Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011982

Physical Location & Seq

Genomic Coordinates Forward (+)

10076809 .. 10078608

Gene Structure 1800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G27280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGGAAGTCAACAAGTAGCGATTTCGTTTCTGACGAACTTGGCGAAGGCGGCGTTTGGGTTAGGTGTGGCGGCGACGGCACTAAACTCGTCGCTCTACACTGTTGATGGTGGCGAGAGAGCTGTTTTGTTCGATCGATTCAGGGGAGTGTTGGATCAGACCGTCGGCGAAGGGACTCATTTCTTGATCCCGTATCTCCAGACGCCGCACATATACGATATTCGTACGAAACCTCACACTTTCTCCTCCAAATCTGGTACTAAGGATCTTCAGATGGTTAATCTCACCCTTCGTGTTCTCTTTCGCCCTGAGGTTTCGCGTCTCCCGTACATTTTCCAAACATTGGGTCTTGAATACGATGAGAAGGTTCTTCCATCGATTGGAAATGAGGTCTTGAAAGCTGTGGTTGCTAATTTCAATGCTGATCAGCTCCTCACTGAGCGTCCTCAAGTATCAGCACTTGTTCGTGATGCTCTTATCAAGCGTGCCAGGGAATTTAACATTGAGCTCGACGACATAGCCATTACTCACTTATCGTACGGTGCTGAGTTCTCGAGGGCAGTGGAGGCGAAGCAAGTGGCTCAGCAGGAAGCTGAAAGGTCAAAGTTTGTGGTGATGAAGGCTGATCAAGAGAGGAGAGCTGCGGTTATAAGAGCAGAAGGTGAGAGTGAAGCTGCTCAGTTGATATCAGATGCAACAGCTAAAGCAGGAATGGGACTAATTGAGCTTAGGAGGATTGAAGCTTCAAGGGAGGTTGCGGCTACTCTGGCTAGGTCTCCGAACGTGGCTTACTTACCTGGTGGACAAAGCATGCTCTTTAATCTGAACCCTGGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0016020 GO:0016043 GO:0019866 GO:0022622 GO:0030312 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051302 GO:0051782 GO:0065007 GO:0070013 GO:0070469 GO:0071731 GO:0071840 GO:0071944 GO:0090696 GO:0097366 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:0099402 GO:1901698 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

279

Amino Acids

30.64

Weight (kDa)

