Rmu_co8273923.1_g000001

Prohibitin-3

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8273923.1
Physical Location & Seq
Reverse (-)
70 .. 816
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8273923.1_g000001.1.cds

Sequence Viewer

Length: 747 bp
ctgtacaccgtcgacggcggccagcgcgccgtcctcttcgaccgtttccgcggcgtcatcgacgagaccgtcggcgaaggcacccacttcctggtcccgtggctgcagaagccctacatcttcgacatcaggacccgcccccacaccttctcctccatctccggcaccaaggatcttcagatggtcaacctcactctgagggttctctcccgcccggaggtcagtcgcctccctcagatcttcaaaaccctggggctcgagtacgacgagaaggtcctcccgtcgatcgggaacgaggttctcaaggcggtggtggcgcagttcaacgccgatcagctcctgacggagcggccgcacgtgtcggcgctggtgcgggagagcttgatccgcagggctaaggatttcaacattgagctggacgacgtggccatcacgcacttgtcgtacggggcggagttctcacgcgccgtcgagcagaagcaggtggcgcagcaggaggcggagcggtccaagtttgttgtggcgaaggcggagcaggagaggagggctgctattatcagggctcagggtgagagtgaatctgctaagctgatttcggaggcgactgccgctgccggaagtgacttgattgaactccgaaggattgaagctagtagagagattgccgccacgctcgccaagtcgcccaatgtcaactacctgcctaaggggaaccaggtcctcttcggcctcggtggtggtcgttga

Protein Analysis

248

Amino Acids

27.56

Weight (kDa)

