Rmu_sc0003649.1_g000029

Prohibitin-3

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003649.1
Physical Location & Seq
Forward (+)
144381 .. 145220
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003649.1_g000029.1.cds

Sequence Viewer

Length: 840 bp
atgggaagcaaccaagccgccgtgtccttcctcaccaacctcgcacgcgccgccttcggcctcggcgccggcgctaccatcgtcaactcggccctgtacaccgtcgacggcggccagcgcgccgtcctcttcgaccgtttccgcggcgtcatcgacgagaccgtcggcgaaggcacccacttcctggtcccgtggctgcagaagccctacatcttcgacatcaggacccgcccccacaccttctcctccatctccggcaccaaggatcttcagatggtcaacctcactctgagggttctctcccgcccggaggtcagtcgcctccctcagatcttcaaaaccctggggctcgagtacgacgagaaggtcctcccgtcgatcgggaacgaggttctcaaggcggtggtggcgcagttcaacgccgatcagctcctgacggagcggccgcacgtgtcggcgctggtgcgggagagcttgatccgcagggctaaggatttcaacattgagctggacgacgtggccatcacgcacttgtcgtacggggcggagttctcacgcgccgtcgagcagaagcaggtggcgcagcaggaggcggagcggtccaagtttgttgtggcgaaggcggagcaggagaggagggctgctattatcagggctcagggtgagagtgaatctgctaagctgatttcggaggcgactgccgctgccggaagtgacttgattgaactccgaaggattgaagctagtagagagattgccgccacgctcgccaagtcgcccaatgtcaactaccaatttgccaatgatcaaaaacagaaaaaaagatcagagaatttctag

Protein Analysis

279

Amino Acids

30.88

Weight (kDa)

8.75

Isoelectric Point (pI)

