Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011982

Physical Location & Seq

Genomic Coordinates Reverse (-)

16314850 .. 16317291

Gene Structure 2442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G40770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGGAAGCCAACAAGCGGCTGTTTCGTTCCTTTCCAATTTGGCGAAGGCTGCTTTCGGTCTTGGAACGGCGGCGACGGTGCTGAATACATCGCTTTTCACCGTTGACGGCGGAGAAAGAGCTGTTATCTTCGATCGATTCAGGGGAGTGATGGATCAGACTGTGGGTGAAGGGACTCATTTCTTGATCCCGATTCTTCAGAGGCCTCACATCTTCGATATCCGCACGAAGCCTCACACGTTCTCTTCAATCTCTGGTACTAAGGATCTCCAGATGGTTAATCTCACTCTTCGTGTTCTCTCTCGTCCTGAGGTGTCGCGTCTCCCGTACATCTTCCAAACTTTGGGTCTAGAGTATGACGAGAAGGTTCTTCCTTCGATTGGAAATGAGGTTTTGAAAGCTGTGGTTGCACAGTTCAACGCTGACCAGCTTCTCACTGAGCGTCCTCACGTCTCAGCACTTGTTCGGGAGTCACTAATCACCCGTGCGAAGGACTTCAACATTGTGCTTGATGATGTAGCTATCACGCATTTGTCCTATGGTGTGGAGTTTTCAAGGGCTGTTGAGCAGAAACAAGTGGCTCAGCAAGAGGCAGAGAGGTCTAAGTTTGTTGTGATGAAGGCTGATCAAGAGAGGAGAGCTGCGGTTATAAGAGCTGAAGGTGAAAGTGAAGCTGCTCAGTTGATTTCTGATGCTACGGCTAAAGCTGGTATGGGACTTATCGAGCTTAGGAGGATTGAAGCTTCAAGGGAGATTGCGTCTACACTTGCTAGGTCTCCTAATGTGGCCTACTTACCCGGTGGCCAGAGCATGCTCTTTGCCCTGAACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0016020 GO:0016043 GO:0019866 GO:0022622 GO:0030312 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051302 GO:0051782 GO:0065007 GO:0070013 GO:0070469 GO:0071731 GO:0071840 GO:0071944 GO:0090696 GO:0097366 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:0099402 GO:1901698 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

277

Amino Acids

30.4

Weight (kDa)

