Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G27180 |
| fragaria_vesca | FvH4_6g53250 |
| malus_domestica | MD09G1012500.v1.1 |
| prunus_persica | Prupe.3G304500_v2.0.a1 |
| pyrus_communis | pycom02g22280 pycom111g01050 pycom16g10840 |
| rosa_chinensis | RchiOBHm_Chr2g0175381 |
| rosa_laevigata | RLG00000022323 |
| rosa_multiflora | Rmu_sc0003512.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00077420 |
| rosa_rugosa | Rorug02G0583500 Rorug02G0583600 |
| rosa_samantha | Rh2AG663700 Rh2BG674500 Rh2CG637700 Rh2DG688500 |
| rosa_wichuraiana | Rw2G054390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 59, 962 |
| Acc36I | ACCTGC | 5 cut(s) | 59, 200, 616, 962, 1002 |
| AccB1I | GGYRCC | 1 cut(s) | 348 |
| AccI | GTMKAC | 1 cut(s) | 270 |
| AccII | CGCG | 3 cut(s) | 57, 372, 473 |
| AccIII | TCCGGA | 1 cut(s) | 912 |
| AclWI | GGATC | 3 cut(s) | 1154, 1162, 1169 |
| AcoI | YGGCCR | 5 cut(s) | 261, 363, 564, 690, 877 |
| AcsI | RAATTY | 2 cut(s) | 643, 667 |
| AcuI | CTGAAG | 1 cut(s) | 1335 |
| AdeI | CACNNNGTG | 1 cut(s) | 748 |
| AfaI | GTAC | 3 cut(s) | 235, 583, 1164 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 259, 395, 912, 1187 |
| AflII | CTTAAG | 1 cut(s) | 485 |
| AgsI | TTSAA | 6 cut(s) | 247, 292, 1269, 1326, 1414, 1522 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1435 |
| AjnI | CCWGG | 2 cut(s) | 1142, 1486 |
| AluBI | AGCT | 9 cut(s) | 449, 481, 919, 1051, 1107, 1247, 1272, 1410, 1514 |
| AluI | AGCT | 9 cut(s) | 449, 481, 919, 1051, 1107, 1247, 1272, 1410, 1514 |
| Alw21I | GWGCWC | 2 cut(s) | 227, 387 |
| Alw26I | GTCTC | 2 cut(s) | 796, 816 |
| AlwI | GGATC | 3 cut(s) | 1154, 1162, 1169 |
| Aor13HI | TCCGGA | 1 cut(s) | 912 |
| AoxI | GGCC | 9 cut(s) | 261, 301, 363, 564, 690, 716, 877, 1295, 1528 |
| ApeKI | GCWGC | 4 cut(s) | 481, 596, 995, 1098 |
| ApoI | RAATTY | 2 cut(s) | 643, 667 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 529, 561 |
| AspA2I | CCTAGG | 1 cut(s) | 298 |
| AspLEI | GCGC | 2 cut(s) | 197, 1455 |
| AspS9I | GGNCC | 2 cut(s) | 716, 1528 |
| AsuHPI | GGTGA | 6 cut(s) | 40, 96, 102, 114, 120, 554 |
| AsuII | TTCGAA | 1 cut(s) | 216 |
| AvrII | CCTAGG | 1 cut(s) | 298 |
| BaeGI | GKGCMC | 1 cut(s) | 416 |
| BalI | TGGCCA | 2 cut(s) | 692, 879 |
| BanI | GGYRCC | 1 cut(s) | 348 |
| BauI | CACGAG | 1 cut(s) | 239 |
| BbsI | GAAGAC | 2 cut(s) | 1070, 1434 |
| Bbv12I | GWGCWC | 2 cut(s) | 227, 387 |
| BbvI | GCAGC | 4 cut(s) | 468, 583, 982, 1110 |
| BccI | CCATC | 8 cut(s) | 272, 336, 556, 741, 792, 874, 1395, 1443 |