6.94

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	34 - 221	2.9e-30	SPFH domain / Band 7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27280 AT3G27280 AT5G40770
fragaria_vesca	FvH4_6g52780
malus_domestica	MD09G1016800.v1.1 MD17G1017200.v1.1
prunus_persica	Prupe.3G300700_v2.0.a1 Prupe.3G300700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0174411
rosa_laevigata	RLG00000022263
rosa_multiflora	Rmu_co8273923.1_g000001 Rmu_sc0003649.1_g000029
rosa_roxburghii	Rroxscaffold_2G00078240
rosa_rugosa	Rorug02G0576500
rosa_samantha	Rh2AG657700 Rh2BG668800 Rh2CG631700 Rh2DG682300
rosa_wichuraiana	Rw2G053870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	650
AccB7I	CCANNNNNTGG	2 cut(s)	343, 380
AccII	CGCG	1 cut(s)	319
AciI	CCGC	5 cut(s)	50, 71, 206, 644, 758
AclWI	GGATC	3 cut(s)	162, 181, 273
AcsI	RAATTY	1 cut(s)	494
AcuI	CTGAAG	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	203
AfaI	GTAC	4 cut(s)	226, 259, 329, 539
AfiI	CCNNNNNNNGG	2 cut(s)	343, 380
AgsI	TTSAA	5 cut(s)	353, 397, 418, 740, 747
AjnI	CCWGG	3 cut(s)	488, 796, 829
Alw21I	GWGCWC	1 cut(s)	510
Alw26I	GTCTC	2 cut(s)	326, 780
AlwI	GGATC	3 cut(s)	162, 181, 273
Ama87I	CYCGRG	1 cut(s)	553
ApeKI	GCWGC	2 cut(s)	641, 674
ApoI	RAATTY	1 cut(s)	494
ArsI	GACNNNNNNTTYG	2 cut(s)	331, 363
AsuHPI	GGTGA	3 cut(s)	277, 625, 674
AvaI	CYCGRG	1 cut(s)	553
AxyI	CCTNAGG	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	510
Bbv12I	GWGCWC	1 cut(s)	510
BbvI	GCAGC	2 cut(s)	628, 661
BccI	CCATC	3 cut(s)	101, 268, 382
BceAI	ACGGC	1 cut(s)	93
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BciT130I	CCWGG	3 cut(s)	490, 798, 831
BclI	TGATCA	2 cut(s)	424, 625
BcoDI	GTCTC	2 cut(s)	326, 780
BfaI	CTAG	1 cut(s)	771
BisI	GCNGC	6 cut(s)	51, 72, 206, 642, 675, 759
BlpI	GCTNAGC	1 cut(s)	582
BlsI	GCNGC	6 cut(s)	52, 73, 207, 643, 676, 760
Bme1390I	CCNGG	3 cut(s)	490, 798, 831
BmeT110I	CYCGRG	1 cut(s)	553
BmrFI	CCNGG	3 cut(s)	490, 798, 831
BmsI	GCATC	2 cut(s)	460, 682
BpmI	CTGGAG	1 cut(s)	182
Bpu10I	CCTNAGC	1 cut(s)	728
Bpu1102I	GCTNAGC	1 cut(s)	582
BpuEI	CTTGAG	1 cut(s)	432
Bsa29I	ATCGAT	2 cut(s)	136, 377
BsaHI	GRCGYC	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	780
BsaJI	CCNNGG	2 cut(s)	489, 829
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	2 cut(s)	343, 380
Bse21I	CCTNAGG	1 cut(s)	309
BseBI	CCWGG	3 cut(s)	490, 798, 831
BseCI	ATCGAT	2 cut(s)	136, 377
BseDI	CCNNGG	2 cut(s)	489, 829
BseLI	CCNNNNNNNGG	2 cut(s)	343, 380
BseMII	CTCAG	5 cut(s)	300, 429, 537, 596, 692
BseRI	GAGGAG	3 cut(s)	235, 422, 649
BseXI	GCAGC	2 cut(s)	628, 661
Bsh1236I	CGCG	1 cut(s)	319
Bsh1285I	CGRYCG	1 cut(s)	136
BshVI	ATCGAT	2 cut(s)	136, 377
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	510
BsiHKCI	CYCGRG	1 cut(s)	553
BsiWI	CGTACG	2 cut(s)	224, 537
BslFI	GGGAC	2 cut(s)	187, 729
BslI	CCNNNNNNNGG	2 cut(s)	343, 380
BsmAI	GTCTC	2 cut(s)	326, 780
BsmBI	CGTCTC	1 cut(s)	326
BsmFI	GGGAC	2 cut(s)	187, 729
Bso31I	GGTCTC	1 cut(s)	780
