FvH4_6g52780

Prohibitin-3

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
38788128 .. 38791486
3359 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52780.t1

Sequence Viewer

Length: 834 bp
ATGAGCAACCAGGCCGCCGTGTCCTTCCTCACCAACCTCGCACGCGCCGCCTTCGGCATCGGCGCCGGCGCCACCATCGTCAACTCCGCCCTCTACACCGTCGACGGCGGCCAGCGCGCCGTCCTCTTCGACCGTTTCCGCGGCGTCATCGACGAAACCGTCGGCGAAGGGACCCACTTCCTCGTCCCGTGGCTCCAGAAGCCCTACATCTTCGACATCAGGACCAGGCCCCACACCTTCTCCTCCGTCTCCGGCACCAAGGACCTCCAGATGGTCAACCTCACCCTCAGGGTTCTCTCCCGCCCCGAGGTCAACCGTCTCCCTCAGATCTTCAAAACCCTAGGGCTCGAGTACGACGAGAAGGTCCTCCCTTCCATCGGCAACGAGGTTCTCAAGGCCGTCGTGGCGCAGTTCAACGCCGATCAGCTCCTGACGGAGCGCCCGCACGTCTCGGCGCTGGTGAGGGAGAGCCTGATCCGTAGGGCTAGGGATTTCAACATTGTGCTGGATGACGTGGCGATCACGCACCTTTCGTACGGGGCGGAGTTCTCGCGCGCCGTGGAGCAGAAGCAGGTGGCGCAGCAGGAGGCGGAGAGGTCTAAGTTTGTGGTGGCGAAGGCGGAGCAGGAGAGGAGGGCTGCGATTATCAGGGCGCAGGGAGAGAGTGAGGCTGCTAAGCTGATTTCGGAGGCGACTGCCACTGCAGGTAATGACCTGATTGAGCTGAGGAGGATTGAGGCCAGCAGAGAGATTGCCGGAACACTCGCCAAGTCGCCCAATGTCAACTACCTGCCTAAGGGGAACAATGTGCTCTTTGGCCTCGGTGGTCGTTGA

Protein Analysis

278

Amino Acids

30.43

Weight (kDa)