45.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011982)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 565
AasI GACNNNNNNGTC 2 cut(s) 161, 365
Acc36I ACCTGC 1 cut(s) 565
AccB1I GGYRCC 3 cut(s) 65, 173, 257
AccB7I CCANNNNNTGG 1 cut(s) 184
AccBSI CCGCTC 2 cut(s) 442, 598
AccI GTMKAC 1 cut(s) 105
AccII CGCG 4 cut(s) 48, 120, 144, 558
AclWI GGATC 2 cut(s) 273, 472
AcoI YGGCCR 3 cut(s) 112, 443, 519
AcsI RAATTY 1 cut(s) 832
AcuI CTGAAG 1 cut(s) 254
AcvI CACGTG 1 cut(s) 451
AcyI GRCGYC 2 cut(s) 66, 147
AfaI GTAC 3 cut(s) 98, 356, 539
AfiI CCNNNNNNNGG 3 cut(s) 184, 310, 380
AflIII ACRYGT 1 cut(s) 450
AgsI TTSAA 5 cut(s) 337, 418, 499, 725, 740
AjiI CACGTC 1 cut(s) 517
AjnI CCWGG 2 cut(s) 183, 342
AluBI AGCT 5 cut(s) 430, 474, 508, 682, 743
AluI AGCT 5 cut(s) 430, 474, 508, 682, 743
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 2 cut(s) 273, 472
AlwNI CAGNNNCTG 1 cut(s) 433
Ama87I CYCGRG 1 cut(s) 350
AoxI GGCC 5 cut(s) 58, 90, 112, 443, 519
ApeKI GCWGC 4 cut(s) 196, 583, 641, 704
ApoI RAATTY 1 cut(s) 832
AspLEI GCGC 9 cut(s) 50, 68, 74, 120, 122, 412, 460, 560, 583
AspS9I GGNCC 5 cut(s) 91, 187, 225, 367, 600
AsuC2I CCSGG 1 cut(s) 308
AsuHPI GGTGA 2 cut(s) 25, 674
AvaI CYCGRG 1 cut(s) 350
AvaII GGWCC 4 cut(s) 187, 225, 367, 600
BalI TGGCCA 1 cut(s) 521
BanI GGYRCC 3 cut(s) 65, 173, 257
BanII GRGCYC 2 cut(s) 351, 658
BbrPI CACGTG 1 cut(s) 451
BbvI GCAGC 4 cut(s) 183, 595, 628, 691
BccI CCATC 4 cut(s) 86, 257, 268, 530
BceAI ACGGC 4 cut(s) 5, 107, 124, 545
BciT130I CCWGG 2 cut(s) 185, 344
BclI TGATCA 1 cut(s) 805
BcnI CCSGG 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 2 cut(s) 744, 838
BfmI CTRYAG 1 cut(s) 197
BfoI RGCGCY 3 cut(s) 69, 75, 461
BfuAI ACCTGC 1 cut(s) 565
BglII AGATCT 1 cut(s) 330
BlpI GCTNAGC 1 cut(s) 678
Bme1390I CCNGG 3 cut(s) 185, 308, 344
Bme18I GGWCC 4 cut(s) 187, 225, 367, 600
BmeT110I CYCGRG 1 cut(s) 350
BmgBI CACGTC 1 cut(s) 517
BmgT120I GGNCC 5 cut(s) 91, 187, 225, 367, 600
BmiI GGNNCC 5 cut(s) 67, 175, 189, 227, 259
BmrFI CCNGG 3 cut(s) 185, 308, 344
Bpu10I CCTNAGC 2 cut(s) 489, 657
Bpu1102I GCTNAGC 1 cut(s) 678
BpuEI CTTGAG 1 cut(s) 380
BpuMI CCSGG 1 cut(s) 308
BsaAI YACGTR 1 cut(s) 451
BsaHI GRCGYC 2 cut(s) 66, 147
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 6 cut(s) 61, 142, 191, 261, 342, 343
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 310, 380
Bse118I RCCGGY 1 cut(s) 68
BseBI CCWGG 2 cut(s) 185, 344
BseDI CCNNGG 6 cut(s) 61, 142, 191, 261, 342, 343
BseLI CCNNNNNNNGG 3 cut(s) 184, 310, 380
BseMII CTCAG 3 cut(s) 281, 341, 671
BsePI GCGCGC 1 cut(s) 118
BseRI GAGGAG 2 cut(s) 235, 649
BseX3I CGGCCG 1 cut(s) 443
BseXI GCAGC 4 cut(s) 183, 595, 628, 691
Bsh1236I CGCG 4 cut(s) 48, 120, 144, 558
Bsh1285I CGRYCG 3 cut(s) 136, 381, 446
BshFI GGCC 5 cut(s) 60, 92, 114, 445, 521
BshNI GGYRCC 3 cut(s) 65, 173, 257