6.99

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	34 - 221	3.4e-26	SPFH domain / Band 7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27280 AT3G27280 AT5G40770
fragaria_vesca	FvH4_6g52780
malus_domestica	MD09G1016800.v1.1 MD17G1017200.v1.1
prunus_persica	Prupe.3G300700_v2.0.a1 Prupe.3G300700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0174411
rosa_laevigata	RLG00000022263
rosa_multiflora	Rmu_co8273923.1_g000001 Rmu_sc0003649.1_g000029
rosa_roxburghii	Rroxscaffold_2G00078240
rosa_rugosa	Rorug02G0576500
rosa_samantha	Rh2AG657700 Rh2BG668800 Rh2CG631700 Rh2DG682300
rosa_wichuraiana	Rw2G053870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	650
AccB7I	CCANNNNNTGG	1 cut(s)	343
AccI	GTMKAC	1 cut(s)	761
AccII	CGCG	1 cut(s)	319
AciI	CCGC	5 cut(s)	17, 71, 111, 223, 644
AclWI	GGATC	3 cut(s)	162, 181, 273
AcoI	YGGCCR	1 cut(s)	802
AcuI	CTGAAG	2 cut(s)	182, 678
AfaI	GTAC	2 cut(s)	259, 329
AfiI	CCNNNNNNNGG	4 cut(s)	16, 343, 380, 490
AflIII	ACRYGT	1 cut(s)	237
AgsI	TTSAA	7 cut(s)	249, 397, 418, 499, 555, 740, 747
AjiI	CACGTC	1 cut(s)	451
Alw26I	GTCTC	3 cut(s)	326, 457, 780
AlwI	GGATC	3 cut(s)	162, 181, 273
AoxI	GGCC	3 cut(s)	203, 786, 802
ApeKI	GCWGC	3 cut(s)	50, 641, 674
ArsI	GACNNNNNNTTYG	2 cut(s)	331, 363
Asp700I	GAANNNNTTC	1 cut(s)	494
AsuC2I	CCSGG	1 cut(s)	798
AsuHPI	GGTGA	4 cut(s)	91, 179, 472, 674
AxyI	CCTNAGG	1 cut(s)	309
BalI	TGGCCA	1 cut(s)	804
BbvI	GCAGC	3 cut(s)	37, 628, 661
BccI	CCATC	2 cut(s)	145, 268
BceAI	ACGGC	3 cut(s)	84, 124, 714
BclI	TGATCA	1 cut(s)	625
BcnI	CCSGG	1 cut(s)	798
BcoDI	GTCTC	3 cut(s)	326, 457, 780
BfaI	CTAG	2 cut(s)	350, 771
BisI	GCNGC	5 cut(s)	18, 51, 72, 642, 675
BlpI	GCTNAGC	1 cut(s)	582
BlsI	GCNGC	5 cut(s)	19, 52, 73, 643, 676
Bme1390I	CCNGG	1 cut(s)	798
BmgBI	CACGTC	1 cut(s)	451
BmrFI	CCNGG	1 cut(s)	798
BmsI	GCATC	1 cut(s)	682
BpmI	CTGGAG	1 cut(s)	254
Bpu10I	CCTNAGC	1 cut(s)	728
Bpu1102I	GCTNAGC	1 cut(s)	582
BpuMI	CCSGG	1 cut(s)	798
Bsa29I	ATCGAT	1 cut(s)	136
BsaI	GGTCTC	1 cut(s)	780
BsaXI	ACNNNNNCTCC	2 cut(s)	743, 773
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 343, 380, 490
Bse21I	CCTNAGG	1 cut(s)	309
BseCI	ATCGAT	1 cut(s)	136
BseLI	CCNNNNNNNGG	4 cut(s)	16, 343, 380, 490
BseMII	CTCAG	5 cut(s)	300, 429, 468, 596, 692
BseRI	GAGGAG	1 cut(s)	649
BseXI	GCAGC	3 cut(s)	37, 628, 661
Bsh1236I	CGCG	1 cut(s)	319
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	3 cut(s)	205, 788, 804
BshVI	ATCGAT	1 cut(s)	136
BsiEI	CGRYCG	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	798
BslFI	GGGAC	2 cut(s)	187, 729
BslI	CCNNNNNNNGG	4 cut(s)	16, 343, 380, 490
BsmAI	GTCTC	3 cut(s)	326, 457, 780
BsmBI	CGTCTC	2 cut(s)	326, 457
BsmFI	GGGAC	2 cut(s)	187, 729
BsnI	GGCC	3 cut(s)	205, 788, 804
