Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011982

Physical Location & Seq

Genomic Coordinates Reverse (-)

70099331 .. 70105995

Gene Structure 6665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0576500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3030 bp

ATGGCGGTTTCTCAATTCTCTTGTAGTGGAGCAATGGAGTCCTCGTTGCACTACAAATCGCAGTCGAAACTGATCGATTTCGGCTCCAGGAGGAGCTTCAGTTCGCGGTTGTTGCTGGCGAGGACGTTGAATTTGAATCCGAGGACTCATCGGAGCCGCCACCGGAGGTCGGTTCTCGTCACCAACGTCATAAAGGATCCGGACGTCGCACAAGAAAATACAGGCAGCTCATTCACACCTGATGCTGTATCCGTCGCTTCAAGTATCAAATACCATGCTGAGTTTACGCCGTCGTTTTCTCCGGAGAAATTTGAGCTTCCAAAGGCCTACTTTGCAACTGCGCAAAGTGTCCGTGATGCGCTTATTGTTAACTGGAATGCAACGAATGAATGTTATGAAAAGTTGCATGTAAAGCAGGCATATTATTTGTCAATGGAATTTCTACAGGGTAGAGCGCTGTTAAATGCAGTTGGTAATTTGGAGCTAGCAGGCGCATATGCAGAGGCTTTAAGCAAGCTTGGACACAAATTAGAAACTGTGGCTGACCAGGAGCCAGATGCTGCCCTCGGGAATGGGGGTCTCGGTCGGCTTGCCTCATGCTTCTTGGATTCTTTGGCAACTTTGAACTACCCAGCATGGGGTTATGGACTTAGGTACAAGTATGGGTTATTTAAACAGCGAATTACCAAAGAAGGTCAAGAAGAAGTAGCTGAGGATTGGCTTGAGCTGGGAAATCCCTGGGAGATTGTGAGGAATGATGTTTCTTATCATGTAAAATTCTACGGCAATGTTGCTACTGGATCAGACGGAAAACGGCATTGGATTGGAGGAGAAGATATAGAGGCTGTTGCTTATGATGTTCCAATACCAGGATACAAAACTAAAACGACTATCAACCTGCGGCTTTGGTCAACCAAAGCTCCGTCAGAGGATTTTGATTTATATTCTTTTAATTCTGGGGAGCACACAAAAGCATGTGAAGCTTTAGCAAATGCCGAAAAGATTTGCTACGTACTTTATCCTGGCGATGACTCACTGGAGGGAAAGACACTTCGTCTGAAGCAACAATATACTTTATGTTCAGCTTCTCTCCAAGATATTGTTGCACGTTTTGAGAGAAGATCCGGAACAAACGTAAACTGGGAAGAGTTCCCCGAGAAGGTTGCAGTGCAGATGAATGACACTCATCCAACTCTCTGCATTCCTGAGTTGATTAGGATTTTAATGGATTTGAAGGGTTTGACATGGAAGGAGGCCTGGAATATTACTCAAAGAACGGTTGCATATACAAACCATACTGTTCTACCTGAGGCATTGGAGAAATGGAGTTTGGAACTTATGCAGAAACTGCTTCCTCGACATGTGGAGATCATAGAACTGATAGATGAGGAGCTCATTAACACCATAGTCTCGGAGTATGGTACAGAAGATTGTGATTTATTAGAAAAGAAACTGAAGGAGATGAGAATCTTAGAAAATGTTGATTTGCCTGCCACATATGCAAAGTTATTTGTTAAACCCAAAGAAAGCTCCGTTGTTCTTCCCACTGAAAAACTTGAAGATTCAAAAAAGGATGTCGGGGCCGTTGATGAAGAAATTGCGCAAAAACTTGAAGACTCAAAAGAGGATGTCGGGGCCGTTGATGAAGAAATTGTGCAAAAACTTGAAGACTCAAAAAAGGATGTCGGGGCCATTGATGAAGAAATTGAGCCTGAGCAGAAACCCATAGAGGAAAAGGATGTCGGGGTCATTGATGAAGAAATTGAGCCTGAGAAGAAACCCATAGAGGAAAAGAAAAAGGCACCCCCAAAACCACCTAAGCTAGTTCGTATGGCAAACCTTTGTGTTGCAGGTGGTCATGCAGTAAATGGTGTTGCTGAGATACATAGTGAAATAGTAAAGGATGAAGTATTCAATTCATTTTATAAATTGTGGCCTAAGAAGTTTCAAAACAAGACAAATGGCGTGACACCAAGAAGATGGATCCGCTTCTGCAATCCAGATTTGAGTAATATTCTAACCAAATGGATTGGCACAGAAGACTGGGTCTTAAATACTGAAAAACTGGCCAAGTTACGACAGTTTGCGGATGATGAGGATCTCCAAACTCAATGGAGGCAAGCAAAAAGGAGCAACAAGTTGAAAGTTGCATCATTCATTAAAGAAAAAACAGGATTTTCTGTCAACCCTGATGCAATGTTTGATATCCAGGTGAAGCGCATTCATGAATACAAGAGACAACTTATGAATATTTTGGGAATTGTTTACCGGTACAAGAAAATGAAAGAAATGAGTGCTTCACAAAGGAAAGCAAAGTTTGTTCCACGTGTTTGTATGTTCGGAGGAAAAGCATTTACAACGTATGTACAAGCCAAGAGAATTGTGAAGTTTATCACAGATGTCGCGGAGACTGTAAATCATGATCCTAGTATAGGTGATCTACTAAAGGTTATCTTTGTACCTGATTATAATGTCAGTGTTGCTGAATTATTAATTCCTGCAAGTGAGCTCTCACAGCACATCAGTACTGCCGGGATGGAGGCCAGTGGCACCAGCAACATGAAGTTTGCAATGAATGGCTGCATCCTAATTGGGACTCTGGATGGAGCCAATGTTGAAATAAGAGAAGAGGTTGGAGCAGATAACTTTTTCCTCTTTGGTGCTGAAGCTCATGAGATTGCTGGGCTGAGAAAAGAACGAGCTGAGGGGAAGTTTGTTCCAGACCCCCGTTTTGAAGAAGTCAAGGAATTTGTCAGTAGTGGTGTTTTTGGGTTGTACGATTATGATGACCTGATCGGATCCTTGGAAGGAAATGAAGGATTTGGCCGTGCTGATTACTTCCTTGTTGGCAAAGACTTCCCCAGTTACATAGAATGCCAAGAGAAGGTTGATGAGGCGTATCGGGACCAAAAGAAATGGACAAGAATGTCAATCCTGAACACAGCAGGCTCATCCAAGTTTAGCAGTGACAGAACCATCCACGAATATGCTAAAGACATATGGAACATTAACCCTGTCGAATTACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0016020 GO:0016043 GO:0019866 GO:0022622 GO:0030312 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051302 GO:0051782 GO:0065007 GO:0070013 GO:0070469 GO:0071731 GO:0071840 GO:0071944 GO:0090696 GO:0097366 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:0099402 GO:1901698 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

1009

Amino Acids

114.11

Weight (kDa)

5.5

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosphorylase	PF00343	171 - 493	3.9e-128	Carbohydrate phosphorylase
Phosphorylase	PF00343	604 - 1003	3.8e-166	Carbohydrate phosphorylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27280 AT3G27280 AT5G40770
fragaria_vesca	FvH4_6g52780
malus_domestica	MD09G1016800.v1.1 MD17G1017200.v1.1
prunus_persica	Prupe.3G300700_v2.0.a1 Prupe.3G300700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0174411
rosa_laevigata	RLG00000022263
rosa_multiflora	Rmu_co8273923.1_g000001 Rmu_sc0003649.1_g000029
rosa_roxburghii	Rroxscaffold_2G00078240
rosa_rugosa	Rorug02G0576500
rosa_samantha	Rh2AG657700 Rh2BG668800 Rh2CG631700 Rh2DG682300
rosa_wichuraiana	Rw2G053870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1926, 2469
AarI	CACCTGC	1 cut(s)	1841
AasI	GACNNNNNNGTC	1 cut(s)	2926
AatII	GACGTC	1 cut(s)	207
Acc16I	TGCGCA	2 cut(s)	342, 1602
Acc36I	ACCTGC	2 cut(s)	906, 1841
AccB1I	GGYRCC	2 cut(s)	1801, 2549
AccII	CGCG	2 cut(s)	106, 2405