| BceAI | ACGGC | 4 cut(s) | 166, 336, 350, 551 |
| BciT130I | CCWGG | 2 cut(s) | 1144, 1488 |
| BcoDI | GTCTC | 2 cut(s) | 796, 816 |
| BfaI | CTAG | 3 cut(s) | 299, 1182, 1248 |
| BfoI | RGCGCY | 1 cut(s) | 1456 |
| BfrI | CTTAAG | 1 cut(s) | 485 |
| BfuAI | ACCTGC | 5 cut(s) | 59, 200, 616, 962, 1002 |
| BisI | GCNGC | 7 cut(s) | 55, 373, 471, 482, 597, 996, 1099 |
| BlnI | CCTAGG | 1 cut(s) | 298 |
| BlsI | GCNGC | 7 cut(s) | 56, 374, 472, 483, 598, 997, 1100 |
| Bme1390I | CCNGG | 2 cut(s) | 1144, 1488 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1435 |
| BmgT120I | GGNCC | 2 cut(s) | 716, 1528 |
| BmiI | GGNNCC | 5 cut(s) | 350, 376, 864, 1134, 1529 |
| BmrFI | CCNGG | 2 cut(s) | 1144, 1488 |
| BmsI | GCATC | 9 cut(s) | 953, 1013, 1110, 1120, 1186, 1201, 1208, 1293, 1509 |
| BpiI | GAAGAC | 2 cut(s) | 1070, 1434 |
| Bpu14I | TTCGAA | 1 cut(s) | 216 |
| BsaAI | YACGTR | 1 cut(s) | 1310 |
| BsaJI | CCNNGG | 9 cut(s) | 298, 378, 471, 687, 719, 858, 1298, 1468, 1486 |
| BsaWI | WCCGGW | 1 cut(s) | 912 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 697, 727, 933, 960, 963, 990 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 259, 395, 912, 1187 |
| Bse1I | ACTGG | 2 cut(s) | 544, 870 |
| Bse3DI | GCAATG | 1 cut(s) | 1214 |
| BseAI | TCCGGA | 1 cut(s) | 912 |
| BseBI | CCWGG | 2 cut(s) | 1144, 1488 |
| BseDI | CCNNGG | 9 cut(s) | 298, 378, 471, 687, 719, 858, 1298, 1468, 1486 |
| BseGI | GGATG | 8 cut(s) | 347, 454, 866, 1201, 1291, 1308, 1406, 1454 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 259, 395, 912, 1187 |
| BseMI | GCAATG | 1 cut(s) | 1214 |
| BseMII | CTCAG | 2 cut(s) | 663, 1251 |
| BseNI | ACTGG | 2 cut(s) | 544, 870 |
| BseRI | GAGGAG | 2 cut(s) | 24, 367 |
| BseSI | GKGCMC | 1 cut(s) | 416 |
| BseXI | GCAGC | 4 cut(s) | 468, 583, 982, 1110 |
| BsgI | GTGCAG | 3 cut(s) | 486, 578, 644 |
| Bsh1236I | CGCG | 3 cut(s) | 57, 372, 473 |
| BshFI | GGCC | 9 cut(s) | 263, 303, 365, 566, 692, 718, 879, 1297, 1530 |
| BshNI | GGYRCC | 1 cut(s) | 348 |
| BsiHKAI | GWGCWC | 2 cut(s) | 227, 387 |
| BsiSI | CCGG | 3 cut(s) | 228, 260, 913 |
| BslFI | GGGAC | 4 cut(s) | 46, 280, 550, 917 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 259, 395, 912, 1187 |
| BsmAI | GTCTC | 2 cut(s) | 796, 816 |
| BsmFI | GGGAC | 4 cut(s) | 46, 280, 550, 917 |
| BsnI | GGCC | 9 cut(s) | 263, 303, 365, 566, 692, 718, 879, 1297, 1530 |
| Bsp119I | TTCGAA | 1 cut(s) | 216 |
| Bsp1286I | GDGCHC | 3 cut(s) | 227, 387, 416 |