BsiEI CGRYCG 3 cut(s) 136, 381, 446
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 4 cut(s) 69, 255, 308, 708
BsiWI CGTACG 1 cut(s) 537
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 3 cut(s) 184, 310, 380
BsmAI GTCTC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 5 cut(s) 60, 92, 114, 445, 521
Bso31I GGTCTC 1 cut(s) 152
BsoBI CYCGRG 1 cut(s) 350
Bsp1286I GDGCHC 2 cut(s) 351, 658
Bsp1407I TGTACA 1 cut(s) 96
Bsp143I GATC 7 cut(s) 265, 330, 378, 424, 477, 805, 824
Bsp1720I GCTNAGC 1 cut(s) 678
BspANI GGCC 5 cut(s) 60, 92, 114, 445, 521
BspCNI CTCAG 3 cut(s) 282, 340, 670
BspFNI CGCG 4 cut(s) 48, 120, 144, 558
BspLI GGNNCC 5 cut(s) 67, 175, 189, 227, 259
BspMAI CTGCAG 1 cut(s) 201
BspMI ACCTGC 1 cut(s) 565
BspPI GGATC 2 cut(s) 273, 472
BspT107I GGYRCC 3 cut(s) 65, 173, 257
BspTNI GGTCTC 1 cut(s) 152
BsrBI CCGCTC 2 cut(s) 442, 598
BsrFI RCCGGY 1 cut(s) 68
BsrGI TGTACA 1 cut(s) 96
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 6 cut(s) 61, 142, 191, 261, 342, 343
BssHII GCGCGC 1 cut(s) 118
BssMI GATC 7 cut(s) 265, 330, 378, 424, 477, 805, 824
BssNI GRCGYC 2 cut(s) 66, 147
BssT1I CCWWGG 1 cut(s) 261
Bst2UI CCWGG 2 cut(s) 185, 344
Bst4CI ACNGT 3 cut(s) 103, 137, 163
Bst6I CTCTTC 1 cut(s) 134
BstACI GRCGYC 2 cut(s) 66, 147
BstAUI TGTACA 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 451
BstC8I GCNNGC 5 cut(s) 46, 70, 116, 120, 768
BstDEI CTNAG 5 cut(s) 290, 327, 489, 657, 678
BstDSI CCRYGG 2 cut(s) 142, 191
BstFNI CGCG 4 cut(s) 48, 120, 144, 558
BstH2I RGCGCY 3 cut(s) 69, 75, 461
BstHHI GCGC 9 cut(s) 50, 68, 74, 120, 122, 412, 460, 560, 583
BstKTI GATC 7 cut(s) 268, 333, 381, 427, 480, 808, 827
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 7 cut(s) 265, 330, 378, 424, 477, 805, 824
BstMCI CGRYCG 3 cut(s) 136, 381, 446
BstMWI GCNNNNNNNGC 8 cut(s) 50, 117, 202, 407, 480, 580, 701, 767
BstNI CCWGG 2 cut(s) 185, 344
BstSCI CCNGG 3 cut(s) 183, 306, 342
BstSFI CTRYAG 1 cut(s) 197
BstUI CGCG 4 cut(s) 48, 120, 144, 558
BstV1I GCAGC 4 cut(s) 183, 595, 628, 691
BstX2I RGATCY 2 cut(s) 265, 330
BstYI RGATCY 2 cut(s) 265, 330
BstZI CGGCCG 1 cut(s) 443
BsuRI GGCC 5 cut(s) 60, 92, 114, 445, 521
BtgI CCRYGG 2 cut(s) 142, 191
BtrI CACGTC 1 cut(s) 517
BveI ACCTGC 1 cut(s) 565
Cac8I GCNNGC 5 cut(s) 46, 70, 116, 120, 768
CaiI CAGNNNCTG 1 cut(s) 433
CciNI GCGGCCGC 1 cut(s) 443
CfoI GCGC 9 cut(s) 50, 68, 74, 120, 122, 412, 460, 560, 583
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 5 cut(s) 91, 187, 225, 367, 600
Cfr42I CCGCGG 1 cut(s) 145
CseI GACGC 1 cut(s) 136
Csp6I GTAC 3 cut(s) 97, 355, 538
CviQI GTAC 3 cut(s) 97, 355, 538
DdeI CTNAG 5 cut(s) 290, 327, 489, 657, 678
DinI GGCGCC 1 cut(s) 67
DpnI GATC 7 cut(s) 267, 332, 380, 426, 479, 807, 826
DpnII GATC 7 cut(s) 265, 330, 378, 424, 477, 805, 824
DrdI GACNNNNNNGTC 2 cut(s) 161, 365