AccIII	TCCGGA	3 cut(s)	199, 301, 1124
AciI	CCGC	7 cut(s)	5, 106, 157, 901, 1987, 2087, 2405
AcoI	YGGCCR	2 cut(s)	2067, 2824
AcsI	RAATTY	5 cut(s)	130, 308, 437, 776, 2747
AcuI	CTGAAG	4 cut(s)	82, 1079, 1475, 2685
AcvI	CACGTG	1 cut(s)	2327
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	8 cut(s)	656, 1014, 1423, 2273, 2367, 2460, 2527, 2777
AfeI	AGCGCT	1 cut(s)	456
AfiI	CCNNNNNNNGG	7 cut(s)	169, 637, 638, 869, 1159, 2432, 2884
AflIII	ACRYGT	2 cut(s)	1360, 2326
AgeI	ACCGGT	1 cut(s)	2268
AhdI	GACNNNNNGTC	1 cut(s)	1053
AjnI	CCWGG	7 cut(s)	86, 546, 737, 868, 1021, 1256, 2208
AjuI	GAANNNNNNNTTGG	4 cut(s)	802, 834, 1313, 1345
AloI	GAACNNNNNNTCC	2 cut(s)	85, 117
Alw21I	GWGCWC	3 cut(s)	966, 1395, 2511
Alw26I	GTCTC	4 cut(s)	584, 1414, 2230, 2402
AlwNI	CAGNNNCTG	2 cut(s)	560, 1348
Ama87I	CYCGRG	2 cut(s)	566, 1154
Aor13HI	TCCGGA	3 cut(s)	199, 301, 1124
Aor51HI	AGCGCT	1 cut(s)	456
AoxI	GGCC	9 cut(s)	324, 1254, 1581, 1635, 1689, 1934, 2067, 2541, 2824
ApeKI	GCWGC	3 cut(s)	225, 560, 2580
ApoI	RAATTY	5 cut(s)	130, 308, 437, 776, 2747
ArsI	GACNNNNNNTTYG	4 cut(s)	115, 147, 2714, 2746
AseI	ATTAAT	1 cut(s)	2492
AsiGI	ACCGGT	1 cut(s)	2268
AspLEI	GCGC	6 cut(s)	343, 361, 457, 494, 1603, 2220
AspS9I	GGNCC	4 cut(s)	1581, 1635, 1689, 2905
AsuC2I	CCSGG	1 cut(s)	2533
AsuHPI	GGTGA	3 cut(s)	172, 2224, 2447
AsuNHI	GCTAGC	1 cut(s)	484
AvaI	CYCGRG	2 cut(s)	566, 1154
AvaII	GGWCC	1 cut(s)	2905
AxyI	CCTNAGG	1 cut(s)	1308
BalI	TGGCCA	1 cut(s)	2069
BamHI	GGATCC	3 cut(s)	196, 1983, 2798
BanI	GGYRCC	2 cut(s)	1801, 2549
BanII	GRGCYC	2 cut(s)	1395, 2511
BbrPI	CACGTG	1 cut(s)	2327
BbsI	GAAGAC	3 cut(s)	1620, 1674, 2046
Bbv12I	GWGCWC	3 cut(s)	966, 1395, 2511
BbvCI	CCTCAGC	2 cut(s)	711, 2703
BbvI	GCAGC	3 cut(s)	237, 547, 2567
BccI	CCATC	4 cut(s)	1974, 2530, 2597, 2984
BceAI	ACGGC	6 cut(s)	274, 799, 830, 1568, 1622, 2811
BcgI	CGANNNNNNTGC	2 cut(s)	1145, 1179
BciT130I	CCWGG	7 cut(s)	88, 548, 739, 870, 1023, 1258, 2210
BciVI	GTATCC	2 cut(s)	259, 866
BcnI	CCSGG	1 cut(s)	2533
BcoDI	GTCTC	4 cut(s)	584, 1414, 2230, 2402
BfaI	CTAG	3 cut(s)	485, 1823, 2427
BfmI	CTRYAG	1 cut(s)	443
BfoI	RGCGCY	1 cut(s)	458
BfuAI	ACCTGC	2 cut(s)	906, 1841
BfuI	GTATCC	2 cut(s)	259, 866
BisI	GCNGC	5 cut(s)	157, 226, 561, 902, 2581
BlsI	GCNGC	5 cut(s)	158, 227, 562, 903, 2582
BmcAI	AGTACT	1 cut(s)	2527
Bme1390I	CCNGG	8 cut(s)	88, 548, 739, 870, 1023, 1258, 2210, 2533
Bme18I	GGWCC	1 cut(s)	2905