| Bsp13I | TCCGGA | 1 cut(s) | 912 |
| Bsp143I | GATC | 3 cut(s) | 1146, 1154, 1174 |
| Bsp19I | CCATGG | 2 cut(s) | 1298, 1468 |
| BspANI | GGCC | 9 cut(s) | 263, 303, 365, 566, 692, 718, 879, 1297, 1530 |
| BspCNI | CTCAG | 2 cut(s) | 664, 1252 |
| BspEI | TCCGGA | 1 cut(s) | 912 |
| BspFNI | CGCG | 3 cut(s) | 57, 372, 473 |
| BspLI | GGNNCC | 5 cut(s) | 350, 376, 864, 1134, 1529 |
| BspMI | ACCTGC | 5 cut(s) | 59, 200, 616, 962, 1002 |
| BspPI | GGATC | 3 cut(s) | 1154, 1162, 1169 |
| BspT104I | TTCGAA | 1 cut(s) | 216 |
| BspT107I | GGYRCC | 1 cut(s) | 348 |
| BspTI | CTTAAG | 1 cut(s) | 485 |
| BsrDI | GCAATG | 1 cut(s) | 1214 |
| BsrI | ACTGG | 2 cut(s) | 544, 870 |
| BssECI | CCNNGG | 9 cut(s) | 298, 378, 471, 687, 719, 858, 1298, 1468, 1486 |
| BssMI | GATC | 3 cut(s) | 1146, 1154, 1174 |
| BssSI | CACGAG | 1 cut(s) | 239 |
| BssT1I | CCWWGG | 6 cut(s) | 298, 687, 719, 858, 1298, 1468 |
| Bst2BI | CACGAG | 1 cut(s) | 239 |
| Bst2UI | CCWGG | 2 cut(s) | 1144, 1488 |
| Bst4CI | ACNGT | 9 cut(s) | 108, 120, 126, 222, 257, 326, 336, 581, 1069 |
| Bst6I | CTCTTC | 2 cut(s) | 594, 1286 |
| BstAFI | CTTAAG | 1 cut(s) | 485 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 950 |
| BstBAI | YACGTR | 1 cut(s) | 1310 |
| BstBI | TTCGAA | 1 cut(s) | 216 |
| BstC8I | GCNNGC | 3 cut(s) | 684, 1079, 1109 |
| BstDEI | CTNAG | 5 cut(s) | 158, 506, 672, 1128, 1260 |
| BstDSI | CCRYGG | 3 cut(s) | 471, 1298, 1468 |
| BstF5I | GGATG | 8 cut(s) | 347, 454, 866, 1201, 1291, 1308, 1406, 1454 |
| BstFNI | CGCG | 3 cut(s) | 57, 372, 473 |
| BstH2I | RGCGCY | 1 cut(s) | 1456 |
| BstHHI | GCGC | 2 cut(s) | 197, 1455 |
| BstKTI | GATC | 3 cut(s) | 1149, 1157, 1177 |
| BstMAI | GTCTC | 2 cut(s) | 796, 816 |
| BstMBI | GATC | 3 cut(s) | 1146, 1154, 1174 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 362, 556, 916, 950, 1104, 1303, 1497 |
| BstNI | CCWGG | 2 cut(s) | 1144, 1488 |
| BstNSI | RCATGY | 1 cut(s) | 839 |
| BstSCI | CCNGG | 2 cut(s) | 1142, 1486 |
| BstSLI | GKGCMC | 1 cut(s) | 416 |
| BstUI | CGCG | 3 cut(s) | 57, 372, 473 |
| BstV1I | GCAGC | 4 cut(s) | 468, 583, 982, 1110 |
| BstV2I | GAAGAC | 2 cut(s) | 1070, 1434 |
| BsuRI | GGCC | 9 cut(s) | 263, 303, 365, 566, 692, 718, 879, 1297, 1530 |
| BtgI | CCRYGG | 3 cut(s) | 471, 1298, 1468 |
| BtsCI | GGATG | 8 cut(s) | 347, 454, 866, 1201, 1291, 1308, 1406, 1454 |
| BtsI | GCAGTG | 1 cut(s) | 202 |
| BtsIMutI | CAGTG | 1 cut(s) | 202 |
| BveI | ACCTGC | 5 cut(s) | 59, 200, 616, 962, 1002 |