Bso31I	GGTCTC	1 cut(s)	780
Bsp143I	GATC	5 cut(s)	133, 154, 186, 265, 625
Bsp1720I	GCTNAGC	1 cut(s)	582
BspACI	CCGC	5 cut(s)	17, 71, 111, 223, 644
BspANI	GGCC	3 cut(s)	205, 788, 804
BspCNI	CTCAG	5 cut(s)	301, 430, 467, 595, 691
BspDI	ATCGAT	1 cut(s)	136
BspFNI	CGCG	1 cut(s)	319
BspPI	GGATC	3 cut(s)	162, 181, 273
BspTNI	GGTCTC	1 cut(s)	780
BssMI	GATC	5 cut(s)	133, 154, 186, 265, 625
Bst4CI	ACNGT	5 cut(s)	79, 103, 163, 414, 830
Bst6I	CTCTTC	2 cut(s)	250, 294
BstC8I	GCNNGC	1 cut(s)	812
BstDEI	CTNAG	8 cut(s)	261, 309, 438, 454, 582, 603, 678, 728
BstFNI	CGCG	1 cut(s)	319
BstKTI	GATC	5 cut(s)	136, 157, 189, 268, 628
BstMAI	GTCTC	3 cut(s)	326, 457, 780
BstMBI	GATC	5 cut(s)	133, 154, 186, 265, 625
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 407
BstNSI	RCATGY	1 cut(s)	814
BstSCI	CCNGG	1 cut(s)	796
BstUI	CGCG	1 cut(s)	319
BstV1I	GCAGC	3 cut(s)	37, 628, 661
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
Bsu15I	ATCGAT	1 cut(s)	136
Bsu36I	CCTNAGG	1 cut(s)	309
BsuRI	GGCC	3 cut(s)	205, 788, 804
BsuTUI	ATCGAT	1 cut(s)	136
BtgZI	GCGATG	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	451
BtsIMutI	CAGTG	1 cut(s)	435
Cac8I	GCNNGC	1 cut(s)	812
ClaI	ATCGAT	1 cut(s)	136
CseI	GACGC	3 cut(s)	308, 431, 747
Csp6I	GTAC	2 cut(s)	258, 328
CviAII	CATG	1 cut(s)	811
CviQI	GTAC	2 cut(s)	258, 328
DdeI	CTNAG	8 cut(s)	261, 309, 438, 454, 582, 603, 678, 728
DpnI	GATC	5 cut(s)	135, 156, 188, 267, 627
DpnII	GATC	5 cut(s)	133, 154, 186, 265, 625
EaeI	YGGCCR	1 cut(s)	802
Eam1104I	CTCTTC	2 cut(s)	250, 294
EarI	CTCTTC	2 cut(s)	250, 294
EciI	GGCGGA	1 cut(s)	126
Eco147I	AGGCCT	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	780
Eco32I	GATATC	1 cut(s)	220
Eco57I	CTGAAG	2 cut(s)	182, 678
Eco81I	CCTNAGG	1 cut(s)	309
EcoRV	GATATC	1 cut(s)	220
Esp3I	CGTCTC	2 cut(s)	326, 457
FaeI	CATG	1 cut(s)	814
FaiI	YATR	5 cut(s)	357, 540, 650, 713, 812
FaqI	GGGAC	2 cut(s)	187, 729
FatI	CATG	1 cut(s)	810
FbaI	TGATCA	1 cut(s)	625
FblI	GTMKAC	1 cut(s)	761
Fnu4HI	GCNGC	5 cut(s)	18, 51, 72, 642, 675
Fsp4HI	GCNGC	5 cut(s)	18, 51, 72, 642, 675
FspBI	CTAG	2 cut(s)	350, 771
GluI	GCNGC	5 cut(s)	18, 51, 72, 642, 675
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	3 cut(s)	205, 788, 804
HapII	CCGG	1 cut(s)	798
HgaI	GACGC	3 cut(s)	308, 431, 747
Hin1II	CATG	1 cut(s)	814
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	741
HinfI	GANTC	4 cut(s)	138, 175, 193, 470
HpaII	CCGG	1 cut(s)	798
HphI	GGTGA	4 cut(s)	91, 179, 472, 674
Hpy166II	GTNNAC	2 cut(s)	106, 762
Hpy188I	TCNGA	3 cut(s)	159, 201, 691
Hpy188III	TCNNGA	7 cut(s)	184, 190, 271, 308, 350, 467, 629
Hpy8I	GTNNAC	2 cut(s)	106, 762
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	7 cut(s)	40, 164, 358, 384, 484, 613, 653
