Rroxscaffold_2G00078240

Prohibitin-3

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
1608483 .. 1610861
2379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00078240.1

Sequence Viewer

Length: 840 bp
ATGGGAAGCAACCAAGCCGCCGTGTCCTTCCTCACCAACCTCGCACGCGCCGCCTTCGGCCTCGGCGCCGGCGCCACCATCGTCAACTCCGCCCTCTACACCGTCGACGGAGGCCAGCGCGCCGTCCTCTTCGACCGTTTCCGCGGCGTCATCGACGAGACCGTCGGCGAAGGCACCCACTTTCTGGTCCCGTGGCTGCAGAAGCCCTACATCTTCGACATCAGGACCCGCCCCCACACCTTCTCCTCCATCTCCGGCACCAAGGATCTTCAGATGGTCAACCTCACTCTTAGGGTGCTCTCCCGCCCCGAGGTCAGTCGCCTCCCTCAGATCTTCAAAACCCTGGGGCTCGAGTACGACGAGAAGGTCCTCCCGTCGATCGGGAATGAGGTTCTCAAGGCGGTGGTGGCGCAGTTCAACGCCGATCAGCTCCTGACGGAGCGGCCCCACGTGTCGGCGCTGGTGCGGGAGAGCTTGATCCGCAGGGCTAAGGATTTCAACATTGAGCTGGACGACGTGGCCATCACGCACTTGTCGTACGGGGCGGAGTTCTCACGCGCCGTCGAGCAGAAGCAGGTGGCGCAGCAGGAGGCTGAGCGGTCCAAGTTTGTTGTGGCGAAGGCGGAGCAGGAGAGGAGGGCTGCTATTATCAGGGCTCAGGGTGAGAGTGAATCTGCTAAGCTGATTTCTGAGGCGACTGCCGCTGCCGGAAGTGACTTGATTGAGCTCAGGAGGATCGAGGCCAGTAGAGAGATTGCCGCCACGCTCGCCAAGTCGCCCAATGTCAACTACCTGCCAAAGGGGAACCAGGTCCTCTTCGGCCTCGGTGGTGGTCGTTGA

Protein Analysis

279

Amino Acids

30.52

Weight (kDa)