DseDI GACNNNNNNGTC 2 cut(s) 161, 365
EaeI YGGCCR 3 cut(s) 112, 443, 519
EagI CGGCCG 1 cut(s) 443
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
EciI GGCGGA 3 cut(s) 560, 608, 638
EclXI CGGCCG 1 cut(s) 443
Eco130I CCWWGG 1 cut(s) 261
Eco24I GRGCYC 2 cut(s) 351, 658
Eco31I GGTCTC 1 cut(s) 152
Eco47I GGWCC 4 cut(s) 187, 225, 367, 600
Eco52I CGGCCG 1 cut(s) 443
Eco57I CTGAAG 1 cut(s) 254
Eco72I CACGTG 1 cut(s) 451
Eco88I CYCGRG 1 cut(s) 350
EcoO109I RGGNCCY 2 cut(s) 225, 367
EcoRII CCWGG 2 cut(s) 183, 342
EcoT14I CCWWGG 1 cut(s) 261
EcoT38I GRGCYC 2 cut(s) 351, 658
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 261
FaqI GGGAC 1 cut(s) 173
FauI CCCGC 3 cut(s) 236, 311, 459
FbaI TGATCA 1 cut(s) 805
FblI GTMKAC 1 cut(s) 105
FriOI GRGCYC 2 cut(s) 351, 658
FspBI CTAG 2 cut(s) 744, 838
GlaI GCGC 9 cut(s) 49, 67, 73, 119, 121, 411, 459, 559, 582
HaeII RGCGCY 3 cut(s) 69, 75, 461
HaeIII GGCC 5 cut(s) 60, 92, 114, 445, 521
HapII CCGG 4 cut(s) 69, 255, 308, 708
HgaI GACGC 1 cut(s) 136
HhaI GCGC 9 cut(s) 50, 68, 74, 120, 122, 412, 460, 560, 583
Hin1I GRCGYC 2 cut(s) 66, 147
Hin6I GCGC 9 cut(s) 48, 66, 72, 118, 120, 410, 458, 558, 581
HinP1I GCGC 9 cut(s) 48, 66, 72, 118, 120, 410, 458, 558, 581
HincII GTYRAC 4 cut(s) 85, 106, 280, 787
HindII GTYRAC 4 cut(s) 85, 106, 280, 787
HinfI GANTC 1 cut(s) 671
HpaII CCGG 4 cut(s) 69, 255, 308, 708
HphI GGTGA 2 cut(s) 25, 674
Hpy166II GTNNAC 5 cut(s) 85, 99, 106, 280, 787
Hpy188I TCNGA 6 cut(s) 273, 291, 330, 691, 731, 829
Hpy188III TCNNGA 3 cut(s) 223, 382, 433
Hpy8I GTNNAC 5 cut(s) 85, 99, 106, 280, 787
Hpy99I CGWCG 8 cut(s) 107, 110, 158, 167, 362, 379, 518, 566
HpyAV CCTTC 7 cut(s) 37, 64, 164, 250, 358, 613, 726
HpyCH4III ACNGT 3 cut(s) 103, 137, 163
HpyCH4IV ACGT 2 cut(s) 450, 516
HpyCH4V TGCA 1 cut(s) 199
HpyF10VI GCNNNNNNNGC 8 cut(s) 50, 117, 202, 407, 480, 580, 701, 767
HpyF3I CTNAG 5 cut(s) 290, 327, 489, 657, 678
HpySE526I ACGT 2 cut(s) 450, 516
Hsp92I GRCGYC 2 cut(s) 66, 147
HspAI GCGC 9 cut(s) 48, 66, 72, 118, 120, 410, 458, 558, 581
KasI GGCGCC 1 cut(s) 65
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
Ksp22I TGATCA 1 cut(s) 805
KspI CCGCGG 1 cut(s) 145
Kzo9I GATC 7 cut(s) 265, 330, 378, 424, 477, 805, 824
LmnI GCTCC 4 cut(s) 435, 439, 595, 625
Lsp1109I GCAGC 4 cut(s) 183, 595, 628, 691
MaeI CTAG 2 cut(s) 744, 838
MaeII ACGT 2 cut(s) 450, 516
MaeIII GTNAC 1 cut(s) 713
MalI GATC 7 cut(s) 267, 332, 380, 426, 479, 807, 826
MbiI CCGCTC 2 cut(s) 442, 598
MboI GATC 7 cut(s) 265, 330, 378, 424, 477, 805, 824
MboII GAAGA 4 cut(s) 121, 205, 260, 325
MflI RGATCY 2 cut(s) 265, 330
MhlI GDGCHC 2 cut(s) 351, 658
MlsI TGGCCA 1 cut(s) 521
MluCI AATT 2 cut(s) 794, 832
MluNI TGGCCA 1 cut(s) 521
Mly113I GGCGCC 1 cut(s) 66
Mox20I TGGCCA 1 cut(s) 521
MreI CGCCGGCG 1 cut(s) 68
MroNI GCCGGC 1 cut(s) 68
MscI TGGCCA 1 cut(s) 521
