, 302, 931
BspFNI CGCG 2 cut(s) 336, 492
BspLI GGNNCC 3 cut(s) 846, 1474, 1511
BspMI ACCTGC 4 cut(s) 59, 182, 598, 984
BspPI GGATC 3 cut(s) 1136, 1144, 1151
BspT104I TTCGAA 1 cut(s) 198
BspTNI GGTCTC 1 cut(s) 1270
BsrDI GCAATG 1 cut(s) 1196
BsrI ACTGG 2 cut(s) 852, 1179
BssECI CCNNGG 8 cut(s) 669, 701, 840, 1239, 1280, 1450, 1468, 1513
BssMI GATC 4 cut(s) 1128, 1136, 1156, 1314
BssSI CACGAG 1 cut(s) 221
BssT1I CCWWGG 6 cut(s) 669, 701, 840, 1280, 1450, 1513
Bst2BI CACGAG 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 1470
Bst4CI ACNGT 4 cut(s) 239, 280, 308, 1051
Bst6I CTCTTC 1 cut(s) 1268
BstAPI GCANNNNNTGC 1 cut(s) 932
BstBAI YACGTR 1 cut(s) 58
BstBI TTCGAA 1 cut(s) 198
BstC8I GCNNGC 5 cut(s) 191, 666, 1061, 1091, 1293
BstDEI CTNAG 4 cut(s) 137, 289, 918, 1230
BstDSI CCRYGG 2 cut(s) 1280, 1450
BstF5I GGATG 6 cut(s) 329, 436, 1183, 1273, 1290, 1388
BstFNI CGCG 2 cut(s) 336, 492
BstHHI GCGC 2 cut(s) 179, 338
BstKTI GATC 4 cut(s) 1131, 1139, 1159, 1317
BstMAI GTCTC 4 cut(s) 292, 778, 798, 1270
BstMBI GATC 4 cut(s) 1128, 1136, 1156, 1314
BstMWI GCNNNNNNNGC 7 cut(s) 82, 344, 898, 932, 1086, 1301, 1518
BstNI CCWGG 1 cut(s) 1470
BstNSI RCATGY 1 cut(s) 821
BstSCI CCNGG 2 cut(s) 209, 1468
BstUI CGCG 2 cut(s) 336, 492
BstV1I GCAGC 5 cut(s) 128, 439, 450, 1092, 1275
BstV2I GAAGAC 1 cut(s) 1052
Bsu36I CCTNAGG 1 cut(s) 918
BsuI GTATCC 1 cut(s) 1045
BsuRI GGCC 5 cut(s) 674, 700, 861, 1354, 1512
BtgI CCRYGG 2 cut(s) 1280, 1450
BtsCI GGATG 6 cut(s) 329, 436, 1183, 1273, 1290, 1388
BtsI GCAGTG 2 cut(s) 78, 184
BtsIMutI CAGTG 3 cut(s) 78, 134, 184
BveI ACCTGC 4 cut(s) 59, 182, 598, 984
Cac8I GCNNGC 5 cut(s) 191, 666, 1061, 1091, 1293
CaiI CAGNNNCTG 1 cut(s) 953
CfoI GCGC 2 cut(s) 179, 338
Cfr13I GGNCC 2 cut(s) 698, 1510
CseI GACGC 1 cut(s) 65
Csp6I GTAC 3 cut(s) 110, 216, 1145
CviAII CATG 6 cut(s) 818, 1132, 1281, 1350, 1431, 1451
CviQI GTAC 3 cut(s) 110, 216, 1145
DdeI CTNAG 4 cut(s) 137, 289, 918, 1230
DpnI GATC 4 cut(s) 1130, 1138, 1158, 1316
DpnII GATC 4 cut(s) 1128, 1136, 1156, 1314
EaeI YGGCCR 2 cut(s) 672, 859
Eam1104I CTCTTC 1 cut(s) 1268
EarI CTCTTC 1 cut(s) 1268
EciI GGCGGA 2 cut(s) 24, 150
Eco130I CCWWGG 6 cut(s) 669, 701, 840, 1280, 1450, 1513
Eco24I GRGCYC 1 cut(s) 143
Eco31I GGTCTC 1 cut(s) 1270
Eco57I CTGAAG 4 cut(s) 78, 1197, 1290, 1317
Eco72I CACGTG 1 cut(s) 58
Eco81I CCTNAGG 1 cut(s) 918
EcoRI GAATTC 1 cut(s) 625
EcoRII CCWGG 1 cut(s) 1468
EcoT14I CCWWGG 6 cut(s) 669, 701, 840, 1280, 1450, 1513
EcoT22I ATGCAT 3 cut(s) 1010, 1183, 1198