8.8

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 34 - 211 3.5e-29 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011982)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 565
AasI GACNNNNNNGTC 2 cut(s) 161, 365
Acc36I ACCTGC 2 cut(s) 565, 801
AccB1I GGYRCC 4 cut(s) 65, 71, 173, 257
AccB7I CCANNNNNTGG 1 cut(s) 184
AccBSI CCGCTC 2 cut(s) 442, 598
AccI GTMKAC 1 cut(s) 105
AccII CGCG 4 cut(s) 48, 120, 144, 558
AclWI GGATC 3 cut(s) 273, 472, 743
AcoI YGGCCR 1 cut(s) 519
AcuI CTGAAG 1 cut(s) 254
AcvI CACGTG 1 cut(s) 451
AcyI GRCGYC 3 cut(s) 66, 72, 147
AfaI GTAC 2 cut(s) 356, 539
AfiI CCNNNNNNNGG 5 cut(s) 184, 310, 380, 454, 799
AflIII ACRYGT 1 cut(s) 450
AgsI TTSAA 3 cut(s) 337, 418, 499
AjiI CACGTC 1 cut(s) 517
AjnI CCWGG 2 cut(s) 342, 807
AluBI AGCT 5 cut(s) 430, 474, 508, 682, 727
AluI AGCT 5 cut(s) 430, 474, 508, 682, 727
Alw21I GWGCWC 2 cut(s) 300, 729
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 3 cut(s) 273, 472, 743
AlwNI CAGNNNCTG 1 cut(s) 433
Ama87I CYCGRG 2 cut(s) 308, 350
AoxI GGCC 6 cut(s) 58, 112, 443, 519, 741, 820
ApeKI GCWGC 4 cut(s) 196, 583, 641, 704
AspLEI GCGC 9 cut(s) 50, 68, 74, 120, 122, 412, 460, 560, 583
AspS9I GGNCC 6 cut(s) 187, 225, 367, 444, 600, 811
AsuHPI GGTGA 2 cut(s) 25, 674
AvaI CYCGRG 2 cut(s) 308, 350
AvaII GGWCC 5 cut(s) 187, 225, 367, 600, 811
BalI TGGCCA 1 cut(s) 521
BanI GGYRCC 4 cut(s) 65, 71, 173, 257
BanII GRGCYC 3 cut(s) 351, 658, 729
BbrPI CACGTG 1 cut(s) 451
Bbv12I GWGCWC 2 cut(s) 300, 729
BbvI GCAGC 4 cut(s) 183, 595, 628, 691
BccI CCATC 4 cut(s) 86, 257, 268, 530
BceAI ACGGC 3 cut(s) 5, 107, 545
BciT130I CCWGG 2 cut(s) 344, 809
BcoDI GTCTC 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 197
BfoI RGCGCY 3 cut(s) 69, 75, 461
BfuAI ACCTGC 2 cut(s) 565, 801
BglII AGATCT 1 cut(s) 330
BlpI GCTNAGC 2 cut(s) 594, 678
Bme1390I CCNGG 2 cut(s) 344, 809
Bme18I GGWCC 5 cut(s) 187, 225, 367, 600, 811
BmeT110I CYCGRG 2 cut(s) 308, 350
BmgBI CACGTC 1 cut(s) 517
BmgT120I GGNCC 6 cut(s) 187, 225, 367, 444, 600, 811
BmiI GGNNCC 8 cut(s) 67, 73, 175, 189, 227, 259, 446, 806
BmrFI CCNGG 2 cut(s) 344, 809
Bpu10I CCTNAGC 3 cut(s) 489, 657, 728
Bpu1102I GCTNAGC 2 cut(s) 594, 678
BpuEI CTTGAG 1 cut(s) 380
BsaAI YACGTR 1 cut(s) 451
BsaHI GRCGYC 3 cut(s) 66, 72, 147
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 8 cut(s) 61, 142, 191, 261, 309, 342, 343, 823
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 5 cut(s) 184, 310, 380, 454, 799
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 744
BseBI CCWGG 2 cut(s) 344, 809
BseDI CCNNGG 8 cut(s) 61, 142, 191, 261, 309, 342, 343, 823
BseLI CCNNNNNNNGG 5 cut(s) 184, 310, 380, 454, 799
BseMII CTCAG 5 cut(s) 341, 585, 671, 681, 742
BseNI ACTGG 1 cut(s) 744
BsePI GCGCGC 1 cut(s) 118
BseRI GAGGAG 2 cut(s) 235, 649
BseXI GCAGC 4 cut(s) 183, 595, 628, 691
Bsh1236I CGCG 4 cut(s) 48, 120, 144, 558