BsoBI	CYCGRG	1 cut(s)	553
Bsp1286I	GDGCHC	1 cut(s)	510
Bsp143I	GATC	6 cut(s)	133, 154, 186, 265, 424, 625
Bsp1720I	GCTNAGC	1 cut(s)	582
BspACI	CCGC	5 cut(s)	50, 71, 206, 644, 758
BspCNI	CTCAG	5 cut(s)	301, 430, 538, 595, 691
BspDI	ATCGAT	2 cut(s)	136, 377
BspFNI	CGCG	1 cut(s)	319
BspPI	GGATC	3 cut(s)	162, 181, 273
BspTNI	GGTCTC	1 cut(s)	780
BssECI	CCNNGG	2 cut(s)	489, 829
BssMI	GATC	6 cut(s)	133, 154, 186, 265, 424, 625
BssNI	GRCGYC	1 cut(s)	203
Bst2UI	CCWGG	3 cut(s)	490, 798, 831
Bst4CI	ACNGT	3 cut(s)	103, 163, 542
BstACI	GRCGYC	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	486, 812
BstDEI	CTNAG	7 cut(s)	261, 309, 438, 546, 582, 678, 728
BstFNI	CGCG	1 cut(s)	319
BstKTI	GATC	6 cut(s)	136, 157, 189, 268, 427, 628
BstMAI	GTCTC	2 cut(s)	326, 780
BstMBI	GATC	6 cut(s)	133, 154, 186, 265, 424, 625
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 77, 407, 566, 767
BstNI	CCWGG	3 cut(s)	490, 798, 831
BstNSI	RCATGY	1 cut(s)	814
BstSCI	CCNGG	3 cut(s)	488, 796, 829
BstUI	CGCG	1 cut(s)	319
BstV1I	GCAGC	2 cut(s)	628, 661
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
Bsu15I	ATCGAT	2 cut(s)	136, 377
Bsu36I	CCTNAGG	1 cut(s)	309
BsuTUI	ATCGAT	2 cut(s)	136, 377
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	3 cut(s)	99, 435, 567
Cac8I	GCNNGC	2 cut(s)	486, 812
ClaI	ATCGAT	2 cut(s)	136, 377
CseI	GACGC	3 cut(s)	211, 308, 431
CsiI	ACCWGGT	1 cut(s)	796
Csp6I	GTAC	4 cut(s)	225, 258, 328, 538
CspCI	CAANNNNNGTGG	2 cut(s)	591, 626
CviAII	CATG	1 cut(s)	811
CviQI	GTAC	4 cut(s)	225, 258, 328, 538
DdeI	CTNAG	7 cut(s)	261, 309, 438, 546, 582, 678, 728
DpnI	GATC	6 cut(s)	135, 156, 188, 267, 426, 627
DpnII	GATC	6 cut(s)	133, 154, 186, 265, 424, 625
Ecl136II	GAGCTC	1 cut(s)	508
Eco24I	GRGCYC	1 cut(s)	510
Eco31I	GGTCTC	1 cut(s)	780
Eco32I	GATATC	1 cut(s)	687
Eco53kI	GAGCTC	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	254
Eco81I	CCTNAGG	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	553
EcoICRI	GAGCTC	1 cut(s)	508
EcoRII	CCWGG	3 cut(s)	488, 796, 829
EcoRV	GATATC	1 cut(s)	687
EcoT38I	GRGCYC	1 cut(s)	510
Esp3I	CGTCTC	1 cut(s)	326
FaeI	CATG	1 cut(s)	814
FaiI	YATR	5 cut(s)	212, 214, 518, 650, 812
FaqI	GGGAC	2 cut(s)	187, 729
FatI	CATG	1 cut(s)	810
FbaI	TGATCA	2 cut(s)	424, 625
Fnu4HI	GCNGC	6 cut(s)	51, 72, 206, 642, 675, 759
FriOI	GRGCYC	1 cut(s)	510
Fsp4HI	GCNGC	6 cut(s)	51, 72, 206, 642, 675, 759
FspBI	CTAG	1 cut(s)	771
GluI	GCNGC	6 cut(s)	51, 72, 206, 642, 675, 759
GsuI	CTGGAG	1 cut(s)	182
HgaI	GACGC	3 cut(s)	211, 308, 431
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	1 cut(s)	814
HincII	GTYRAC	1 cut(s)	11
HindII	GTYRAC	1 cut(s)	11
HindIII	AAGCTT	1 cut(s)	741
HinfI	GANTC	2 cut(s)	138, 175
HphI	GGTGA	3 cut(s)	277, 625, 674
Hpy166II	GTNNAC	2 cut(s)	11, 803
Hpy188I	TCNGA	6 cut(s)	33, 159, 273, 691, 780, 825
Hpy188III	TCNNGA	7 cut(s)	184, 199, 350, 394, 467, 553, 629
Hpy8I	GTNNAC	2 cut(s)	11, 803
Hpy99I	CGWCG	4 cut(s)	79, 94, 167, 515
HpyAV	CCTTC	6 cut(s)	40, 164, 299, 358, 613, 653