9.15

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 33 - 210 4.5e-29 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011982)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 562
AasI GACNNNNNNGTC 2 cut(s) 158, 362
Acc36I ACCTGC 3 cut(s) 562, 695, 798
AccB1I GGYRCC 3 cut(s) 62, 68, 254
AccI GTMKAC 1 cut(s) 102
AccII CGCG 5 cut(s) 45, 117, 141, 553, 555
AclWI GGATC 1 cut(s) 469
AcoI YGGCCR 1 cut(s) 109
AcyI GRCGYC 3 cut(s) 63, 69, 144
AfaI GTAC 2 cut(s) 353, 536
AfiI CCNNNNNNNGG 4 cut(s) 271, 307, 377, 796
AgsI TTSAA 3 cut(s) 334, 415, 496
AjiI CACGTC 2 cut(s) 448, 514
AjnI CCWGG 2 cut(s) 9, 224
AluBI AGCT 3 cut(s) 427, 679, 724
AluI AGCT 3 cut(s) 427, 679, 724
Alw21I GWGCWC 1 cut(s) 813
Alw26I GTCTC 3 cut(s) 253, 323, 454
AlwI GGATC 1 cut(s) 469
AlwNI CAGNNNCTG 1 cut(s) 430
Ama87I CYCGRG 2 cut(s) 305, 347
AoxI GGCC 6 cut(s) 12, 109, 227, 396, 738, 817
ApeKI GCWGC 3 cut(s) 580, 638, 671
AspA2I CCTAGG 1 cut(s) 340
AspS9I GGNCC 5 cut(s) 171, 222, 228, 262, 364
AsuHPI GGTGA 3 cut(s) 22, 274, 472
AvaI CYCGRG 2 cut(s) 305, 347
AvaII GGWCC 4 cut(s) 171, 222, 262, 364
AvrII CCTAGG 1 cut(s) 340
AxyI CCTNAGG 2 cut(s) 287, 795
BanI GGYRCC 3 cut(s) 62, 68, 254
BanII GRGCYC 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 813
BbvCI CCTCAGC 1 cut(s) 725
BbvI GCAGC 3 cut(s) 592, 625, 658
BccI CCATC 3 cut(s) 83, 265, 383
BceAI ACGGC 5 cut(s) 2, 104, 121, 383, 542
BciT130I CCWGG 2 cut(s) 11, 226
BcoDI GTCTC 3 cut(s) 253, 323, 454
BfaI CTAG 2 cut(s) 341, 486
BfmI CTRYAG 1 cut(s) 702
BfoI RGCGCY 4 cut(s) 66, 72, 442, 458
BfuAI ACCTGC 3 cut(s) 562, 695, 798
BglI GCCNNNNNGGC 1 cut(s) 404
BglII AGATCT 1 cut(s) 327
BisI GCNGC 7 cut(s) 15, 48, 109, 142, 581, 639, 672
BlnI CCTAGG 1 cut(s) 340
BlpI GCTNAGC 1 cut(s) 675
BlsI GCNGC 7 cut(s) 16, 49, 110, 143, 582, 640, 673
Bme1390I CCNGG 2 cut(s) 11, 226
Bme18I GGWCC 4 cut(s) 171, 222, 262, 364
BmeT110I CYCGRG 2 cut(s) 305, 347
BmgBI CACGTC 2 cut(s) 448, 514
BmgT120I GGNCC 5 cut(s) 171, 222, 228, 262, 364
BmiI GGNNCC 7 cut(s) 64, 70, 172, 173, 194, 230, 256
BmrFI CCNGG 2 cut(s) 11, 226
BmsI GCATC 1 cut(s) 66
BpmI CTGGAG 2 cut(s) 179, 251
Bpu10I CCTNAGC 1 cut(s) 725
Bpu1102I GCTNAGC 1 cut(s) 675
BpuEI CTTGAG 1 cut(s) 377
BsaHI GRCGYC 3 cut(s) 63, 69, 144
BsaJI CCNNGG 7 cut(s) 139, 188, 258, 306, 340, 558, 820
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 4 cut(s) 271, 307, 377, 796
Bse118I RCCGGY 1 cut(s) 65
Bse21I CCTNAGG 2 cut(s) 287, 795
BseBI CCWGG 2 cut(s) 11, 226
BseDI CCNNGG 7 cut(s) 139, 188, 258, 306, 340, 558, 820
BseGI GGATG 1 cut(s) 514
BseLI CCNNNNNNNGG 4 cut(s) 271, 307, 377, 796