| Cac8I | GCNNGC | 3 cut(s) | 684, 1079, 1109 |
| CfoI | GCGC | 2 cut(s) | 197, 1455 |
| Cfr13I | GGNCC | 2 cut(s) | 716, 1528 |
| Cfr42I | CCGCGG | 1 cut(s) | 474 |
| Csp6I | GTAC | 3 cut(s) | 234, 582, 1163 |
| CviAII | CATG | 5 cut(s) | 836, 1115, 1150, 1299, 1469 |
| CviQI | GTAC | 3 cut(s) | 234, 582, 1163 |
| DdeI | CTNAG | 5 cut(s) | 158, 506, 672, 1128, 1260 |
| DpnI | GATC | 3 cut(s) | 1148, 1156, 1176 |
| DpnII | GATC | 3 cut(s) | 1146, 1154, 1174 |
| DraIII | CACNNNGTG | 1 cut(s) | 748 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1435 |
| EaeI | YGGCCR | 5 cut(s) | 261, 363, 564, 690, 877 |
| Eam1104I | CTCTTC | 2 cut(s) | 594, 1286 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1435 |
| EarI | CTCTTC | 2 cut(s) | 594, 1286 |
| EciI | GGCGGA | 1 cut(s) | 27 |
| Eco130I | CCWWGG | 6 cut(s) | 298, 687, 719, 858, 1298, 1468 |
| Eco147I | AGGCCT | 1 cut(s) | 303 |
| Eco57I | CTGAAG | 1 cut(s) | 1335 |
| EcoRI | GAATTC | 1 cut(s) | 643 |
| EcoRII | CCWGG | 2 cut(s) | 1142, 1486 |
| EcoT14I | CCWWGG | 6 cut(s) | 298, 687, 719, 858, 1298, 1468 |
| EcoT22I | ATGCAT | 3 cut(s) | 1028, 1201, 1216 |
| ErhI | CCWWGG | 6 cut(s) | 298, 687, 719, 858, 1298, 1468 |
| FaeI | CATG | 5 cut(s) | 839, 1118, 1153, 1302, 1472 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 1040, 1072, 1562 |
| FaqI | GGGAC | 4 cut(s) | 46, 280, 550, 917 |
| FatI | CATG | 5 cut(s) | 835, 1114, 1149, 1298, 1468 |
| FauI | CCCGC | 1 cut(s) | 32 |
| FauNDI | CATATG | 1 cut(s) | 520 |
| FblI | GTMKAC | 1 cut(s) | 270 |
| Fnu4HI | GCNGC | 7 cut(s) | 55, 373, 471, 482, 597, 996, 1099 |
| FokI | GGATG | 8 cut(s) | 354, 441, 853, 1208, 1298, 1315, 1413, 1461 |
| Fsp4HI | GCNGC | 7 cut(s) | 55, 373, 471, 482, 597, 996, 1099 |
| FspBI | CTAG | 3 cut(s) | 299, 1182, 1248 |
| GlaI | GCGC | 2 cut(s) | 196, 1454 |
| GluI | GCNGC | 7 cut(s) | 55, 373, 471, 482, 597, 996, 1099 |
| HaeII | RGCGCY | 1 cut(s) | 1456 |
| HaeIII | GGCC | 9 cut(s) | 263, 303, 365, 566, 692, 718, 879, 1297, 1530 |
| HapII | CCGG | 3 cut(s) | 228, 260, 913 |
| HhaI | GCGC | 2 cut(s) | 197, 1455 |
| Hin1II | CATG | 5 cut(s) | 839, 1118, 1153, 1302, 1472 |
| Hin6I | GCGC | 2 cut(s) | 195, 1453 |
| HinP1I | GCGC | 2 cut(s) | 195, 1453 |
| HincII | GTYRAC | 2 cut(s) | 271, 1072 |
| HindII | GTYRAC | 2 cut(s) | 271, 1072 |
| HindIII | AAGCTT | 1 cut(s) | 1408 |
| HinfI | GANTC | 3 cut(s) | 739, 1043, 1322 |
| HpaII | CCGG | 3 cut(s) | 228, 260, 913 |
| HphI | GGTGA | 6 cut(s) | 40, 96, 102, 114, 120, 554 |