EcoT38I GRGCYC 1 cut(s) 143
ErhI CCWWGG 6 cut(s) 669, 701, 840, 1280, 1450, 1513
FaeI CATG 6 cut(s) 821, 1135, 1284, 1353, 1434, 1454
FalI AAGNNNNNCTT 3 cut(s) 1104, 1136, 1544
FaqI GGGAC 5 cut(s) 46, 63, 532, 899, 1185
FatI CATG 6 cut(s) 817, 1131, 1280, 1349, 1430, 1450
FauI CCCGC 3 cut(s) 90, 198, 583
FauNDI CATATG 1 cut(s) 502
Fnu4HI GCNGC 7 cut(s) 117, 164, 167, 453, 464, 1081, 1289
FokI GGATG 6 cut(s) 336, 423, 1190, 1280, 1297, 1395
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 7 cut(s) 117, 164, 167, 453, 464, 1081, 1289
FspBI CTAG 3 cut(s) 144, 1164, 1422
GlaI GCGC 2 cut(s) 178, 337
GluI GCNGC 7 cut(s) 117, 164, 167, 453, 464, 1081, 1289
HaeIII GGCC 5 cut(s) 674, 700, 861, 1354, 1512
HapII CCGG 3 cut(s) 210, 242, 362
HgaI GACGC 1 cut(s) 65
HhaI GCGC 2 cut(s) 179, 338
Hin1II CATG 6 cut(s) 821, 1135, 1284, 1353, 1434, 1454
Hin6I GCGC 2 cut(s) 177, 336
HinP1I GCGC 2 cut(s) 177, 336
HincII GTYRAC 1 cut(s) 1054
HindII GTYRAC 1 cut(s) 1054
HindIII AAGCTT 2 cut(s) 1302, 1390
HinfI GANTC 4 cut(s) 200, 285, 721, 1025
HpaII CCGG 3 cut(s) 210, 242, 362
HphI GGTGA 3 cut(s) 40, 351, 536
Hpy166II GTNNAC 2 cut(s) 216, 1054
Hpy188III TCNNGA 4 cut(s) 274, 389, 630, 1504
Hpy8I GTNNAC 2 cut(s) 216, 1054
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 2 cut(s) 135, 581
HpyCH4III ACNGT 4 cut(s) 239, 280, 308, 1051
HpyCH4IV ACGT 1 cut(s) 57
HpyF10VI GCNNNNNNNGC 7 cut(s) 82, 344, 898, 932, 1086, 1301, 1518
HpyF3I CTNAG 4 cut(s) 137, 289, 918, 1230
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 6 cut(s) 821, 1135, 1284, 1353, 1434, 1454
HspAI GCGC 2 cut(s) 177, 336
Kzo9I GATC 4 cut(s) 1128, 1136, 1156, 1314
LmnI GCTCC 5 cut(s) 212, 460, 850, 923, 950
Lsp1109I GCAGC 5 cut(s) 128, 439, 450, 1092, 1275
LweI GCATC 9 cut(s) 935, 995, 1092, 1102, 1168, 1183, 1190, 1275, 1491
MaeI CTAG 3 cut(s) 144, 1164, 1422
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 2 cut(s) 550, 979
MalI GATC 4 cut(s) 1130, 1138, 1158, 1316
MboI GATC 4 cut(s) 1128, 1136, 1156, 1314
MboII GAAGA 6 cut(s) 262, 521, 1057, 1285, 1349, 1564
MhlI GDGCHC 2 cut(s) 143, 209
MlsI TGGCCA 2 cut(s) 674, 861
MluCI AATT 9 cut(s) 314, 625, 640, 676, 765, 828, 960, 1326, 1459
MluI ACGCGT 1 cut(s) 490
MluNI TGGCCA 2 cut(s) 674, 861
MlyI GAGTC 1 cut(s) 294
MmeI TCCRAC 2 cut(s) 262, 802
Mox20I TGGCCA 2 cut(s) 674, 861
Mph1103I ATGCAT 3 cut(s) 1010, 1183, 1198
MscI TGGCCA 2 cut(s) 674, 861
MseI TTAA 2 cut(s) 468, 1017
Msp20I TGGCCA 2 cut(s) 674, 861
MspA1I CMGCKG 1 cut(s) 1089
MspI CCGG 3 cut(s) 210, 242, 362
