MD09G1016800.v1.1

Prohibitin-3

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
1055749 .. 1058150
2402 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1016800.v1.1.491

Sequence Viewer

Length: 837 bp
ATGGGAAGCAACCAAGCTGCCGTGTCTTTCCTCACCAACGTCGCGCGCGCCGCCTTCGGCCTCGGTGTTGGCGCCACCGTCGTCAACTCCGCGCTCTACACCGTCGACGGCGGCCAGCGAGCCGTCCTCTTCGACCGTTTCCGCGGAGTCATCGACGACACTGTCGGCGAGGGGACCCACTTCCTGGTCCCATGGCTCCAGAAGCCCTACATCTTCGACATCCGCACCCGGCCCCACACCTTCTCCTCCATCTCCGGCACCAAGGATCTCCAGATGGTGAATCTCACCCTCCGGGTCCTTTCGCGCCCCGAGGTCGCTCGCCTCCCTCAGATCTTCAAAACCCTAGGGCTCGAGTACGATGAGAAGGTCCTCCCCTCCATCGGCAATGAGGTCCTCAAGGCAGTGGTGGCGCAATTCAACGCCGATCAGCTCCTCACCGAGCGTCCCCACGTGTCGGCGCTGGTGCGCGAGAGCCTGATTCGCCGCGCCAAGGATTTCAACATCGTTCTGGATGACGTGGCGATCACGCACTTGTCGTACGGGCTGGAGTTCTCGCGCGCCGTGGAGGCGAAGCAGGTGGCTCAGCAGGAGGCGGAGCGGTCCAAGTTTGTGGTGGCCAAGACTGAGCAGGAGAGGCGGGCTGCGATTATCCGGGCACAGGGTGAGAGCGAGGCTGCGAAGCTCATCTCTGATGCGACTGCTTCGGCGGGTATGGGACTGATCGAGCTCAGGAGGATCGAGGCTTCCAGGGAGGTTGCTAACACGCTTGCCAGGTCGCCCAATGTGTCTTACCTGCCTGGTGGGAAGAACATGCTCTTTGGTCTCAACCCTCGCTGA

Protein Analysis

279

Amino Acids

30.48

Weight (kDa)