8.12

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011982)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 472
AasI GACNNNNNNGTC 2 cut(s) 68, 272
Acc36I ACCTGC 2 cut(s) 472, 708
AccB1I GGYRCC 2 cut(s) 80, 164
AccB7I CCANNNNNTGG 1 cut(s) 91
AccBSI CCGCTC 2 cut(s) 349, 505
AccI GTMKAC 1 cut(s) 12
AccII CGCG 3 cut(s) 27, 51, 465
AclWI GGATC 2 cut(s) 180, 379
AcoI YGGCCR 3 cut(s) 19, 350, 426
AcuI CTGAAG 1 cut(s) 161
AcvI CACGTG 1 cut(s) 358
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 3 cut(s) 5, 263, 446
AfiI CCNNNNNNNGG 4 cut(s) 91, 217, 287, 706
AflIII ACRYGT 1 cut(s) 357
AgsI TTSAA 5 cut(s) 244, 325, 406, 632, 647
AjiI CACGTC 1 cut(s) 424
AjnI CCWGG 3 cut(s) 90, 249, 714
AluBI AGCT 5 cut(s) 337, 381, 415, 589, 650
AluI AGCT 5 cut(s) 337, 381, 415, 589, 650
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 2 cut(s) 180, 379
AlwNI CAGNNNCTG 1 cut(s) 340
Ama87I CYCGRG 1 cut(s) 257
AoxI GGCC 4 cut(s) 19, 350, 426, 727
ApeKI GCWGC 4 cut(s) 103, 490, 548, 611
AspLEI GCGC 6 cut(s) 27, 29, 319, 367, 467, 490
AspS9I GGNCC 5 cut(s) 94, 132, 274, 507, 718
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 581
AvaI CYCGRG 1 cut(s) 257
AvaII GGWCC 5 cut(s) 94, 132, 274, 507, 718
AxyI CCTNAGG 1 cut(s) 705
BalI TGGCCA 1 cut(s) 428
BanI GGYRCC 2 cut(s) 80, 164
BanII GRGCYC 2 cut(s) 258, 565
BbrPI CACGTG 1 cut(s) 358
BbvI GCAGC 4 cut(s) 90, 502, 535, 598
BccI CCATC 3 cut(s) 164, 175, 437
BceAI ACGGC 3 cut(s) 14, 31, 452
BciT130I CCWGG 3 cut(s) 92, 251, 716
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 1 cut(s) 651
BfmI CTRYAG 1 cut(s) 104
BfoI RGCGCY 1 cut(s) 368
BfuAI ACCTGC 2 cut(s) 472, 708
BglII AGATCT 1 cut(s) 237
BlpI GCTNAGC 1 cut(s) 585
Bme1390I CCNGG 4 cut(s) 92, 215, 251, 716
Bme18I GGWCC 5 cut(s) 94, 132, 274, 507, 718
BmeT110I CYCGRG 1 cut(s) 257
BmgBI CACGTC 1 cut(s) 424
BmgT120I GGNCC 5 cut(s) 94, 132, 274, 507, 718
BmiI GGNNCC 5 cut(s) 82, 96, 134, 166, 713
BmrFI CCNGG 4 cut(s) 92, 215, 251, 716
Bpu10I CCTNAGC 2 cut(s) 396, 564
Bpu1102I GCTNAGC 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 215
BsaAI YACGTR 1 cut(s) 358
BsaHI GRCGYC 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 6 cut(s) 49, 98, 168, 249, 250, 730
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 4 cut(s) 91, 217, 287, 706
Bse21I CCTNAGG 1 cut(s) 705
BseBI CCWGG 3 cut(s) 92, 251, 716
BseDI CCNNGG 6 cut(s) 49, 98, 168, 249, 250, 730
BseLI CCNNNNNNNGG 4 cut(s) 91, 217, 287, 706
BseMII CTCAG 3 cut(s) 188, 248, 578
BsePI GCGCGC 1 cut(s) 25
BseRI GAGGAG 2 cut(s) 142, 556
BseX3I CGGCCG 1 cut(s) 350
BseXI GCAGC 4 cut(s) 90, 502, 535, 598