BseMII CTCAG 3 cut(s) 301, 338, 716
BsePI GCGCGC 2 cut(s) 115, 553
BseRI GAGGAG 3 cut(s) 232, 646, 742
BseXI GCAGC 3 cut(s) 592, 625, 658
Bsh1236I CGCG 5 cut(s) 45, 117, 141, 553, 555
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 6 cut(s) 14, 111, 229, 398, 740, 819
BshNI GGYRCC 3 cut(s) 62, 68, 254
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 813
BsiHKCI CYCGRG 2 cut(s) 305, 347
BsiSI CCGG 3 cut(s) 66, 252, 756
BsiWI CGTACG 1 cut(s) 534
BslFI GGGAC 2 cut(s) 170, 184
BslI CCNNNNNNNGG 4 cut(s) 271, 307, 377, 796
BsmAI GTCTC 3 cut(s) 253, 323, 454
BsmBI CGTCTC 3 cut(s) 253, 323, 454
BsmFI GGGAC 2 cut(s) 170, 184
BsnI GGCC 6 cut(s) 14, 111, 229, 398, 740, 819
BsoBI CYCGRG 2 cut(s) 305, 347
Bsp1286I GDGCHC 2 cut(s) 348, 813
Bsp143I GATC 4 cut(s) 327, 421, 474, 519
Bsp1720I GCTNAGC 1 cut(s) 675
BspANI GGCC 6 cut(s) 14, 111, 229, 398, 740, 819
BspCNI CTCAG 3 cut(s) 300, 337, 717
BspFNI CGCG 5 cut(s) 45, 117, 141, 553, 555
BspLI GGNNCC 7 cut(s) 64, 70, 172, 173, 194, 230, 256
BspMAI CTGCAG 1 cut(s) 706
BspMI ACCTGC 3 cut(s) 562, 695, 798
BspPI GGATC 1 cut(s) 469
BspT107I GGYRCC 3 cut(s) 62, 68, 254
BsrFI RCCGGY 1 cut(s) 65
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 7 cut(s) 139, 188, 258, 306, 340, 558, 820
BssHII GCGCGC 2 cut(s) 115, 553
BssMI GATC 4 cut(s) 327, 421, 474, 519
BssNI GRCGYC 3 cut(s) 63, 69, 144
BssT1I CCWWGG 2 cut(s) 258, 340
Bst2UI CCWGG 2 cut(s) 11, 226
Bst4CI ACNGT 4 cut(s) 100, 134, 160, 317
Bst6I CTCTTC 1 cut(s) 131
BstACI GRCGYC 3 cut(s) 63, 69, 144
BstC8I GCNNGC 7 cut(s) 43, 67, 113, 117, 443, 555, 742
BstDEI CTNAG 6 cut(s) 287, 324, 600, 675, 725, 795
BstDSI CCRYGG 3 cut(s) 139, 188, 558
BstENI CCTNNNNNAGG 1 cut(s) 794
BstF5I GGATG 1 cut(s) 514
BstFNI CGCG 5 cut(s) 45, 117, 141, 553, 555
BstH2I RGCGCY 4 cut(s) 66, 72, 442, 458
BstKTI GATC 4 cut(s) 330, 424, 477, 522
BstMAI GTCTC 3 cut(s) 253, 323, 454
BstMBI GATC 4 cut(s) 327, 421, 474, 519
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 5 cut(s) 47, 114, 199, 404, 577
BstNI CCWGG 2 cut(s) 11, 226
BstSCI CCNGG 2 cut(s) 9, 224
BstSFI CTRYAG 1 cut(s) 702
BstUI CGCG 5 cut(s) 45, 117, 141, 553, 555
BstV1I GCAGC 3 cut(s) 592, 625, 658
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
Bsu36I CCTNAGG 2 cut(s) 287, 795
BsuRI GGCC 6 cut(s) 14, 111, 229, 398, 740, 819
BtgI CCRYGG 3 cut(s) 139, 188, 558
BtrI CACGTC 2 cut(s) 448, 514
BtsCI GGATG 1 cut(s) 514
BtsI GCAGTG 1 cut(s) 699
BtsIMutI CAGTG 1 cut(s) 699
BveI ACCTGC 3 cut(s) 562, 695, 798
Cac8I GCNNGC 7 cut(s) 43, 67, 113, 117, 443, 555, 742
CaiI CAGNNNCTG 1 cut(s) 430