9.36

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 34 - 216 3.6e-27 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011982)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 565
AasI GACNNNNNNGTC 1 cut(s) 161
Acc36I ACCTGC 2 cut(s) 565, 801
AccB1I GGYRCC 2 cut(s) 71, 257
AccB7I CCANNNNNTGG 1 cut(s) 184
AccBSI CCGCTC 1 cut(s) 598
AccI GTMKAC 1 cut(s) 105
AclWI GGATC 2 cut(s) 273, 743
AcoI YGGCCR 2 cut(s) 112, 615
AcvI CACGTG 1 cut(s) 451
AcyI GRCGYC 1 cut(s) 72
AdeI CACNNNGTG 1 cut(s) 662
AfaI GTAC 2 cut(s) 356, 539
AfiI CCNNNNNNNGG 5 cut(s) 184, 380, 454, 490, 658
AflIII ACRYGT 1 cut(s) 450
AgsI TTSAA 3 cut(s) 337, 418, 499
AjiI CACGTC 1 cut(s) 517
AjnI CCWGG 4 cut(s) 183, 746, 770, 796
AluBI AGCT 4 cut(s) 17, 430, 682, 727
AluI AGCT 4 cut(s) 17, 430, 682, 727
Alw21I GWGCWC 1 cut(s) 729
Alw26I GTCTC 1 cut(s) 827
AlwI GGATC 2 cut(s) 273, 743
Ama87I CYCGRG 2 cut(s) 308, 350
AoxI GGCC 4 cut(s) 58, 112, 230, 615
ApeKI GCWGC 3 cut(s) 17, 641, 674
AspA2I CCTAGG 1 cut(s) 343
AspS9I GGNCC 7 cut(s) 174, 187, 231, 295, 367, 391, 600
AsuC2I CCSGG 3 cut(s) 229, 293, 653
AsuHPI GGTGA 5 cut(s) 25, 277, 289, 427, 674
AvaI CYCGRG 2 cut(s) 308, 350
AvaII GGWCC 6 cut(s) 174, 187, 295, 367, 391, 600
AvrII CCTAGG 1 cut(s) 343
BaeGI GKGCMC 1 cut(s) 658
BalI TGGCCA 1 cut(s) 617
BanI GGYRCC 2 cut(s) 71, 257
BanII GRGCYC 2 cut(s) 351, 729
BbrPI CACGTG 1 cut(s) 451
Bbv12I GWGCWC 1 cut(s) 729
BbvI GCAGC 3 cut(s) 4, 628, 661
BccI CCATC 3 cut(s) 257, 268, 386
BceAI ACGGC 4 cut(s) 5, 107, 124, 545
BciT130I CCWGG 4 cut(s) 185, 748, 772, 798
BcnI CCSGG 3 cut(s) 229, 293, 653
BcoDI GTCTC 1 cut(s) 827
BfaI CTAG 1 cut(s) 344
BfoI RGCGCY 2 cut(s) 75, 461
BfuAI ACCTGC 2 cut(s) 565, 801
BglI GCCNNNNNGGC 1 cut(s) 566
BglII AGATCT 1 cut(s) 330
BisI GCNGC 6 cut(s) 18, 51, 112, 484, 642, 675
BlnI CCTAGG 1 cut(s) 343
BlpI GCTNAGC 1 cut(s) 582
BlsI GCNGC 6 cut(s) 19, 52, 113, 485, 643, 676
Bme1390I CCNGG 7 cut(s) 185, 229, 293, 653, 748, 772, 798
Bme18I GGWCC 6 cut(s) 174, 187, 295, 367, 391, 600
BmeT110I CYCGRG 2 cut(s) 308, 350
BmgBI CACGTC 1 cut(s) 517
BmgT120I GGNCC 7 cut(s) 174, 187, 231, 295, 367, 391, 600
BmiI GGNNCC 8 cut(s) 73, 175, 176, 189, 197, 233, 259, 296
BmrFI CCNGG 7 cut(s) 185, 229, 293, 653, 748, 772, 798
BmsI GCATC 1 cut(s) 682
BplI GAGNNNNNCTC 2 cut(s) 111, 143
BpmI CTGGAG 3 cut(s) 182, 254, 566
Bpu10I CCTNAGC 1 cut(s) 728
Bpu1102I GCTNAGC 1 cut(s) 582
BpuEI CTTGAG 1 cut(s) 380
BpuMI CCSGG 3 cut(s) 229, 293, 653
BsaAI YACGTR 1 cut(s) 451
BsaHI GRCGYC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 827
BsaJI CCNNGG 9 cut(s) 61, 142, 191, 261, 309, 343, 489, 561, 747
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 5 cut(s) 184, 380, 454, 490, 658
Bse3DI GCAATG 1 cut(s) 391
BseBI CCWGG 4 cut(s) 185, 748, 772, 798
BseDI CCNNGG 9 cut(s) 61, 142, 191, 261, 309, 343, 489, 561, 747
BseGI GGATG 2 cut(s) 219, 517
BseLI CCNNNNNNNGG 5 cut(s) 184, 380, 454, 490, 658