Bsh1236I CGCG 3 cut(s) 27, 51, 465
Bsh1285I CGRYCG 3 cut(s) 43, 288, 353
BshFI GGCC 4 cut(s) 21, 352, 428, 729
BshNI GGYRCC 2 cut(s) 80, 164
BsiEI CGRYCG 3 cut(s) 43, 288, 353
BsiHKCI CYCGRG 1 cut(s) 257
BsiSI CCGG 3 cut(s) 162, 215, 615
BsiWI CGTACG 1 cut(s) 444
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 4 cut(s) 91, 217, 287, 706
BsmAI GTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 4 cut(s) 21, 352, 428, 729
Bso31I GGTCTC 1 cut(s) 59
BsoBI CYCGRG 1 cut(s) 257
Bsp1286I GDGCHC 2 cut(s) 258, 565
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 5 cut(s) 172, 237, 285, 331, 384
Bsp1720I GCTNAGC 1 cut(s) 585
BspANI GGCC 4 cut(s) 21, 352, 428, 729
BspCNI CTCAG 3 cut(s) 189, 247, 577
BspFNI CGCG 3 cut(s) 27, 51, 465
BspLI GGNNCC 5 cut(s) 82, 96, 134, 166, 713
BspMAI CTGCAG 1 cut(s) 108
BspMI ACCTGC 2 cut(s) 472, 708
BspPI GGATC 2 cut(s) 180, 379
BspT107I GGYRCC 2 cut(s) 80, 164
BspTNI GGTCTC 1 cut(s) 59
BsrBI CCGCTC 2 cut(s) 349, 505
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 6 cut(s) 49, 98, 168, 249, 250, 730
BssHII GCGCGC 1 cut(s) 25
BssMI GATC 5 cut(s) 172, 237, 285, 331, 384
BssNI GRCGYC 1 cut(s) 54
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 3 cut(s) 92, 251, 716
Bst4CI ACNGT 3 cut(s) 10, 44, 70
Bst6I CTCTTC 2 cut(s) 41, 728
BstACI GRCGYC 1 cut(s) 54
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 358
BstC8I GCNNGC 3 cut(s) 23, 27, 675
BstDEI CTNAG 6 cut(s) 197, 234, 396, 564, 585, 705
BstDSI CCRYGG 2 cut(s) 49, 98
BstENI CCTNNNNNAGG 1 cut(s) 704
BstFNI CGCG 3 cut(s) 27, 51, 465
BstH2I RGCGCY 1 cut(s) 368
BstHHI GCGC 6 cut(s) 27, 29, 319, 367, 467, 490
BstKTI GATC 5 cut(s) 175, 240, 288, 334, 387
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 5 cut(s) 172, 237, 285, 331, 384
BstMCI CGRYCG 3 cut(s) 43, 288, 353
BstMWI GCNNNNNNNGC 7 cut(s) 24, 109, 314, 387, 487, 608, 674
BstNI CCWGG 3 cut(s) 92, 251, 716
BstSCI CCNGG 4 cut(s) 90, 213, 249, 714
BstSFI CTRYAG 1 cut(s) 104
BstUI CGCG 3 cut(s) 27, 51, 465
BstV1I GCAGC 4 cut(s) 90, 502, 535, 598
BstX2I RGATCY 2 cut(s) 172, 237
BstYI RGATCY 2 cut(s) 172, 237
BstZI CGGCCG 1 cut(s) 350
Bsu36I CCTNAGG 1 cut(s) 705
BsuRI GGCC 4 cut(s) 21, 352, 428, 729
BtgI CCRYGG 2 cut(s) 49, 98
BtrI CACGTC 1 cut(s) 424
BveI ACCTGC 2 cut(s) 472, 708
Cac8I GCNNGC 3 cut(s) 23, 27, 675
CaiI CAGNNNCTG 1 cut(s) 340
CciNI GCGGCCGC 1 cut(s) 350
CfoI GCGC 6 cut(s) 27, 29, 319, 367, 467, 490
Cfr13I GGNCC 5 cut(s) 94, 132, 274, 507, 718
Cfr42I CCGCGG 1 cut(s) 52
CseI GACGC 1 cut(s) 43
CsiI ACCWGGT 1 cut(s) 714
Csp6I GTAC 3 cut(s) 4, 262, 445
CviQI GTAC 3 cut(s) 4, 262, 445