BmeRI	GACNNNNNGTC	1 cut(s)	1053
BmeT110I	CYCGRG	2 cut(s)	566, 1154
BmgT120I	GGNCC	4 cut(s)	1581, 1635, 1689, 2905
BmrFI	CCNGG	8 cut(s)	88, 548, 739, 870, 1023, 1258, 2210, 2533
BmrI	ACTGGG	3 cut(s)	1150, 2053, 2856
BmsI	GCATC	6 cut(s)	232, 346, 547, 2159, 2182, 2592
BmtI	GCTAGC	1 cut(s)	488
BmuI	ACTGGG	3 cut(s)	1150, 2053, 2856
BpiI	GAAGAC	3 cut(s)	1620, 1674, 2046
BpmI	CTGGAG	2 cut(s)	70, 1058
Bpu10I	CCTNAGC	4 cut(s)	711, 1713, 1818, 2703
BpuEI	CTTGAG	1 cut(s)	743
BpuMI	CCSGG	1 cut(s)	2533
Bsa29I	ATCGAT	1 cut(s)	75
BsaAI	YACGTR	2 cut(s)	1012, 2327
BsaBI	GATNNNNATC	2 cut(s)	1466, 2097
BsaHI	GRCGYC	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	584
BsaJI	CCNNGG	5 cut(s)	140, 565, 737, 738, 2802
BsaWI	WCCGGW	5 cut(s)	162, 199, 301, 1124, 2268
BsaXI	ACNNNNNCTCC	8 cut(s)	29, 59, 85, 115, 904, 934, 2598, 2628
Bsc4I	CCNNNNNNNGG	7 cut(s)	169, 637, 638, 869, 1159, 2432, 2884
Bse118I	RCCGGY	1 cut(s)	2268
Bse1I	ACTGG	8 cut(s)	377, 802, 1041, 1145, 2048, 2070, 2544, 2862
Bse21I	CCTNAGG	1 cut(s)	1308
Bse3DI	GCAATG	4 cut(s)	39, 793, 2202, 2577
Bse8I	GATNNNNATC	2 cut(s)	1466, 2097
BseAI	TCCGGA	3 cut(s)	199, 301, 1124
BseBI	CCWGG	7 cut(s)	88, 548, 739, 870, 1023, 1258, 2210
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	5 cut(s)	140, 565, 737, 738, 2802
BseJI	GATNNNNATC	2 cut(s)	1466, 2097
BseLI	CCNNNNNNNGG	7 cut(s)	169, 637, 638, 869, 1159, 2432, 2884
BseMI	GCAATG	4 cut(s)	39, 793, 2202, 2577
BseMII	CTCAG	9 cut(s)	270, 702, 1197, 1299, 1704, 1761, 1869, 2678, 2694
BseNI	ACTGG	8 cut(s)	377, 802, 1041, 1145, 2048, 2070, 2544, 2862
BseRI	GAGGAG	3 cut(s)	106, 843, 1403
BseXI	GCAGC	3 cut(s)	237, 547, 2567
BseYI	CCCAGC	3 cut(s)	631, 727, 2681
BsgI	GTGCAG	1 cut(s)	1190
Bsh1236I	CGCG	2 cut(s)	106, 2405
Bsh1285I	CGRYCG	1 cut(s)	586
BshFI	GGCC	9 cut(s)	326, 1256, 1583, 1637, 1691, 1936, 2069, 2543, 2826
BshNI	GGYRCC	2 cut(s)	1801, 2549
BshTI	ACCGGT	1 cut(s)	2268
BshVI	ATCGAT	1 cut(s)	75
BsiEI	CGRYCG	1 cut(s)	586
BsiHKAI	GWGCWC	3 cut(s)	966, 1395, 2511
BsiHKCI	CYCGRG	2 cut(s)	566, 1154
BsiSI	CCGG	6 cut(s)	163, 200, 302, 1125, 2269, 2532
BslFI	GGGAC	2 cut(s)	2608, 2918
BslI	CCNNNNNNNGG	7 cut(s)	169, 637, 638, 869, 1159, 2432, 2884
BsmAI	GTCTC	4 cut(s)	584, 1414, 2230, 2402
BsmFI	GGGAC	2 cut(s)	2608, 2918
BsmI	GAATGC	4 cut(s)	382, 1200, 2220, 2879
BsnI	GGCC	9 cut(s)	326, 1256, 1583, 1637, 1691, 1936, 2069, 2543, 2826