BseMI GCAATG 1 cut(s) 391
BseMII CTCAG 4 cut(s) 341, 596, 615, 742
BsePI GCGCGC 3 cut(s) 44, 46, 556
BseRI GAGGAG 2 cut(s) 235, 422
BseSI GKGCMC 1 cut(s) 658
BseXI GCAGC 3 cut(s) 4, 628, 661
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 4 cut(s) 60, 114, 232, 617
BshNI GGYRCC 2 cut(s) 71, 257
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 729
BsiHKCI CYCGRG 2 cut(s) 308, 350
BsiSI CCGG 4 cut(s) 229, 255, 292, 652
BsiWI CGTACG 1 cut(s) 537
BslFI GGGAC 4 cut(s) 173, 187, 429, 729
BslI CCNNNNNNNGG 5 cut(s) 184, 380, 454, 490, 658
BsmAI GTCTC 1 cut(s) 827
BsmFI GGGAC 4 cut(s) 173, 187, 429, 729
BsnI GGCC 4 cut(s) 60, 114, 232, 617
Bso31I GGTCTC 1 cut(s) 827
BsoBI CYCGRG 2 cut(s) 308, 350
Bsp1286I GDGCHC 3 cut(s) 351, 658, 729
Bsp143I GATC 6 cut(s) 265, 330, 424, 522, 720, 735
Bsp1720I GCTNAGC 1 cut(s) 582
Bsp19I CCATGG 1 cut(s) 191
BspANI GGCC 4 cut(s) 60, 114, 232, 617
BspCNI CTCAG 4 cut(s) 340, 595, 616, 741
BspLI GGNNCC 8 cut(s) 73, 175, 176, 189, 197, 233, 259, 296
BspMI ACCTGC 2 cut(s) 565, 801
BspPI GGATC 2 cut(s) 273, 743
BspT107I GGYRCC 2 cut(s) 71, 257
BspTNI GGTCTC 1 cut(s) 827
BsrBI CCGCTC 1 cut(s) 598
BsrDI GCAATG 1 cut(s) 391
BssECI CCNNGG 9 cut(s) 61, 142, 191, 261, 309, 343, 489, 561, 747
BssHII GCGCGC 3 cut(s) 44, 46, 556
BssMI GATC 6 cut(s) 265, 330, 424, 522, 720, 735
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 4 cut(s) 191, 261, 343, 489
Bst2UI CCWGG 4 cut(s) 185, 748, 772, 798
Bst4CI ACNGT 4 cut(s) 79, 103, 137, 163
Bst6I CTCTTC 1 cut(s) 134
BstACI GRCGYC 1 cut(s) 72
BstBAI YACGTR 1 cut(s) 451
BstC8I GCNNGC 8 cut(s) 46, 48, 116, 120, 319, 558, 639, 768
BstDEI CTNAG 4 cut(s) 327, 582, 624, 728
BstDSI CCRYGG 3 cut(s) 142, 191, 561
BstF5I GGATG 2 cut(s) 219, 517
BstH2I RGCGCY 2 cut(s) 75, 461
BstKTI GATC 6 cut(s) 268, 333, 427, 525, 723, 738
BstMAI GTCTC 1 cut(s) 827
BstMBI GATC 6 cut(s) 265, 330, 424, 522, 720, 735
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 6 cut(s) 50, 202, 407, 480, 566, 634
BstNI CCWGG 4 cut(s) 185, 748, 772, 798
BstNSI RCATGY 1 cut(s) 814
BstSCI CCNGG 7 cut(s) 183, 227, 291, 651, 746, 770, 796
BstSLI GKGCMC 1 cut(s) 658
BstV1I GCAGC 3 cut(s) 4, 628, 661
BstX2I RGATCY 2 cut(s) 265, 330
BstXI CCANNNNNNTGG 1 cut(s) 610
BstYI RGATCY 2 cut(s) 265, 330
BsuRI GGCC 4 cut(s) 60, 114, 232, 617
BtgI CCRYGG 3 cut(s) 142, 191, 561
BtrI CACGTC 1 cut(s) 517
BtsCI GGATG 2 cut(s) 219, 517
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 2 cut(s) 159, 408
BveI ACCTGC 2 cut(s) 565, 801
Cac8I GCNNGC 8 cut(s) 46, 48, 116, 120, 319, 558, 639, 768
Cfr13I GGNCC 7 cut(s) 174, 187, 231, 295, 367, 391, 600
Cfr42I CCGCGG 1 cut(s) 145
CseI GACGC 1 cut(s) 431
Csp6I GTAC 2 cut(s) 355, 538
CviAII CATG 2 cut(s) 192, 811
CviQI GTAC 2 cut(s) 355, 538
DdeI CTNAG 4 cut(s) 327, 582, 624, 728
DinI GGCGCC 1 cut(s) 73
DpnI GATC 6 cut(s) 267, 332, 426, 524, 722, 737