HpyCH4III	ACNGT	3 cut(s)	103, 163, 542
HpyCH4IV	ACGT	1 cut(s)	783
HpyCH4V	TGCA	1 cut(s)	695
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 77, 407, 566, 767
HpyF3I	CTNAG	7 cut(s)	261, 309, 438, 546, 582, 678, 728
HpySE526I	ACGT	1 cut(s)	783
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	1 cut(s)	814
Ksp22I	TGATCA	2 cut(s)	424, 625
Kzo9I	GATC	6 cut(s)	133, 154, 186, 265, 424, 625
LmnI	GCTCC	1 cut(s)	435
Lsp1109I	GCAGC	2 cut(s)	628, 661
LweI	GCATC	2 cut(s)	460, 682
MabI	ACCWGGT	1 cut(s)	796
MaeI	CTAG	1 cut(s)	771
MaeII	ACGT	1 cut(s)	783
MalI	GATC	6 cut(s)	135, 156, 188, 267, 426, 627
MboI	GATC	6 cut(s)	133, 154, 186, 265, 424, 625
MboII	GAAGA	2 cut(s)	260, 362
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	510
MluCI	AATT	3 cut(s)	412, 494, 720
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	132
MseI	TTAA	3 cut(s)	279, 498, 819
MspR9I	CCNGG	3 cut(s)	490, 798, 831
MvaI	CCWGG	3 cut(s)	490, 798, 831
MvnI	CGCG	1 cut(s)	319
MwoI	GCNNNNNNNGC	5 cut(s)	50, 77, 407, 566, 767
NdeII	GATC	6 cut(s)	133, 154, 186, 265, 424, 625
NlaIII	CATG	1 cut(s)	814
NspI	RCATGY	1 cut(s)	814
PaeI	GCATGC	1 cut(s)	814
PaeR7I	CTCGAG	1 cut(s)	553
PcsI	WCGNNNNNNNCGW	3 cut(s)	32, 41, 323
PfeI	GAWTC	1 cut(s)	138
Pfl23II	CGTACG	2 cut(s)	224, 537
PflMI	CCANNNNNTGG	2 cut(s)	343, 380
PkrI	GCNGC	6 cut(s)	52, 73, 207, 643, 676, 760
Ple19I	CGATCG	1 cut(s)	136
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PsiI	TTATAA	1 cut(s)	650
Psp124BI	GAGCTC	1 cut(s)	510
Psp6I	CCWGG	3 cut(s)	488, 796, 829
PspGI	CCWGG	3 cut(s)	488, 796, 829
PspLI	CGTACG	2 cut(s)	224, 537
PsrI	GAACNNNNNNTAC	2 cut(s)	773, 805
PsuI	RGATCY	1 cut(s)	265
PvuI	CGATCG	1 cut(s)	136
RsaI	GTAC	4 cut(s)	226, 259, 329, 539
RsaNI	GTAC	4 cut(s)	225, 258, 328, 538
SacI	GAGCTC	1 cut(s)	510
SaqAI	TTAA	3 cut(s)	279, 498, 819
SatI	GCNGC	6 cut(s)	51, 72, 206, 642, 675, 759
Sau3AI	GATC	6 cut(s)	133, 154, 186, 265, 424, 625
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	3 cut(s)	490, 798, 831
SduI	GDGCHC	1 cut(s)	510
SexAI	ACCWGGT	1 cut(s)	796
SfaNI	GCATC	2 cut(s)	460, 682
Sfr274I	CTCGAG	1 cut(s)	553
SlaI	CTCGAG	1 cut(s)	553
SmlI	CTYRAG	2 cut(s)	447, 553
SmoI	CTYRAG	2 cut(s)	447, 553
SphI	GCATGC	1 cut(s)	814
Sse9I	AATT	3 cut(s)	412, 494, 720
SsiI	CCGC	5 cut(s)	50, 71, 206, 644, 758
SspMI	CTAG	1 cut(s)	771
SstI	GAGCTC	1 cut(s)	510
StyD4I	CCNGG	3 cut(s)	488, 796, 829
TaaI	ACNGT	3 cut(s)	103, 163, 542
TaiI	ACGT	1 cut(s)	786
TaqI	TCGA	5 cut(s)	132, 136, 377, 510, 554
TasI	AATT	3 cut(s)	412, 494, 720
TauI	GCSGC	4 cut(s)	53, 74, 208, 761
TfiI	GAWTC	1 cut(s)	138
Tru1I	TTAA	3 cut(s)	279, 498, 819
Tru9I	TTAA	3 cut(s)	279, 498, 819
TscAI	CASTG	3 cut(s)	106, 442, 567
TseI	GCWGC	2 cut(s)	641, 674
TspDTI	ATGAA	1 cut(s)	632
TspRI	CASTG	3 cut(s)	106, 442, 567
Van91I	CCANNNNNTGG	2 cut(s)	343, 380
XapI	RAATTY	1 cut(s)	494
XceI	RCATGY	1 cut(s)	814
XhoI	CTCGAG	1 cut(s)	553
XspI	CTAG	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.