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 5 cut(s) 171, 222, 228, 262, 364
Cfr42I CCGCGG 1 cut(s) 142
CseI GACGC 1 cut(s) 133
Csp6I GTAC 2 cut(s) 352, 535
CviQI GTAC 2 cut(s) 352, 535
DdeI CTNAG 6 cut(s) 287, 324, 600, 675, 725, 795
DinI GGCGCC 2 cut(s) 64, 70
DpnI GATC 4 cut(s) 329, 423, 476, 521
DpnII GATC 4 cut(s) 327, 421, 474, 519
DrdI GACNNNNNNGTC 2 cut(s) 158, 362
DseDI GACNNNNNNGTC 2 cut(s) 158, 362
EaeI YGGCCR 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
EciI GGCGGA 4 cut(s) 76, 557, 605, 635
Eco130I CCWWGG 2 cut(s) 258, 340
Eco24I GRGCYC 1 cut(s) 348
Eco47I GGWCC 4 cut(s) 171, 222, 262, 364
Eco81I CCTNAGG 2 cut(s) 287, 795
Eco88I CYCGRG 2 cut(s) 305, 347
EcoNI CCTNNNNNAGG 1 cut(s) 794
EcoO109I RGGNCCY 4 cut(s) 171, 228, 262, 364
EcoRII CCWGG 2 cut(s) 9, 224
EcoT14I CCWWGG 2 cut(s) 258, 340
EcoT38I GRGCYC 1 cut(s) 348
EgeI GGCGCC 2 cut(s) 64, 70
EheI GGCGCC 2 cut(s) 64, 70
ErhI CCWWGG 2 cut(s) 258, 340
Esp3I CGTCTC 3 cut(s) 253, 323, 454
FaqI GGGAC 2 cut(s) 170, 184
FauI CCCGC 2 cut(s) 308, 450
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 7 cut(s) 15, 48, 109, 142, 581, 639, 672
FokI GGATG 1 cut(s) 521
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 7 cut(s) 15, 48, 109, 142, 581, 639, 672
FspBI CTAG 2 cut(s) 341, 486
GluI GCNGC 7 cut(s) 15, 48, 109, 142, 581, 639, 672
GsuI CTGGAG 2 cut(s) 179, 251
HaeII RGCGCY 4 cut(s) 66, 72, 442, 458
HaeIII GGCC 6 cut(s) 14, 111, 229, 398, 740, 819
HapII CCGG 3 cut(s) 66, 252, 756
HgaI GACGC 1 cut(s) 133
Hin1I GRCGYC 3 cut(s) 63, 69, 144
HincII GTYRAC 5 cut(s) 82, 103, 277, 313, 784
HindII GTYRAC 5 cut(s) 82, 103, 277, 313, 784
HpaII CCGG 3 cut(s) 66, 252, 756
HphI GGTGA 3 cut(s) 22, 274, 472
Hpy166II GTNNAC 5 cut(s) 82, 103, 277, 313, 784
Hpy188I TCNGA 2 cut(s) 327, 688
Hpy188III TCNNGA 4 cut(s) 196, 220, 268, 430
Hpy8I GTNNAC 5 cut(s) 82, 103, 277, 313, 784
Hpy99I CGWCG 6 cut(s) 104, 107, 155, 164, 359, 404
HpyAV CCTTC 7 cut(s) 34, 61, 161, 247, 355, 381, 610
HpyCH4III ACNGT 4 cut(s) 100, 134, 160, 317
HpyCH4IV ACGT 2 cut(s) 447, 513
HpyCH4V TGCA 1 cut(s) 704
HpyF10VI GCNNNNNNNGC 5 cut(s) 47, 114, 199, 404, 577
HpyF3I CTNAG 6 cut(s) 287, 324, 600, 675, 725, 795
HpySE526I ACGT 2 cut(s) 447, 513
Hsp92I GRCGYC 3 cut(s) 63, 69, 144
KasI GGCGCC 2 cut(s) 62, 68
KflI GGGWCCC 1 cut(s) 171
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
KspI CCGCGG 1 cut(s) 142
Kzo9I GATC 4 cut(s) 327, 421, 474, 519
LmnI GCTCC 5 cut(s) 198, 432, 436, 562, 622
Lsp1109I GCAGC 3 cut(s) 592, 625, 658
LweI GCATC 1 cut(s) 66
MaeI CTAG 2 cut(s) 341, 486
MaeII ACGT 2 cut(s) 447, 513
MalI GATC 4 cut(s) 329, 423, 476, 521