| Hpy166II | GTNNAC | 3 cut(s) | 271, 1072, 1540 |
| Hpy188III | TCNNGA | 7 cut(s) | 239, 407, 437, 648, 913, 1193, 1522 |
| Hpy8I | GTNNAC | 3 cut(s) | 271, 1072, 1540 |
| Hpy99I | CGWCG | 3 cut(s) | 187, 272, 275 |
| HpyAV | CCTTC | 4 cut(s) | 38, 99, 105, 141 |
| HpyCH4III | ACNGT | 9 cut(s) | 108, 120, 126, 222, 257, 326, 336, 581, 1069 |
| HpyCH4IV | ACGT | 1 cut(s) | 1309 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 362, 556, 916, 950, 1104, 1303, 1497 |
| HpyF3I | CTNAG | 5 cut(s) | 158, 506, 672, 1128, 1260 |
| HpySE526I | ACGT | 1 cut(s) | 1309 |
| Hsp92II | CATG | 5 cut(s) | 839, 1118, 1153, 1302, 1472 |
| HspAI | GCGC | 2 cut(s) | 195, 1453 |
| Kpn2I | TCCGGA | 1 cut(s) | 912 |
| KspI | CCGCGG | 1 cut(s) | 474 |
| Kzo9I | GATC | 3 cut(s) | 1146, 1154, 1174 |
| LmnI | GCTCC | 8 cut(s) | 230, 380, 382, 832, 868, 915, 941, 968 |
| Lsp1109I | GCAGC | 4 cut(s) | 468, 583, 982, 1110 |
| LweI | GCATC | 9 cut(s) | 953, 1013, 1110, 1120, 1186, 1201, 1208, 1293, 1509 |
| MaeI | CTAG | 3 cut(s) | 299, 1182, 1248 |
| MaeII | ACGT | 1 cut(s) | 1309 |
| MaeIII | GTNAC | 6 cut(s) | 102, 108, 120, 126, 568, 773 |
| MalI | GATC | 3 cut(s) | 1148, 1156, 1176 |
| MboI | GATC | 3 cut(s) | 1146, 1154, 1174 |
| MhlI | GDGCHC | 3 cut(s) | 227, 387, 416 |
| MlsI | TGGCCA | 2 cut(s) | 692, 879 |
| MluCI | AATT | 7 cut(s) | 359, 643, 667, 694, 846, 1326, 1477 |
| MluNI | TGGCCA | 2 cut(s) | 692, 879 |
| MmeI | TCCRAC | 1 cut(s) | 820 |
| Mox20I | TGGCCA | 2 cut(s) | 692, 879 |
| Mph1103I | ATGCAT | 3 cut(s) | 1028, 1201, 1216 |
| MroI | TCCGGA | 1 cut(s) | 912 |
| MscI | TGGCCA | 2 cut(s) | 692, 879 |
| MseI | TTAA | 3 cut(s) | 486, 1035, 1476 |
| Msp20I | TGGCCA | 2 cut(s) | 692, 879 |
| MspA1I | CMGCKG | 2 cut(s) | 473, 1107 |
| MspCI | CTTAAG | 1 cut(s) | 485 |
| MspI | CCGG | 3 cut(s) | 228, 260, 913 |
| MspR9I | CCNGG | 2 cut(s) | 1144, 1488 |
| MvaI | CCWGG | 2 cut(s) | 1144, 1488 |
| MvnI | CGCG | 3 cut(s) | 57, 372, 473 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 362, 556, 916, 950, 1104, 1303, 1497 |
| NcoI | CCATGG | 2 cut(s) | 1298, 1468 |
| NdeI | CATATG | 1 cut(s) | 520 |
| NdeII | GATC | 3 cut(s) | 1146, 1154, 1174 |
| NlaIII | CATG | 5 cut(s) | 839, 1118, 1153, 1302, 1472 |
| NlaIV | GGNNCC | 5 cut(s) | 350, 376, 864, 1134, 1529 |
| NmuCI | GTSAC | 4 cut(s) | 102, 108, 120, 126 |
| NsiI | ATGCAT | 3 cut(s) | 1028, 1201, 1216 |
| NspI | RCATGY | 1 cut(s) | 839 |
| NspV | TTCGAA | 1 cut(s) | 216 |
| PaqCI | CACCTGC | 2 cut(s) | 59, 962 |