DpnII GATC 6 cut(s) 265, 330, 424, 522, 720, 735
DraIII CACNNNGTG 1 cut(s) 662
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
EaeI YGGCCR 2 cut(s) 112, 615
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
EciI GGCGGA 1 cut(s) 608
Ecl136II GAGCTC 1 cut(s) 727
Eco130I CCWWGG 4 cut(s) 191, 261, 343, 489
Eco24I GRGCYC 2 cut(s) 351, 729
Eco31I GGTCTC 1 cut(s) 827
Eco47I GGWCC 6 cut(s) 174, 187, 295, 367, 391, 600
Eco53kI GAGCTC 1 cut(s) 727
Eco72I CACGTG 1 cut(s) 451
Eco88I CYCGRG 2 cut(s) 308, 350
EcoICRI GAGCTC 1 cut(s) 727
EcoO109I RGGNCCY 4 cut(s) 174, 295, 367, 391
EcoRII CCWGG 4 cut(s) 183, 746, 770, 796
EcoT14I CCWWGG 4 cut(s) 191, 261, 343, 489
EcoT38I GRGCYC 2 cut(s) 351, 729
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
ErhI CCWWGG 4 cut(s) 191, 261, 343, 489
FaeI CATG 2 cut(s) 195, 814
FaiI YATR 3 cut(s) 193, 713, 812
FaqI GGGAC 4 cut(s) 173, 187, 429, 729
FatI CATG 2 cut(s) 191, 810
FauI CCCGC 2 cut(s) 630, 700
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 6 cut(s) 18, 51, 112, 484, 642, 675
FokI GGATG 2 cut(s) 206, 524
FriOI GRGCYC 2 cut(s) 351, 729
Fsp4HI GCNGC 6 cut(s) 18, 51, 112, 484, 642, 675
FspBI CTAG 1 cut(s) 344
GluI GCNGC 6 cut(s) 18, 51, 112, 484, 642, 675
GsuI CTGGAG 3 cut(s) 182, 254, 566
HaeII RGCGCY 2 cut(s) 75, 461
HaeIII GGCC 4 cut(s) 60, 114, 232, 617
HapII CCGG 4 cut(s) 229, 255, 292, 652
HgaI GACGC 1 cut(s) 431
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 2 cut(s) 195, 814
HincII GTYRAC 2 cut(s) 85, 106
HindII GTYRAC 2 cut(s) 85, 106
HinfI GANTC 3 cut(s) 147, 280, 478
HpaII CCGG 4 cut(s) 229, 255, 292, 652
HphI GGTGA 5 cut(s) 25, 277, 289, 427, 674
Hpy166II GTNNAC 2 cut(s) 85, 106
Hpy188I TCNGA 2 cut(s) 330, 691
Hpy188III TCNNGA 4 cut(s) 199, 271, 509, 730
Hpy8I GTNNAC 2 cut(s) 85, 106
Hpy99I CGWCG 5 cut(s) 44, 83, 107, 110, 158
HpyAV CCTTC 3 cut(s) 64, 250, 358
HpyCH4III ACNGT 4 cut(s) 79, 103, 137, 163
HpyCH4IV ACGT 3 cut(s) 39, 450, 516
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 202, 407, 480, 566, 634
HpyF3I CTNAG 4 cut(s) 327, 582, 624, 728
HpySE526I ACGT 3 cut(s) 39, 450, 516
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 2 cut(s) 195, 814
KasI GGCGCC 1 cut(s) 71
KflI GGGWCCC 1 cut(s) 174
KspI CCGCGG 1 cut(s) 145
Kzo9I GATC 6 cut(s) 265, 330, 424, 522, 720, 735
LmnI GCTCC 3 cut(s) 201, 435, 595
Lsp1109I GCAGC 3 cut(s) 4, 628, 661
LweI GCATC 1 cut(s) 682
MaeI CTAG 1 cut(s) 344
MaeII ACGT 3 cut(s) 39, 450, 516
MalI GATC 6 cut(s) 267, 332, 426, 524, 722, 737
MauBI CGCGCGCG 1 cut(s) 44
MbiI CCGCTC 1 cut(s) 598
MboI GATC 6 cut(s) 265, 330, 424, 522, 720, 735
MboII GAAGA 4 cut(s) 121, 205, 325, 817
MflI RGATCY 2 cut(s) 265, 330
MhlI GDGCHC 3 cut(s) 351, 658, 729
MlsI TGGCCA 1 cut(s) 617
MluCI AATT 1 cut(s) 413
MluNI TGGCCA 1 cut(s) 617
Mly113I GGCGCC 1 cut(s) 72
MlyI GAGTC 1 cut(s) 156
Mox20I TGGCCA 1 cut(s) 617
MscI TGGCCA 1 cut(s) 617
Msp20I TGGCCA 1 cut(s) 617
MspA1I CMGCKG 1 cut(s) 144