MboI GATC 4 cut(s) 327, 421, 474, 519
MboII GAAGA 3 cut(s) 118, 202, 322
MflI RGATCY 1 cut(s) 327
MhlI GDGCHC 2 cut(s) 348, 813
Mly113I GGCGCC 2 cut(s) 63, 69
MreI CGCCGGCG 1 cut(s) 65
MroNI GCCGGC 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 141
MspI CCGG 3 cut(s) 66, 252, 756
MspR9I CCNGG 2 cut(s) 11, 226
MvaI CCWGG 2 cut(s) 11, 226
MvnI CGCG 5 cut(s) 45, 117, 141, 553, 555
MwoI GCNNNNNNNGC 5 cut(s) 47, 114, 199, 404, 577
NaeI GCCGGC 1 cut(s) 67
NarI GGCGCC 2 cut(s) 63, 69
NdeII GATC 4 cut(s) 327, 421, 474, 519
NgoMIV GCCGGC 1 cut(s) 65
NlaIV GGNNCC 7 cut(s) 64, 70, 172, 173, 194, 230, 256
NmeAIII GCCGAG 1 cut(s) 431
PaeR7I CTCGAG 1 cut(s) 347
PaqCI CACCTGC 1 cut(s) 562
PauI GCGCGC 2 cut(s) 115, 553
PcsI WCGNNNNNNNCGW 3 cut(s) 156, 354, 530
PdiI GCCGGC 1 cut(s) 67
Pfl23II CGTACG 1 cut(s) 534
PkrI GCNGC 7 cut(s) 16, 49, 110, 143, 582, 640, 673
PluTI GGCGCC 2 cut(s) 66, 72
PpuMI RGGWCCY 3 cut(s) 171, 262, 364
Psp5II RGGWCCY 3 cut(s) 171, 262, 364
Psp6I CCWGG 2 cut(s) 9, 224
PspGI CCWGG 2 cut(s) 9, 224
PspLI CGTACG 1 cut(s) 534
PspN4I GGNNCC 7 cut(s) 64, 70, 172, 173, 194, 230, 256
PspPI GGNCC 5 cut(s) 171, 222, 228, 262, 364
PspPPI RGGWCCY 3 cut(s) 171, 262, 364
PspXI VCTCGAGB 1 cut(s) 347
PstI CTGCAG 1 cut(s) 706
PstNI CAGNNNCTG 1 cut(s) 430
PsuI RGATCY 1 cut(s) 327
PteI GCGCGC 2 cut(s) 115, 553
RsaI GTAC 2 cut(s) 353, 536
RsaNI GTAC 2 cut(s) 352, 535
SacII CCGCGG 1 cut(s) 142
SalI GTCGAC 1 cut(s) 101
SatI GCNGC 7 cut(s) 15, 48, 109, 142, 581, 639, 672
Sau3AI GATC 4 cut(s) 327, 421, 474, 519
Sau96I GGNCC 5 cut(s) 171, 222, 228, 262, 364
ScrFI CCNGG 2 cut(s) 11, 226
SduI GDGCHC 2 cut(s) 348, 813
SfaNI GCATC 1 cut(s) 66
SfcI CTRYAG 1 cut(s) 702
SfoI GGCGCC 2 cut(s) 64, 70
Sfr274I CTCGAG 1 cut(s) 347
Sfr303I CCGCGG 1 cut(s) 142
SgrAI CRCCGGYG 1 cut(s) 65
SgrBI CCGCGG 1 cut(s) 142
SgrDI CGTCGACG 1 cut(s) 101
SinI GGWCC 4 cut(s) 171, 222, 262, 364
SlaI CTCGAG 1 cut(s) 347
SmlI CTYRAG 2 cut(s) 347, 392
SmoI CTYRAG 2 cut(s) 347, 392
SspDI GGCGCC 2 cut(s) 62, 68
SspMI CTAG 2 cut(s) 341, 486
StyD4I CCNGG 2 cut(s) 9, 224
StyI CCWWGG 2 cut(s) 258, 340
TaaI ACNGT 4 cut(s) 100, 134, 160, 317
TaiI ACGT 2 cut(s) 450, 516
TaqI TCGA 5 cut(s) 102, 129, 150, 213, 348
TauI GCSGC 4 cut(s) 17, 50, 111, 144
TscAI CASTG 1 cut(s) 706
TseI GCWGC 3 cut(s) 580, 638, 671
TspGWI ACGGA 3 cut(s) 235, 449, 467
TspRI CASTG 1 cut(s) 706
VpaK11BI GGWCC 4 cut(s) 171, 222, 262, 364
XagI CCTNNNNNAGG 1 cut(s) 794
XhoI CTCGAG 1 cut(s) 347
XmaJI CCTAGG 1 cut(s) 340
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 2 cut(s) 341, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.