Bso31I	GGTCTC	1 cut(s)	584
BsoBI	CYCGRG	2 cut(s)	566, 1154
Bsp1286I	GDGCHC	3 cut(s)	966, 1395, 2511
Bsp13I	TCCGGA	3 cut(s)	199, 301, 1124
Bsp1407I	TGTACA	1 cut(s)	2365
BspACI	CCGC	7 cut(s)	5, 106, 157, 901, 1987, 2087, 2405
BspANI	GGCC	9 cut(s)	326, 1256, 1583, 1637, 1691, 1936, 2069, 2543, 2826
BspCNI	CTCAG	9 cut(s)	271, 703, 1198, 1300, 1705, 1762, 1870, 2679, 2695
BspDI	ATCGAT	1 cut(s)	75
BspEI	TCCGGA	3 cut(s)	199, 301, 1124
BspFNI	CGCG	2 cut(s)	106, 2405
BspHI	TCATGA	3 cut(s)	2224, 2419, 2671
BspMI	ACCTGC	2 cut(s)	906, 1841
BspOI	GCTAGC	1 cut(s)	488
BspT107I	GGYRCC	2 cut(s)	1801, 2549
BspTNI	GGTCTC	1 cut(s)	584
BsrDI	GCAATG	4 cut(s)	39, 793, 2202, 2577
BsrFI	RCCGGY	1 cut(s)	2268
BsrGI	TGTACA	1 cut(s)	2365
BsrI	ACTGG	8 cut(s)	377, 802, 1041, 1145, 2048, 2070, 2544, 2862
BssAI	RCCGGY	1 cut(s)	2268
BssECI	CCNNGG	5 cut(s)	140, 565, 737, 738, 2802
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	2802
Bst2UI	CCWGG	7 cut(s)	88, 548, 739, 870, 1023, 1258, 2210
Bst4CI	ACNGT	6 cut(s)	538, 1279, 1300, 2082, 2413, 3027
Bst6I	CTCTTC	2 cut(s)	1140, 2622
BstACI	GRCGYC	1 cut(s)	204
BstAPI	GCANNNNNTGC	1 cut(s)	1348
BstAUI	TGTACA	1 cut(s)	2365
BstBAI	YACGTR	2 cut(s)	1012, 2327
BstC8I	GCNNGC	9 cut(s)	117, 417, 486, 490, 515, 591, 1491, 2121, 2947
BstENI	CCTNNNNNAGG	1 cut(s)	2430
BstFNI	CGCG	2 cut(s)	106, 2405
BstH2I	RGCGCY	1 cut(s)	458
BstHHI	GCGC	6 cut(s)	343, 361, 457, 494, 1603, 2220
BstMAI	GTCTC	4 cut(s)	584, 1414, 2230, 2402
BstMCI	CGRYCG	1 cut(s)	586
BstMWI	GCNNNNNNNGC	7 cut(s)	112, 332, 412, 980, 1348, 1499, 2515
BstNI	CCWGG	7 cut(s)	88, 548, 739, 870, 1023, 1258, 2210
BstNSI	RCATGY	3 cut(s)	410, 978, 1364
BstSCI	CCNGG	8 cut(s)	86, 546, 737, 868, 1021, 1256, 2208, 2531
BstSFI	CTRYAG	1 cut(s)	443
BstSNI	TACGTA	1 cut(s)	1012
BstUI	CGCG	2 cut(s)	106, 2405
BstV1I	GCAGC	3 cut(s)	237, 547, 2567
BstV2I	GAAGAC	3 cut(s)	1620, 1674, 2046
BstX2I	RGATCY	5 cut(s)	196, 1121, 1983, 2098, 2798
BstXI	CCANNNNNNTGG	1 cut(s)	1980
BstYI	RGATCY	5 cut(s)	196, 1121, 1983, 2098, 2798
Bsu15I	ATCGAT	1 cut(s)	75
Bsu36I	CCTNAGG	1 cut(s)	1308
BsuI	GTATCC	2 cut(s)	259, 866
BsuRI	GGCC	9 cut(s)	326, 1256, 1583, 1637, 1691, 1936, 2069, 2543, 2826
BsuTUI	ATCGAT	1 cut(s)	75
BtgZI	GCGATG	1 cut(s)	1041
BtsI	GCAGTG	2 cut(s)	1173, 2971
BtsIMutI	CAGTG	6 cut(s)	1034, 1173, 1545, 2482, 2551, 2971
BveI	ACCTGC	2 cut(s)	906, 1841
Cac8I	GCNNGC	9 cut(s)	117, 417, 486, 490, 515, 591, 1491, 2121, 2947