HpyCH4III	ACNGT	5 cut(s)	79, 103, 163, 414, 830
HpyCH4IV	ACGT	2 cut(s)	239, 450
HpyCH4V	TGCA	1 cut(s)	410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 407
HpyF3I	CTNAG	8 cut(s)	261, 309, 438, 454, 582, 603, 678, 728
HpySE526I	ACGT	2 cut(s)	239, 450
Hsp92II	CATG	1 cut(s)	814
Ksp22I	TGATCA	1 cut(s)	625
Kzo9I	GATC	5 cut(s)	133, 154, 186, 265, 625
LpnPI	CCDG	8 cut(s)	127, 240, 284, 321, 440, 693, 811, 818
Lsp1109I	GCAGC	3 cut(s)	37, 628, 661
LweI	GCATC	1 cut(s)	682
MaeI	CTAG	2 cut(s)	350, 771
MaeII	ACGT	2 cut(s)	239, 450
MaeIII	GTNAC	1 cut(s)	471
MalI	GATC	5 cut(s)	135, 156, 188, 267, 627
MboI	GATC	5 cut(s)	133, 154, 186, 265, 625
MboII	GAAGA	7 cut(s)	121, 188, 205, 237, 281, 325, 362
MflI	RGATCY	1 cut(s)	265
MlsI	TGGCCA	1 cut(s)	804
MluCI	AATT	1 cut(s)	37
MluNI	TGGCCA	1 cut(s)	804
MlyI	GAGTC	2 cut(s)	169, 479
Mox20I	TGGCCA	1 cut(s)	804
MroXI	GAANNNNTTC	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	804
MseI	TTAA	1 cut(s)	279
Msp20I	TGGCCA	1 cut(s)	804
MspI	CCGG	1 cut(s)	798
MspR9I	CCNGG	1 cut(s)	798
MvnI	CGCG	1 cut(s)	319
MwoI	GCNNNNNNNGC	2 cut(s)	50, 407
NciI	CCSGG	1 cut(s)	798
NdeII	GATC	5 cut(s)	133, 154, 186, 265, 625
NlaIII	CATG	1 cut(s)	814
NmuCI	GTSAC	1 cut(s)	471
NspI	RCATGY	1 cut(s)	814
PaeI	GCATGC	1 cut(s)	814
PceI	AGGCCT	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	323
PdmI	GAANNNNTTC	1 cut(s)	494
PfeI	GAWTC	2 cut(s)	138, 193
PflMI	CCANNNNNTGG	1 cut(s)	343
PkrI	GCNGC	5 cut(s)	19, 52, 73, 643, 676
Ple19I	CGATCG	1 cut(s)	136
PleI	GAGTC	2 cut(s)	169, 478
PpsI	GAGTC	2 cut(s)	169, 478
PsiI	TTATAA	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	265
PvuI	CGATCG	1 cut(s)	136
RsaI	GTAC	2 cut(s)	259, 329
RsaNI	GTAC	2 cut(s)	258, 328
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	5 cut(s)	18, 51, 72, 642, 675
Sau3AI	GATC	5 cut(s)	133, 154, 186, 265, 625
SchI	GAGTC	2 cut(s)	169, 479
ScrFI	CCNGG	1 cut(s)	798
SfaNI	GCATC	1 cut(s)	682
SphI	GCATGC	1 cut(s)	814
Sse9I	AATT	1 cut(s)	37
SseBI	AGGCCT	1 cut(s)	205
SsiI	CCGC	5 cut(s)	17, 71, 111, 223, 644
SspMI	CTAG	2 cut(s)	350, 771
StuI	AGGCCT	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	796
TaaI	ACNGT	5 cut(s)	79, 103, 163, 414, 830
TaiI	ACGT	2 cut(s)	242, 453
TaqI	TCGA	5 cut(s)	132, 136, 216, 377, 723
TaqII	GACCGA	1 cut(s)	47
TasI	AATT	1 cut(s)	37
TauI	GCSGC	2 cut(s)	20, 74
TfiI	GAWTC	2 cut(s)	138, 193
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	471
TseI	GCWGC	3 cut(s)	50, 641, 674
Tsp45I	GTSAC	1 cut(s)	471
TspDTI	ATGAA	1 cut(s)	632
TspRI	CASTG	1 cut(s)	442
Van91I	CCANNNNNTGG	1 cut(s)	343
XbaI	TCTAGA	1 cut(s)	349
XceI	RCATGY	1 cut(s)	814
XmiI	GTMKAC	1 cut(s)	761
XmnI	GAANNNNTTC	1 cut(s)	494
XspI	CTAG	2 cut(s)	350, 771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.