| PceI | AGGCCT | 1 cut(s) | 303 |
| PfeI | GAWTC | 3 cut(s) | 739, 1043, 1322 |
| PfoI | TCCNGGA | 1 cut(s) | 1142 |
| PkrI | GCNGC | 7 cut(s) | 56, 374, 472, 483, 598, 997, 1100 |
| Ppu21I | YACGTR | 1 cut(s) | 1310 |
| Psp6I | CCWGG | 2 cut(s) | 1142, 1486 |
| PspGI | CCWGG | 2 cut(s) | 1142, 1486 |
| PspN4I | GGNNCC | 5 cut(s) | 350, 376, 864, 1134, 1529 |
| PspPI | GGNCC | 2 cut(s) | 716, 1528 |
| PvuII | CAGCTG | 1 cut(s) | 1107 |
| RsaI | GTAC | 3 cut(s) | 235, 583, 1164 |
| RsaNI | GTAC | 3 cut(s) | 234, 582, 1163 |
| SacII | CCGCGG | 1 cut(s) | 474 |
| SalI | GTCGAC | 1 cut(s) | 269 |
| SaqAI | TTAA | 3 cut(s) | 486, 1035, 1476 |
| SatI | GCNGC | 7 cut(s) | 55, 373, 471, 482, 597, 996, 1099 |
| Sau3AI | GATC | 3 cut(s) | 1146, 1154, 1174 |
| Sau96I | GGNCC | 2 cut(s) | 716, 1528 |
| ScrFI | CCNGG | 2 cut(s) | 1144, 1488 |
| SduI | GDGCHC | 3 cut(s) | 227, 387, 416 |
| SfaNI | GCATC | 9 cut(s) | 953, 1013, 1110, 1120, 1186, 1201, 1208, 1293, 1509 |
| Sfr303I | CCGCGG | 1 cut(s) | 474 |
| SfuI | TTCGAA | 1 cut(s) | 216 |
| SgrBI | CCGCGG | 1 cut(s) | 474 |
| SgrDI | CGTCGACG | 1 cut(s) | 269 |
| SmlI | CTYRAG | 1 cut(s) | 485 |
| SmoI | CTYRAG | 1 cut(s) | 485 |
| Sse9I | AATT | 7 cut(s) | 359, 643, 667, 694, 846, 1326, 1477 |
| SseBI | AGGCCT | 1 cut(s) | 303 |
| SspMI | CTAG | 3 cut(s) | 299, 1182, 1248 |
| StuI | AGGCCT | 1 cut(s) | 303 |
| StyD4I | CCNGG | 2 cut(s) | 1142, 1486 |
| StyI | CCWWGG | 6 cut(s) | 298, 687, 719, 858, 1298, 1468 |
| TaaI | ACNGT | 9 cut(s) | 108, 120, 126, 222, 257, 326, 336, 581, 1069 |
| TaiI | ACGT | 1 cut(s) | 1312 |
| TaqI | TCGA | 5 cut(s) | 216, 270, 321, 647, 1503 |
| TasI | AATT | 7 cut(s) | 359, 643, 667, 694, 846, 1326, 1477 |
| TatI | WGTACW | 3 cut(s) | 233, 581, 1162 |
| TauI | GCSGC | 3 cut(s) | 57, 375, 473 |
| TfiI | GAWTC | 3 cut(s) | 739, 1043, 1322 |
| Tru1I | TTAA | 3 cut(s) | 486, 1035, 1476 |
| Tru9I | TTAA | 3 cut(s) | 486, 1035, 1476 |
| TscAI | CASTG | 1 cut(s) | 209 |
| TseFI | GTSAC | 4 cut(s) | 102, 108, 120, 126 |
| TseI | GCWGC | 4 cut(s) | 481, 596, 995, 1098 |
| Tsp45I | GTSAC | 4 cut(s) | 102, 108, 120, 126 |
| TspDTI | ATGAA | 2 cut(s) | 540, 669 |
| TspGWI | ACGGA | 1 cut(s) | 90 |
| TspRI | CASTG | 1 cut(s) | 209 |
| Vha464I | CTTAAG | 1 cut(s) | 485 |
| XapI | RAATTY | 2 cut(s) | 643, 667 |
| XceI | RCATGY | 1 cut(s) | 839 |
| XmaJI | CCTAGG | 1 cut(s) | 298 |
| XmiI | GTMKAC | 1 cut(s) | 270 |
| XspI | CTAG | 3 cut(s) | 299, 1182, 1248 |
| Zsp2I | ATGCAT | 3 cut(s) | 1028, 1201, 1216 |