Bsh1285I CGRYCG 2 cut(s) 136, 381
BshFI GGCC 6 cut(s) 60, 114, 445, 521, 743, 822
BshNI GGYRCC 4 cut(s) 65, 71, 173, 257
BsiEI CGRYCG 2 cut(s) 136, 381
BsiHKAI GWGCWC 2 cut(s) 300, 729
BsiHKCI CYCGRG 2 cut(s) 308, 350
BsiSI CCGG 3 cut(s) 69, 255, 708
BsiWI CGTACG 1 cut(s) 537
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 5 cut(s) 184, 310, 380, 454, 799
BsmAI GTCTC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 6 cut(s) 60, 114, 445, 521, 743, 822
Bso31I GGTCTC 1 cut(s) 152
BsoBI CYCGRG 2 cut(s) 308, 350
Bsp1286I GDGCHC 4 cut(s) 300, 351, 658, 729
Bsp143I GATC 6 cut(s) 265, 330, 378, 424, 477, 735
Bsp1720I GCTNAGC 2 cut(s) 594, 678
BspANI GGCC 6 cut(s) 60, 114, 445, 521, 743, 822
BspCNI CTCAG 5 cut(s) 340, 586, 670, 682, 741
BspFNI CGCG 4 cut(s) 48, 120, 144, 558
BspLI GGNNCC 8 cut(s) 67, 73, 175, 189, 227, 259, 446, 806
BspMAI CTGCAG 1 cut(s) 201
BspMI ACCTGC 2 cut(s) 565, 801
BspPI GGATC 3 cut(s) 273, 472, 743
BspT107I GGYRCC 4 cut(s) 65, 71, 173, 257
BspTNI GGTCTC 1 cut(s) 152
BsrBI CCGCTC 2 cut(s) 442, 598
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 1 cut(s) 744
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 8 cut(s) 61, 142, 191, 261, 309, 342, 343, 823
BssHII GCGCGC 1 cut(s) 118
BssMI GATC 6 cut(s) 265, 330, 378, 424, 477, 735
BssNI GRCGYC 3 cut(s) 66, 72, 147
BssT1I CCWWGG 1 cut(s) 261
Bst2UI CCWGG 2 cut(s) 344, 809
Bst4CI ACNGT 3 cut(s) 103, 137, 163
Bst6I CTCTTC 2 cut(s) 134, 821
BstACI GRCGYC 3 cut(s) 66, 72, 147
BstBAI YACGTR 1 cut(s) 451
BstC8I GCNNGC 5 cut(s) 46, 70, 116, 120, 768
BstDEI CTNAG 8 cut(s) 290, 327, 489, 594, 657, 678, 690, 728
BstDSI CCRYGG 2 cut(s) 142, 191
BstENI CCTNNNNNAGG 1 cut(s) 797
BstFNI CGCG 4 cut(s) 48, 120, 144, 558
BstH2I RGCGCY 3 cut(s) 69, 75, 461
BstHHI GCGC 9 cut(s) 50, 68, 74, 120, 122, 412, 460, 560, 583
BstKTI GATC 6 cut(s) 268, 333, 381, 427, 480, 738
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 6 cut(s) 265, 330, 378, 424, 477, 735
BstMCI CGRYCG 2 cut(s) 136, 381
BstMWI GCNNNNNNNGC 7 cut(s) 50, 202, 407, 480, 580, 701, 767
BstNI CCWGG 2 cut(s) 344, 809
BstSCI CCNGG 2 cut(s) 342, 807
BstSFI CTRYAG 1 cut(s) 197
BstUI CGCG 4 cut(s) 48, 120, 144, 558
BstV1I GCAGC 4 cut(s) 183, 595, 628, 691
BstX2I RGATCY 2 cut(s) 265, 330
BstYI RGATCY 2 cut(s) 265, 330
BsuRI GGCC 6 cut(s) 60, 114, 445, 521, 743, 822
BtgI CCRYGG 2 cut(s) 142, 191
BtrI CACGTC 1 cut(s) 517
BveI ACCTGC 2 cut(s) 565, 801
Cac8I GCNNGC 5 cut(s) 46, 70, 116, 120, 768
CaiI CAGNNNCTG 1 cut(s) 433
CfoI GCGC 9 cut(s) 50, 68, 74, 120, 122, 412, 460, 560, 583
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 6 cut(s) 187, 225, 367, 444, 600, 811
Cfr42I CCGCGG 1 cut(s) 145
CseI GACGC 1 cut(s) 136
CsiI ACCWGGT 1 cut(s) 807
Csp6I GTAC 2 cut(s) 355, 538
CviQI GTAC 2 cut(s) 355, 538
DdeI CTNAG 8 cut(s) 290, 327, 489, 594, 657, 678, 690, 728