DdeI CTNAG 6 cut(s) 197, 234, 396, 564, 585, 705
DpnI GATC 5 cut(s) 174, 239, 287, 333, 386
DpnII GATC 5 cut(s) 172, 237, 285, 331, 384
DrdI GACNNNNNNGTC 2 cut(s) 68, 272
DseDI GACNNNNNNGTC 2 cut(s) 68, 272
EaeI YGGCCR 3 cut(s) 19, 350, 426
EagI CGGCCG 1 cut(s) 350
Eam1104I CTCTTC 2 cut(s) 41, 728
EarI CTCTTC 2 cut(s) 41, 728
EciI GGCGGA 3 cut(s) 467, 515, 545
EclXI CGGCCG 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 168
Eco24I GRGCYC 2 cut(s) 258, 565
Eco31I GGTCTC 1 cut(s) 59
Eco47I GGWCC 5 cut(s) 94, 132, 274, 507, 718
Eco52I CGGCCG 1 cut(s) 350
Eco57I CTGAAG 1 cut(s) 161
Eco72I CACGTG 1 cut(s) 358
Eco81I CCTNAGG 1 cut(s) 705
Eco88I CYCGRG 1 cut(s) 257
EcoNI CCTNNNNNAGG 1 cut(s) 704
EcoO109I RGGNCCY 3 cut(s) 132, 274, 718
EcoRII CCWGG 3 cut(s) 90, 249, 714
EcoT14I CCWWGG 1 cut(s) 168
EcoT38I GRGCYC 2 cut(s) 258, 565
ErhI CCWWGG 1 cut(s) 168
FaqI GGGAC 1 cut(s) 80
FauI CCCGC 3 cut(s) 143, 218, 366
FblI GTMKAC 1 cut(s) 12
FriOI GRGCYC 2 cut(s) 258, 565
FspBI CTAG 1 cut(s) 651
GlaI GCGC 6 cut(s) 26, 28, 318, 366, 466, 489
HaeII RGCGCY 1 cut(s) 368
HaeIII GGCC 4 cut(s) 21, 352, 428, 729
HapII CCGG 3 cut(s) 162, 215, 615
HgaI GACGC 1 cut(s) 43
HhaI GCGC 6 cut(s) 27, 29, 319, 367, 467, 490
Hin1I GRCGYC 1 cut(s) 54
Hin6I GCGC 6 cut(s) 25, 27, 317, 365, 465, 488
HinP1I GCGC 6 cut(s) 25, 27, 317, 365, 465, 488
HincII GTYRAC 3 cut(s) 13, 187, 694
HindII GTYRAC 3 cut(s) 13, 187, 694
HinfI GANTC 1 cut(s) 578
HpaII CCGG 3 cut(s) 162, 215, 615
HphI GGTGA 1 cut(s) 581
Hpy166II GTNNAC 4 cut(s) 6, 13, 187, 694
Hpy188I TCNGA 5 cut(s) 180, 198, 237, 598, 638
Hpy188III TCNNGA 3 cut(s) 130, 289, 340
Hpy8I GTNNAC 4 cut(s) 6, 13, 187, 694
Hpy99I CGWCG 8 cut(s) 14, 17, 65, 74, 269, 286, 425, 473
HpyAV CCTTC 5 cut(s) 71, 157, 265, 520, 633
HpyCH4III ACNGT 3 cut(s) 10, 44, 70
HpyCH4IV ACGT 2 cut(s) 357, 423
HpyCH4V TGCA 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 7 cut(s) 24, 109, 314, 387, 487, 608, 674
HpyF3I CTNAG 6 cut(s) 197, 234, 396, 564, 585, 705
HpySE526I ACGT 2 cut(s) 357, 423
Hsp92I GRCGYC 1 cut(s) 54
HspAI GCGC 6 cut(s) 25, 27, 317, 365, 465, 488
KspI CCGCGG 1 cut(s) 52
Kzo9I GATC 5 cut(s) 172, 237, 285, 331, 384
LmnI GCTCC 4 cut(s) 342, 346, 502, 532
Lsp1109I GCAGC 4 cut(s) 90, 502, 535, 598
MabI ACCWGGT 1 cut(s) 714
MaeI CTAG 1 cut(s) 651
MaeII ACGT 2 cut(s) 357, 423
MaeIII GTNAC 1 cut(s) 620
MalI GATC 5 cut(s) 174, 239, 287, 333, 386
MbiI CCGCTC 2 cut(s) 349, 505
MboI GATC 5 cut(s) 172, 237, 285, 331, 384
MboII GAAGA 5 cut(s) 28, 112, 167, 232, 715
MflI RGATCY 2 cut(s) 172, 237
MhlI GDGCHC 2 cut(s) 258, 565