CaiI	CAGNNNCTG	2 cut(s)	560, 1348
CciI	TCATGA	3 cut(s)	2224, 2419, 2671
CfoI	GCGC	6 cut(s)	343, 361, 457, 494, 1603, 2220
Cfr10I	RCCGGY	1 cut(s)	2268
Cfr13I	GGNCC	4 cut(s)	1581, 1635, 1689, 2905
ClaI	ATCGAT	1 cut(s)	75
Csp6I	GTAC	8 cut(s)	655, 1013, 1422, 2272, 2366, 2459, 2526, 2776
CspAI	ACCGGT	1 cut(s)	2268
CviQI	GTAC	8 cut(s)	655, 1013, 1422, 2272, 2366, 2459, 2526, 2776
DraI	TTTAAA	1 cut(s)	673
DrdI	GACNNNNNNGTC	1 cut(s)	2926
DriI	GACNNNNNGTC	1 cut(s)	1053
DseDI	GACNNNNNNGTC	1 cut(s)	2926
EaeI	YGGCCR	2 cut(s)	2067, 2824
Eam1104I	CTCTTC	2 cut(s)	1140, 2622
Eam1105I	GACNNNNNGTC	1 cut(s)	1053
EarI	CTCTTC	2 cut(s)	1140, 2622
Ecl136II	GAGCTC	2 cut(s)	1393, 2509
Eco105I	TACGTA	1 cut(s)	1012
Eco130I	CCWWGG	1 cut(s)	2802
Eco147I	AGGCCT	2 cut(s)	326, 1256
Eco24I	GRGCYC	2 cut(s)	1395, 2511
Eco31I	GGTCTC	1 cut(s)	584
Eco32I	GATATC	1 cut(s)	2206
Eco47I	GGWCC	1 cut(s)	2905
Eco47III	AGCGCT	1 cut(s)	456
Eco53kI	GAGCTC	2 cut(s)	1393, 2509
Eco57I	CTGAAG	4 cut(s)	82, 1079, 1475, 2685
Eco72I	CACGTG	1 cut(s)	2327
Eco81I	CCTNAGG	1 cut(s)	1308
Eco88I	CYCGRG	2 cut(s)	566, 1154
EcoICRI	GAGCTC	2 cut(s)	1393, 2509
EcoNI	CCTNNNNNAGG	1 cut(s)	2430
EcoRII	CCWGG	7 cut(s)	86, 546, 737, 868, 1021, 1256, 2208
EcoRV	GATATC	1 cut(s)	2206
EcoT14I	CCWWGG	1 cut(s)	2802
EcoT38I	GRGCYC	2 cut(s)	1395, 2511
ErhI	CCWWGG	1 cut(s)	2802
FalI	AAGNNNNNCTT	4 cut(s)	314, 346, 2438, 2470
FaqI	GGGAC	2 cut(s)	2608, 2918
FauNDI	CATATG	3 cut(s)	496, 1498, 2999
Fnu4HI	GCNGC	5 cut(s)	157, 226, 561, 902, 2581
FriOI	GRGCYC	2 cut(s)	1395, 2511
Fsp4HI	GCNGC	5 cut(s)	157, 226, 561, 902, 2581
FspBI	CTAG	3 cut(s)	485, 1823, 2427
FspI	TGCGCA	2 cut(s)	342, 1602
GlaI	GCGC	6 cut(s)	342, 360, 456, 493, 1602, 2219
GluI	GCNGC	5 cut(s)	157, 226, 561, 902, 2581
GsaI	CCCAGC	3 cut(s)	635, 731, 2685
GsuI	CTGGAG	2 cut(s)	70, 1058
HaeII	RGCGCY	1 cut(s)	458
HaeIII	GGCC	9 cut(s)	326, 1256, 1583, 1637, 1691, 1936, 2069, 2543, 2826
HapII	CCGG	6 cut(s)	163, 200, 302, 1125, 2269, 2532
HhaI	GCGC	6 cut(s)	343, 361, 457, 494, 1603, 2220
Hin1I	GRCGYC	1 cut(s)	204
Hin6I	GCGC	6 cut(s)	341, 359, 455, 492, 1601, 2218
HinP1I	GCGC	6 cut(s)	341, 359, 455, 492, 1601, 2218
HincII	GTYRAC	3 cut(s)	370, 912, 2185
HindII	GTYRAC	3 cut(s)	370, 912, 2185
HindIII	AAGCTT	2 cut(s)	515, 981
HpaI	GTTAAC	1 cut(s)	370
HpaII	CCGG	6 cut(s)	163, 200, 302, 1125, 2269, 2532
HphI	GGTGA	3 cut(s)	172, 2224, 2447