DinI GGCGCC 2 cut(s) 67, 73
DpnI GATC 6 cut(s) 267, 332, 380, 426, 479, 737
DpnII GATC 6 cut(s) 265, 330, 378, 424, 477, 735
DrdI GACNNNNNNGTC 2 cut(s) 161, 365
DseDI GACNNNNNNGTC 2 cut(s) 161, 365
EaeI YGGCCR 1 cut(s) 519
Eam1104I CTCTTC 2 cut(s) 134, 821
EarI CTCTTC 2 cut(s) 134, 821
EciI GGCGGA 3 cut(s) 79, 560, 638
Ecl136II GAGCTC 1 cut(s) 727
Eco130I CCWWGG 1 cut(s) 261
Eco24I GRGCYC 3 cut(s) 351, 658, 729
Eco31I GGTCTC 1 cut(s) 152
Eco47I GGWCC 5 cut(s) 187, 225, 367, 600, 811
Eco53kI GAGCTC 1 cut(s) 727
Eco57I CTGAAG 1 cut(s) 254
Eco72I CACGTG 1 cut(s) 451
Eco88I CYCGRG 2 cut(s) 308, 350
EcoICRI GAGCTC 1 cut(s) 727
EcoNI CCTNNNNNAGG 1 cut(s) 797
EcoO109I RGGNCCY 3 cut(s) 225, 367, 811
EcoRII CCWGG 2 cut(s) 342, 807
EcoT14I CCWWGG 1 cut(s) 261
EcoT38I GRGCYC 3 cut(s) 351, 658, 729
EgeI GGCGCC 2 cut(s) 67, 73
EheI GGCGCC 2 cut(s) 67, 73
ErhI CCWWGG 1 cut(s) 261
FaqI GGGAC 1 cut(s) 173
FauI CCCGC 3 cut(s) 236, 311, 459
FblI GTMKAC 1 cut(s) 105
FriOI GRGCYC 3 cut(s) 351, 658, 729
GlaI GCGC 9 cut(s) 49, 67, 73, 119, 121, 411, 459, 559, 582
HaeII RGCGCY 3 cut(s) 69, 75, 461
HaeIII GGCC 6 cut(s) 60, 114, 445, 521, 743, 822
HapII CCGG 3 cut(s) 69, 255, 708
HgaI GACGC 1 cut(s) 136
HhaI GCGC 9 cut(s) 50, 68, 74, 120, 122, 412, 460, 560, 583
Hin1I GRCGYC 3 cut(s) 66, 72, 147
Hin6I GCGC 9 cut(s) 48, 66, 72, 118, 120, 410, 458, 558, 581
HinP1I GCGC 9 cut(s) 48, 66, 72, 118, 120, 410, 458, 558, 581
HincII GTYRAC 4 cut(s) 85, 106, 280, 787
HindII GTYRAC 4 cut(s) 85, 106, 280, 787
HinfI GANTC 1 cut(s) 671
HpaII CCGG 3 cut(s) 69, 255, 708
HphI GGTGA 2 cut(s) 25, 674
Hpy166II GTNNAC 4 cut(s) 85, 106, 280, 787
Hpy188I TCNGA 3 cut(s) 273, 330, 691
Hpy188III TCNNGA 4 cut(s) 223, 382, 433, 730
Hpy8I GTNNAC 4 cut(s) 85, 106, 280, 787
Hpy99I CGWCG 8 cut(s) 107, 110, 158, 167, 362, 379, 518, 566
HpyAV CCTTC 6 cut(s) 37, 64, 164, 250, 358, 613
HpyCH4III ACNGT 3 cut(s) 103, 137, 163
HpyCH4IV ACGT 2 cut(s) 450, 516
HpyCH4V TGCA 1 cut(s) 199
HpyF10VI GCNNNNNNNGC 7 cut(s) 50, 202, 407, 480, 580, 701, 767
HpyF3I CTNAG 8 cut(s) 290, 327, 489, 594, 657, 678, 690, 728
HpySE526I ACGT 2 cut(s) 450, 516
Hsp92I GRCGYC 3 cut(s) 66, 72, 147
HspAI GCGC 9 cut(s) 48, 66, 72, 118, 120, 410, 458, 558, 581
KasI GGCGCC 2 cut(s) 65, 71
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
KspI CCGCGG 1 cut(s) 145
Kzo9I GATC 6 cut(s) 265, 330, 378, 424, 477, 735
LmnI GCTCC 3 cut(s) 435, 439, 625
Lsp1109I GCAGC 4 cut(s) 183, 595, 628, 691
MabI ACCWGGT 1 cut(s) 807
MaeII ACGT 2 cut(s) 450, 516
MaeIII GTNAC 1 cut(s) 713
MalI GATC 6 cut(s) 267, 332, 380, 426, 479, 737
MbiI CCGCTC 2 cut(s) 442, 598
MboI GATC 6 cut(s) 265, 330, 378, 424, 477, 735
MboII GAAGA 5 cut(s) 121, 205, 260, 325, 808
MflI RGATCY 2 cut(s) 265, 330
MhlI GDGCHC 4 cut(s) 300, 351, 658, 729
MlsI TGGCCA 1 cut(s) 521
MluNI TGGCCA 1 cut(s) 521
Mly113I GGCGCC 2 cut(s) 66, 72