MspR9I CCNGG 2 cut(s) 211, 1470
MvaI CCWGG 1 cut(s) 1470
MvnI CGCG 2 cut(s) 336, 492
MwoI GCNNNNNNNGC 7 cut(s) 82, 344, 898, 932, 1086, 1301, 1518
NciI CCSGG 1 cut(s) 211
NcoI CCATGG 2 cut(s) 1280, 1450
NdeI CATATG 1 cut(s) 502
NdeII GATC 4 cut(s) 1128, 1136, 1156, 1314
NlaIII CATG 6 cut(s) 821, 1135, 1284, 1353, 1434, 1454
NlaIV GGNNCC 3 cut(s) 846, 1474, 1511
NmeAIII GCCGAG 1 cut(s) 672
NmuCI GTSAC 2 cut(s) 550, 979
NsiI ATGCAT 3 cut(s) 1010, 1183, 1198
NspI RCATGY 1 cut(s) 821
NspV TTCGAA 1 cut(s) 198
PaqCI CACCTGC 1 cut(s) 59
PciI ACATGT 1 cut(s) 817
PfeI GAWTC 3 cut(s) 200, 721, 1025
PkrI GCNGC 7 cut(s) 118, 165, 168, 454, 465, 1082, 1290
PleI GAGTC 1 cut(s) 293
PmaCI CACGTG 1 cut(s) 58
PmlI CACGTG 1 cut(s) 58
PpsI GAGTC 1 cut(s) 293
Ppu21I YACGTR 1 cut(s) 58
PscI ACATGT 1 cut(s) 817
PshBI ATTAAT 1 cut(s) 1017
Psp6I CCWGG 1 cut(s) 1468
PspCI CACGTG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 1468
PspN4I GGNNCC 3 cut(s) 846, 1474, 1511
PspPI GGNCC 2 cut(s) 698, 1510
PstNI CAGNNNCTG 1 cut(s) 953
PvuII CAGCTG 1 cut(s) 1089
RsaI GTAC 3 cut(s) 111, 217, 1146
RsaNI GTAC 3 cut(s) 110, 216, 1145
SaqAI TTAA 2 cut(s) 468, 1017
SatI GCNGC 7 cut(s) 117, 164, 167, 453, 464, 1081, 1289
Sau3AI GATC 4 cut(s) 1128, 1136, 1156, 1314
Sau96I GGNCC 2 cut(s) 698, 1510
SchI GAGTC 1 cut(s) 294
ScrFI CCNGG 2 cut(s) 211, 1470
SduI GDGCHC 2 cut(s) 143, 209
SfaNI GCATC 9 cut(s) 935, 995, 1092, 1102, 1168, 1183, 1190, 1275, 1491
SfuI TTCGAA 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 1255
SmoI CTYRAG 1 cut(s) 1255
Sse9I AATT 9 cut(s) 314, 625, 640, 676, 765, 828, 960, 1326, 1459
SspMI CTAG 3 cut(s) 144, 1164, 1422
StyD4I CCNGG 2 cut(s) 209, 1468
StyI CCWWGG 6 cut(s) 669, 701, 840, 1280, 1450, 1513
TaaI ACNGT 4 cut(s) 239, 280, 308, 1051
TaiI ACGT 1 cut(s) 60
TaqI TCGA 5 cut(s) 198, 252, 1003, 1155, 1485
TasI AATT 9 cut(s) 314, 625, 640, 676, 765, 828, 960, 1326, 1459
TatI WGTACW 1 cut(s) 1144
TauI GCSGC 2 cut(s) 166, 169
TfiI GAWTC 3 cut(s) 200, 721, 1025
Tru1I TTAA 2 cut(s) 468, 1017
Tru9I TTAA 2 cut(s) 468, 1017
TscAI CASTG 3 cut(s) 78, 141, 191
TseFI GTSAC 2 cut(s) 550, 979
TseI GCWGC 5 cut(s) 116, 452, 463, 1080, 1288
Tsp45I GTSAC 2 cut(s) 550, 979
TspDTI ATGAA 1 cut(s) 522
TspGWI ACGGA 4 cut(s) 10, 14, 278, 837
TspRI CASTG 3 cut(s) 78, 141, 191
VspI ATTAAT 1 cut(s) 1017
XapI RAATTY 2 cut(s) 625, 640
XceI RCATGY 1 cut(s) 821
XspI CTAG 3 cut(s) 144, 1164, 1422
Zsp2I ATGCAT 3 cut(s) 1010, 1183, 1198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.