Msp20I TGGCCA 1 cut(s) 521
MspA1I CMGCKG 2 cut(s) 144, 704
MspI CCGG 4 cut(s) 69, 255, 308, 708
MspR9I CCNGG 3 cut(s) 185, 308, 344
MvaI CCWGG 2 cut(s) 185, 344
MvnI CGCG 4 cut(s) 48, 120, 144, 558
MwoI GCNNNNNNNGC 8 cut(s) 50, 117, 202, 407, 480, 580, 701, 767
NaeI GCCGGC 1 cut(s) 70
NarI GGCGCC 1 cut(s) 66
NciI CCSGG 1 cut(s) 308
NdeII GATC 7 cut(s) 265, 330, 378, 424, 477, 805, 824
NgoMIV GCCGGC 1 cut(s) 68
NlaIV GGNNCC 5 cut(s) 67, 175, 189, 227, 259
NmeAIII GCCGAG 2 cut(s) 42, 68
NmuCI GTSAC 1 cut(s) 713
NotI GCGGCCGC 1 cut(s) 443
PaeR7I CTCGAG 1 cut(s) 350
PaqCI CACCTGC 1 cut(s) 565
PasI CCCWGGG 1 cut(s) 343
PauI GCGCGC 1 cut(s) 118
PcsI WCGNNNNNNNCGW 3 cut(s) 159, 357, 533
PdiI GCCGGC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 671
Pfl23II CGTACG 1 cut(s) 537
PflMI CCANNNNNTGG 1 cut(s) 184
Ple19I CGATCG 1 cut(s) 381
PluTI GGCGCC 1 cut(s) 69
PmaCI CACGTG 1 cut(s) 451
PmlI CACGTG 1 cut(s) 451
Ppu21I YACGTR 1 cut(s) 451
PpuMI RGGWCCY 2 cut(s) 225, 367
Psp5II RGGWCCY 2 cut(s) 225, 367
Psp6I CCWGG 2 cut(s) 183, 342
PspCI CACGTG 1 cut(s) 451
PspGI CCWGG 2 cut(s) 183, 342
PspLI CGTACG 1 cut(s) 537
PspN4I GGNNCC 5 cut(s) 67, 175, 189, 227, 259
PspPI GGNCC 5 cut(s) 91, 187, 225, 367, 600
PspPPI RGGWCCY 2 cut(s) 225, 367
PspXI VCTCGAGB 1 cut(s) 350
PstI CTGCAG 1 cut(s) 201
PstNI CAGNNNCTG 1 cut(s) 433
PsuI RGATCY 2 cut(s) 265, 330
PteI GCGCGC 1 cut(s) 118
PvuI CGATCG 1 cut(s) 381
RsaI GTAC 3 cut(s) 98, 356, 539
RsaNI GTAC 3 cut(s) 97, 355, 538
SacII CCGCGG 1 cut(s) 145
SalI GTCGAC 1 cut(s) 104
Sau3AI GATC 7 cut(s) 265, 330, 378, 424, 477, 805, 824
Sau96I GGNCC 5 cut(s) 91, 187, 225, 367, 600
ScrFI CCNGG 3 cut(s) 185, 308, 344
SduI GDGCHC 2 cut(s) 351, 658
SfcI CTRYAG 1 cut(s) 197
SfoI GGCGCC 1 cut(s) 67
Sfr274I CTCGAG 1 cut(s) 350
Sfr303I CCGCGG 1 cut(s) 145
SgrAI CRCCGGYG 1 cut(s) 68
SgrBI CCGCGG 1 cut(s) 145
SgrDI CGTCGACG 1 cut(s) 104
SinI GGWCC 4 cut(s) 187, 225, 367, 600
SlaI CTCGAG 1 cut(s) 350
SmlI CTYRAG 2 cut(s) 350, 395
SmoI CTYRAG 2 cut(s) 350, 395
Sse9I AATT 2 cut(s) 794, 832
SspDI GGCGCC 1 cut(s) 65
SspMI CTAG 2 cut(s) 744, 838
StyD4I CCNGG 3 cut(s) 183, 306, 342
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 3 cut(s) 103, 137, 163
TaiI ACGT 2 cut(s) 453, 519
TaqI TCGA 7 cut(s) 105, 132, 153, 216, 351, 377, 564
TasI AATT 2 cut(s) 794, 832
TatI WGTACW 1 cut(s) 96
TauI GCSGC 8 cut(s) 20, 53, 114, 147, 445, 448, 704, 761
TfiI GAWTC 1 cut(s) 671
TseFI GTSAC 1 cut(s) 713
TseI GCWGC 4 cut(s) 196, 583, 641, 704
Tsp45I GTSAC 1 cut(s) 713
TspGWI ACGGA 1 cut(s) 452
Van91I CCANNNNNTGG 1 cut(s) 184
VpaK11BI GGWCC 4 cut(s) 187, 225, 367, 600
XapI RAATTY 1 cut(s) 832
XcmI CCANNNNNNNNNTGG 1 cut(s) 610
XhoI CTCGAG 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 105
XspI CTAG 2 cut(s) 744, 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.