MlsI TGGCCA 1 cut(s) 428
MluNI TGGCCA 1 cut(s) 428
Mox20I TGGCCA 1 cut(s) 428
MscI TGGCCA 1 cut(s) 428
Msp20I TGGCCA 1 cut(s) 428
MspA1I CMGCKG 2 cut(s) 51, 611
MspI CCGG 3 cut(s) 162, 215, 615
MspR9I CCNGG 4 cut(s) 92, 215, 251, 716
MvaI CCWGG 3 cut(s) 92, 251, 716
MvnI CGCG 3 cut(s) 27, 51, 465
MwoI GCNNNNNNNGC 7 cut(s) 24, 109, 314, 387, 487, 608, 674
NciI CCSGG 1 cut(s) 215
NdeII GATC 5 cut(s) 172, 237, 285, 331, 384
NlaIV GGNNCC 5 cut(s) 82, 96, 134, 166, 713
NmuCI GTSAC 1 cut(s) 620
NotI GCGGCCGC 1 cut(s) 350
PaeR7I CTCGAG 1 cut(s) 257
PaqCI CACCTGC 1 cut(s) 472
PasI CCCWGGG 1 cut(s) 250
PauI GCGCGC 1 cut(s) 25
PcsI WCGNNNNNNNCGW 3 cut(s) 66, 264, 440
PfeI GAWTC 1 cut(s) 578
Pfl23II CGTACG 1 cut(s) 444
PflMI CCANNNNNTGG 1 cut(s) 91
Ple19I CGATCG 1 cut(s) 288
PmaCI CACGTG 1 cut(s) 358
PmlI CACGTG 1 cut(s) 358
Ppu21I YACGTR 1 cut(s) 358
PpuMI RGGWCCY 3 cut(s) 132, 274, 718
Psp5II RGGWCCY 3 cut(s) 132, 274, 718
Psp6I CCWGG 3 cut(s) 90, 249, 714
PspCI CACGTG 1 cut(s) 358
PspGI CCWGG 3 cut(s) 90, 249, 714
PspLI CGTACG 1 cut(s) 444
PspN4I GGNNCC 5 cut(s) 82, 96, 134, 166, 713
PspPI GGNCC 5 cut(s) 94, 132, 274, 507, 718
PspPPI RGGWCCY 3 cut(s) 132, 274, 718
PspXI VCTCGAGB 1 cut(s) 257
PstI CTGCAG 1 cut(s) 108
PstNI CAGNNNCTG 1 cut(s) 340
PsuI RGATCY 2 cut(s) 172, 237
PteI GCGCGC 1 cut(s) 25
PvuI CGATCG 1 cut(s) 288
RsaI GTAC 3 cut(s) 5, 263, 446
RsaNI GTAC 3 cut(s) 4, 262, 445
SacII CCGCGG 1 cut(s) 52
SalI GTCGAC 1 cut(s) 11
Sau3AI GATC 5 cut(s) 172, 237, 285, 331, 384
Sau96I GGNCC 5 cut(s) 94, 132, 274, 507, 718
ScrFI CCNGG 4 cut(s) 92, 215, 251, 716
SduI GDGCHC 2 cut(s) 258, 565
SexAI ACCWGGT 1 cut(s) 714
SfcI CTRYAG 1 cut(s) 104
Sfr274I CTCGAG 1 cut(s) 257
Sfr303I CCGCGG 1 cut(s) 52
SgrBI CCGCGG 1 cut(s) 52
SgrDI CGTCGACG 1 cut(s) 11
SinI GGWCC 5 cut(s) 94, 132, 274, 507, 718
SlaI CTCGAG 1 cut(s) 257
SmlI CTYRAG 2 cut(s) 257, 302
SmoI CTYRAG 2 cut(s) 257, 302
SspMI CTAG 1 cut(s) 651
StyD4I CCNGG 4 cut(s) 90, 213, 249, 714
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 3 cut(s) 10, 44, 70
TaiI ACGT 2 cut(s) 360, 426
TaqI TCGA 7 cut(s) 12, 39, 60, 123, 258, 284, 471
TatI WGTACW 1 cut(s) 3
TauI GCSGC 6 cut(s) 21, 54, 352, 355, 611, 668
TfiI GAWTC 1 cut(s) 578
TseFI GTSAC 1 cut(s) 620
TseI GCWGC 4 cut(s) 103, 490, 548, 611
Tsp45I GTSAC 1 cut(s) 620
TspGWI ACGGA 1 cut(s) 359
Van91I CCANNNNNTGG 1 cut(s) 91
VpaK11BI GGWCC 5 cut(s) 94, 132, 274, 507, 718
XagI CCTNNNNNAGG 1 cut(s) 704
XcmI CCANNNNNNNNNTGG 1 cut(s) 517
XhoI CTCGAG 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 12
XspI CTAG 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.