Hpy166II	GTNNAC	6 cut(s)	285, 370, 912, 1138, 2185, 2266
Hpy188I	TCNGA	8 cut(s)	141, 153, 805, 928, 1059, 1414, 2342, 2798
Hpy8I	GTNNAC	6 cut(s)	285, 370, 912, 1138, 2185, 2266
Hpy99I	CGWCG	3 cut(s)	209, 257, 295
HpyAV	CCTTC	8 cut(s)	686, 1153, 1228, 1243, 1450, 2801, 2810, 2878
HpyCH4III	ACNGT	6 cut(s)	538, 1279, 1300, 2082, 2413, 3027
HpyCH4IV	ACGT	8 cut(s)	125, 186, 204, 1011, 1108, 1134, 2326, 2360
HpyF10VI	GCNNNNNNNGC	7 cut(s)	112, 332, 412, 980, 1348, 1499, 2515
HpySE526I	ACGT	8 cut(s)	125, 186, 204, 1011, 1108, 1134, 2326, 2360
Hsp92I	GRCGYC	1 cut(s)	204
HspAI	GCGC	6 cut(s)	341, 359, 455, 492, 1601, 2218
Kpn2I	TCCGGA	3 cut(s)	199, 301, 1124
KspAI	GTTAAC	1 cut(s)	370
Lsp1109I	GCAGC	3 cut(s)	237, 547, 2567
LweI	GCATC	6 cut(s)	232, 346, 547, 2159, 2182, 2592
MaeI	CTAG	3 cut(s)	485, 1823, 2427
MaeII	ACGT	8 cut(s)	125, 186, 204, 1011, 1108, 1134, 2326, 2360
MaeIII	GTNAC	5 cut(s)	178, 1966, 2073, 2864, 2966
MflI	RGATCY	5 cut(s)	196, 1121, 1983, 2098, 2798
MhlI	GDGCHC	3 cut(s)	966, 1395, 2511
MlsI	TGGCCA	1 cut(s)	2069
MluNI	TGGCCA	1 cut(s)	2069
MlyI	GAGTC	6 cut(s)	47, 139, 1025, 1610, 1664, 2590
MmeI	TCCRAC	2 cut(s)	1214, 2614
Mox20I	TGGCCA	1 cut(s)	2069
MroI	TCCGGA	3 cut(s)	199, 301, 1124
MscI	TGGCCA	1 cut(s)	2069
MslI	CAYNNNNRTG	1 cut(s)	2985
Msp20I	TGGCCA	1 cut(s)	2069
MspI	CCGG	6 cut(s)	163, 200, 302, 1125, 2269, 2532
MspR9I	CCNGG	8 cut(s)	88, 548, 739, 870, 1023, 1258, 2210, 2533
Mva1269I	GAATGC	4 cut(s)	382, 1200, 2220, 2879
MvaI	CCWGG	7 cut(s)	88, 548, 739, 870, 1023, 1258, 2210
MvnI	CGCG	2 cut(s)	106, 2405
MwoI	GCNNNNNNNGC	7 cut(s)	112, 332, 412, 980, 1348, 1499, 2515
NciI	CCSGG	1 cut(s)	2533
NdeI	CATATG	3 cut(s)	496, 1498, 2999
NheI	GCTAGC	1 cut(s)	484
NmuCI	GTSAC	3 cut(s)	178, 1966, 2966
NsbI	TGCGCA	2 cut(s)	342, 1602
NspI	RCATGY	3 cut(s)	410, 978, 1364
PagI	TCATGA	3 cut(s)	2224, 2419, 2671
PaqCI	CACCTGC	1 cut(s)	1841
PasI	CCCWGGG	1 cut(s)	738
PceI	AGGCCT	2 cut(s)	326, 1256
PciI	ACATGT	1 cut(s)	1360
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PctI	GAATGC	4 cut(s)	382, 1200, 2220, 2879
PfeI	GAWTC	4 cut(s)	136, 608, 1467, 1562
PflFI	GACNNNGTC	1 cut(s)	2045
PfoI	TCCNGGA	1 cut(s)	86
PinAI	ACCGGT	1 cut(s)	2268
PkrI	GCNGC	5 cut(s)	158, 227, 562, 903, 2582
PleI	GAGTC	6 cut(s)	46, 139, 1025, 1610, 1664, 2590
PmaCI	CACGTG	1 cut(s)	2327
PmlI	CACGTG	1 cut(s)	2327
PpsI	GAGTC	6 cut(s)	46, 139, 1025, 1610, 1664, 2590