Mox20I TGGCCA 1 cut(s) 521
MreI CGCCGGCG 1 cut(s) 68
MroNI GCCGGC 1 cut(s) 68
MscI TGGCCA 1 cut(s) 521
Msp20I TGGCCA 1 cut(s) 521
MspA1I CMGCKG 2 cut(s) 144, 704
MspI CCGG 3 cut(s) 69, 255, 708
MspR9I CCNGG 2 cut(s) 344, 809
MvaI CCWGG 2 cut(s) 344, 809
MvnI CGCG 4 cut(s) 48, 120, 144, 558
MwoI GCNNNNNNNGC 7 cut(s) 50, 202, 407, 480, 580, 701, 767
NaeI GCCGGC 1 cut(s) 70
NarI GGCGCC 2 cut(s) 66, 72
NdeII GATC 6 cut(s) 265, 330, 378, 424, 477, 735
NgoMIV GCCGGC 1 cut(s) 68
NlaIV GGNNCC 8 cut(s) 67, 73, 175, 189, 227, 259, 446, 806
NmeAIII GCCGAG 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 713
PaeR7I CTCGAG 1 cut(s) 350
PaqCI CACCTGC 1 cut(s) 565
PasI CCCWGGG 1 cut(s) 343
PauI GCGCGC 1 cut(s) 118
PcsI WCGNNNNNNNCGW 3 cut(s) 159, 357, 533
PdiI GCCGGC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 671
Pfl23II CGTACG 1 cut(s) 537
PflMI CCANNNNNTGG 1 cut(s) 184
Ple19I CGATCG 1 cut(s) 381
PluTI GGCGCC 2 cut(s) 69, 75
PmaCI CACGTG 1 cut(s) 451
PmlI CACGTG 1 cut(s) 451
Ppu21I YACGTR 1 cut(s) 451
PpuMI RGGWCCY 3 cut(s) 225, 367, 811
Psp124BI GAGCTC 1 cut(s) 729
Psp5II RGGWCCY 3 cut(s) 225, 367, 811
Psp6I CCWGG 2 cut(s) 342, 807
PspCI CACGTG 1 cut(s) 451
PspGI CCWGG 2 cut(s) 342, 807
PspLI CGTACG 1 cut(s) 537
PspN4I GGNNCC 8 cut(s) 67, 73, 175, 189, 227, 259, 446, 806
PspPI GGNCC 6 cut(s) 187, 225, 367, 444, 600, 811
PspPPI RGGWCCY 3 cut(s) 225, 367, 811
PspXI VCTCGAGB 1 cut(s) 350
PstI CTGCAG 1 cut(s) 201
PstNI CAGNNNCTG 1 cut(s) 433
PsuI RGATCY 2 cut(s) 265, 330
PteI GCGCGC 1 cut(s) 118
PvuI CGATCG 1 cut(s) 381
RsaI GTAC 2 cut(s) 356, 539
RsaNI GTAC 2 cut(s) 355, 538
SacI GAGCTC 1 cut(s) 729
SacII CCGCGG 1 cut(s) 145
SalI GTCGAC 1 cut(s) 104
Sau3AI GATC 6 cut(s) 265, 330, 378, 424, 477, 735
Sau96I GGNCC 6 cut(s) 187, 225, 367, 444, 600, 811
ScrFI CCNGG 2 cut(s) 344, 809
SduI GDGCHC 4 cut(s) 300, 351, 658, 729
SexAI ACCWGGT 1 cut(s) 807
SfcI CTRYAG 1 cut(s) 197
SfoI GGCGCC 2 cut(s) 67, 73
Sfr274I CTCGAG 1 cut(s) 350
Sfr303I CCGCGG 1 cut(s) 145
SgrAI CRCCGGYG 1 cut(s) 68
SgrBI CCGCGG 1 cut(s) 145
SgrDI CGTCGACG 1 cut(s) 104
SinI GGWCC 5 cut(s) 187, 225, 367, 600, 811
SlaI CTCGAG 1 cut(s) 350
SmlI CTYRAG 2 cut(s) 350, 395
SmoI CTYRAG 2 cut(s) 350, 395
SspDI GGCGCC 2 cut(s) 65, 71
SstI GAGCTC 1 cut(s) 729
StyD4I CCNGG 2 cut(s) 342, 807
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 3 cut(s) 103, 137, 163
TaiI ACGT 2 cut(s) 453, 519
TaqI TCGA 8 cut(s) 105, 132, 153, 216, 351, 377, 564, 738
TauI GCSGC 6 cut(s) 20, 53, 147, 445, 704, 761
TfiI GAWTC 1 cut(s) 671
TseFI GTSAC 1 cut(s) 713
TseI GCWGC 4 cut(s) 196, 583, 641, 704
Tsp45I GTSAC 1 cut(s) 713
TspGWI ACGGA 2 cut(s) 123, 452
Van91I CCANNNNNTGG 1 cut(s) 184
VpaK11BI GGWCC 5 cut(s) 187, 225, 367, 600, 811
XagI CCTNNNNNAGG 1 cut(s) 797
XcmI CCANNNNNNNNNTGG 1 cut(s) 610
XhoI CTCGAG 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.