MspI CCGG 4 cut(s) 229, 255, 292, 652
MspR9I CCNGG 7 cut(s) 185, 229, 293, 653, 748, 772, 798
MvaI CCWGG 4 cut(s) 185, 748, 772, 798
MwoI GCNNNNNNNGC 6 cut(s) 50, 202, 407, 480, 566, 634
NarI GGCGCC 1 cut(s) 72
NciI CCSGG 3 cut(s) 229, 293, 653
NcoI CCATGG 1 cut(s) 191
NdeII GATC 6 cut(s) 265, 330, 424, 522, 720, 735
NlaIII CATG 2 cut(s) 195, 814
NlaIV GGNNCC 8 cut(s) 73, 175, 176, 189, 197, 233, 259, 296
NspI RCATGY 1 cut(s) 814
PaeR7I CTCGAG 1 cut(s) 350
PaqCI CACCTGC 1 cut(s) 565
PauI GCGCGC 3 cut(s) 44, 46, 556
PcsI WCGNNNNNNNCGW 1 cut(s) 533
PfeI GAWTC 2 cut(s) 280, 478
Pfl23II CGTACG 1 cut(s) 537
PflFI GACNNNGTC 1 cut(s) 161
PflMI CCANNNNNTGG 1 cut(s) 184
PkrI GCNGC 6 cut(s) 19, 52, 113, 485, 643, 676
PleI GAGTC 1 cut(s) 155
PluTI GGCGCC 1 cut(s) 75
PmaCI CACGTG 1 cut(s) 451
PmlI CACGTG 1 cut(s) 451
PpsI GAGTC 1 cut(s) 155
Ppu21I YACGTR 1 cut(s) 451
PpuMI RGGWCCY 4 cut(s) 174, 295, 367, 391
Psp124BI GAGCTC 1 cut(s) 729
Psp5II RGGWCCY 4 cut(s) 174, 295, 367, 391
Psp6I CCWGG 4 cut(s) 183, 746, 770, 796
PspCI CACGTG 1 cut(s) 451
PspGI CCWGG 4 cut(s) 183, 746, 770, 796
PspLI CGTACG 1 cut(s) 537
PspN4I GGNNCC 8 cut(s) 73, 175, 176, 189, 197, 233, 259, 296
PspPI GGNCC 7 cut(s) 174, 187, 231, 295, 367, 391, 600
PspPPI RGGWCCY 4 cut(s) 174, 295, 367, 391
PspXI VCTCGAGB 1 cut(s) 350
PsuI RGATCY 2 cut(s) 265, 330
PsyI GACNNNGTC 1 cut(s) 161
PteI GCGCGC 3 cut(s) 44, 46, 556
RsaI GTAC 2 cut(s) 356, 539
RsaNI GTAC 2 cut(s) 355, 538
SacI GAGCTC 1 cut(s) 729
SacII CCGCGG 1 cut(s) 145
SalI GTCGAC 1 cut(s) 104
SatI GCNGC 6 cut(s) 18, 51, 112, 484, 642, 675
Sau3AI GATC 6 cut(s) 265, 330, 424, 522, 720, 735
Sau96I GGNCC 7 cut(s) 174, 187, 231, 295, 367, 391, 600
SchI GAGTC 1 cut(s) 156
ScrFI CCNGG 7 cut(s) 185, 229, 293, 653, 748, 772, 798
SduI GDGCHC 3 cut(s) 351, 658, 729
SfaNI GCATC 1 cut(s) 682
SfoI GGCGCC 1 cut(s) 73
Sfr274I CTCGAG 1 cut(s) 350
Sfr303I CCGCGG 1 cut(s) 145
SgrBI CCGCGG 1 cut(s) 145
SgrDI CGTCGACG 1 cut(s) 104
SinI GGWCC 6 cut(s) 174, 187, 295, 367, 391, 600
SlaI CTCGAG 1 cut(s) 350
SmlI CTYRAG 2 cut(s) 350, 395
SmoI CTYRAG 2 cut(s) 350, 395
Sse9I AATT 1 cut(s) 413
SspDI GGCGCC 1 cut(s) 71
SspMI CTAG 1 cut(s) 344
SstI GAGCTC 1 cut(s) 729
StyD4I CCNGG 7 cut(s) 183, 227, 291, 651, 746, 770, 796
StyI CCWWGG 4 cut(s) 191, 261, 343, 489
TaaI ACNGT 4 cut(s) 79, 103, 137, 163
TaiI ACGT 3 cut(s) 42, 453, 519
TaqI TCGA 7 cut(s) 105, 132, 153, 216, 351, 723, 738
TasI AATT 1 cut(s) 413
TauI GCSGC 3 cut(s) 53, 114, 486
TfiI GAWTC 2 cut(s) 280, 478
TscAI CASTG 2 cut(s) 166, 408
TseI GCWGC 3 cut(s) 17, 641, 674
TspRI CASTG 2 cut(s) 166, 408
Tth111I GACNNNGTC 1 cut(s) 161
Van91I CCANNNNNTGG 1 cut(s) 184
VpaK11BI GGWCC 6 cut(s) 174, 187, 295, 367, 391, 600
XceI RCATGY 1 cut(s) 814
XcmI CCANNNNNNNNNTGG 1 cut(s) 610
XhoI CTCGAG 1 cut(s) 350
XmaJI CCTAGG 1 cut(s) 343
XmiI GTMKAC 1 cut(s) 105
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.