Ppu21I	YACGTR	2 cut(s)	1012, 2327
PscI	ACATGT	1 cut(s)	1360
PshBI	ATTAAT	1 cut(s)	2492
PsiI	TTATAA	2 cut(s)	1926, 2469
Psp124BI	GAGCTC	2 cut(s)	1395, 2511
Psp6I	CCWGG	7 cut(s)	86, 546, 737, 868, 1021, 1256, 2208
PspCI	CACGTG	1 cut(s)	2327
PspFI	CCCAGC	3 cut(s)	631, 727, 2681
PspGI	CCWGG	7 cut(s)	86, 546, 737, 868, 1021, 1256, 2208
PspPI	GGNCC	4 cut(s)	1581, 1635, 1689, 2905
PstNI	CAGNNNCTG	2 cut(s)	560, 1348
PsuI	RGATCY	5 cut(s)	196, 1121, 1983, 2098, 2798
PsyI	GACNNNGTC	1 cut(s)	2045
RsaI	GTAC	8 cut(s)	656, 1014, 1423, 2273, 2367, 2460, 2527, 2777
RsaNI	GTAC	8 cut(s)	655, 1013, 1422, 2272, 2366, 2459, 2526, 2776
RseI	CAYNNNNRTG	1 cut(s)	2985
SacI	GAGCTC	2 cut(s)	1395, 2511
SatI	GCNGC	5 cut(s)	157, 226, 561, 902, 2581
Sau96I	GGNCC	4 cut(s)	1581, 1635, 1689, 2905
ScaI	AGTACT	1 cut(s)	2527
SchI	GAGTC	6 cut(s)	47, 139, 1025, 1610, 1664, 2590
ScrFI	CCNGG	8 cut(s)	88, 548, 739, 870, 1023, 1258, 2210, 2533
SduI	GDGCHC	3 cut(s)	966, 1395, 2511
SfaNI	GCATC	6 cut(s)	232, 346, 547, 2159, 2182, 2592
SfcI	CTRYAG	1 cut(s)	443
SinI	GGWCC	1 cut(s)	2905
SmiMI	CAYNNNNRTG	1 cut(s)	2985
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
SnaBI	TACGTA	1 cut(s)	1012
SseBI	AGGCCT	2 cut(s)	326, 1256
SsiI	CCGC	7 cut(s)	5, 106, 157, 901, 1987, 2087, 2405
SspI	AATATT	3 cut(s)	1264, 2014, 2251
SspMI	CTAG	3 cut(s)	485, 1823, 2427
SstI	GAGCTC	2 cut(s)	1395, 2511
StuI	AGGCCT	2 cut(s)	326, 1256
StyD4I	CCNGG	8 cut(s)	86, 546, 737, 868, 1021, 1256, 2208, 2531
StyI	CCWWGG	1 cut(s)	2802
TaaI	ACNGT	6 cut(s)	538, 1279, 1300, 2082, 2413, 3027
TaiI	ACGT	8 cut(s)	128, 189, 207, 1014, 1111, 1137, 2329, 2363
TaqI	TCGA	4 cut(s)	65, 75, 1357, 3018
TaqII	GACCGA	1 cut(s)	572
TatI	WGTACW	2 cut(s)	2365, 2525
TauI	GCSGC	2 cut(s)	159, 904
TfiI	GAWTC	4 cut(s)	136, 608, 1467, 1562
TscAI	CASTG	6 cut(s)	1041, 1173, 1552, 2482, 2551, 2971
TseFI	GTSAC	3 cut(s)	178, 1966, 2966
TseI	GCWGC	3 cut(s)	225, 560, 2580
Tsp45I	GTSAC	3 cut(s)	178, 1966, 2966
TspGWI	ACGGA	5 cut(s)	241, 341, 822, 912, 1522
TspRI	CASTG	6 cut(s)	1041, 1173, 1552, 2482, 2551, 2971
Tth111I	GACNNNGTC	1 cut(s)	2045
VpaK11BI	GGWCC	1 cut(s)	2905
VspI	ATTAAT	1 cut(s)	2492
XagI	CCTNNNNNAGG	1 cut(s)	2430
XapI	RAATTY	5 cut(s)	130, 308, 437, 776, 2747
XceI	RCATGY	3 cut(s)	410, 978, 1364
XspI	CTAG	3 cut(s)	485, 1823, 2427
ZraI	GACGTC	1 cut(s)	205
ZrmI	AGTACT	1 cut(s)	2527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.