Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001979

Physical Location & Seq

Genomic Coordinates Reverse (-)

10159221 .. 10162323

Gene Structure 3103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G27460.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTCGTCGTCGCCGGACATTGCCGGAATCTTAGATAATACGAAGGAGCTTGATCGGTTAAGAAAAGAACAAGAGGAAGTTCTTGTGGAGATTAATAAGATGCATAAGAAGCTTCAAGCTACGCCGGAGATAGTTGAGAAGCCTGGTGATATTTCATTGTCAAAGCTTAAAAATTTGTACATTCAAGCAAAAGAGCTTTCAGAAAGTGAAGTAACCGTTTCAAATATTCTGCTTACTCAGTTGGATTCTCTGCTTCCATCTGGACCAACTGGGCAACAACGCAGAAAATTAGAAGGCAACGAACAGAAGAGAAAGAGAATGAAAGTAGATACAGATGTAACAAGAGTTTCTCCTTCCATGAGAAATCAAATCGAGGCATATGCTAGTCTAAAGGGTGAACAGGTTGCTGCAAGAGTCACAGCTGAAGATGCCGAGAAGGATGAATGGTTTGTGGTGAAAGTTATTCACTTCGACAGAGAAACAAAAGAAGTTGAAGTACTTGATGAAGAACCAGGAGATGATGAAGAAGGAGGTGGCCAGAGGACGTATAAACTATCAATGTCATGTATTTTACCGTTTCCAAAACGGAATGATCCTTCAAGCACACAAGAGTTTATACCAGGGAAACACGTCTTAGCTGTATATCCAGGAACCACAGCCCTCTACAAGGCAACTGTTATAAGTACCCCACGAAAGAGGAAATCTGACGAGTACTTGCTAGAATTTGATGATGATGAAGAAGACGGAGCATTACCTCAAAGAACAGTGCCATTCCACAAAGTGGTAGCTTTACCAGAAGGCCATCGCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051276 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1325

Protein Analysis

270

Amino Acids

30.5

Weight (kDa)

5.29

Isoelectric Point (pI)

58.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SGF29_Tudor	PF07039	131 - 232	5e-25	SGF29 tudor-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT5G40550 AT5G40550 AT5G40550 AT5G40550
fragaria_vesca	FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240
malus_domestica	MD09G1022400.v1.1 MD17G1021800.v1.1 MD17G1021900.v1.1
prunus_persica	Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1
pyrus_communis	pycom111g01880 pycom17g01900
rosa_chinensis	RchiOBHm_Chr2g0123161
rosa_laevigata	RLG00000018732
rosa_multiflora	Rmu_sc0005573.1_g000008 Rmu_sc0018145.1_g000002
rosa_roxburghii	Rroxscaffold_2G00120870
rosa_rugosa	Rorug02G0243400 Rorug02G0243400 Rorug02G0243500
rosa_samantha	Rh2AG303000 Rh2BG310900 Rh2CG289300 Rh2DG327000
rosa_wichuraiana	Rw0G004900 Rw2G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	680
AccB7I	CCANNNNNTGG	1 cut(s)	781
AclWI	GGATC	1 cut(s)	587
AcoI	YGGCCR	1 cut(s)	535
AcsI	RAATTY	2 cut(s)	172, 722
AcuI	CTGAAG	1 cut(s)	444
AdeI	CACNNNGTG	1 cut(s)	781
AfaI	GTAC	4 cut(s)	179, 498, 685, 713
AfiI	CCNNNNNNNGG	2 cut(s)	667, 781
AflIII	ACRYGT	1 cut(s)	628
AgsI	TTSAA	5 cut(s)	116, 185, 222, 494, 600
AjiI	CACGTC	1 cut(s)	631
AjnI	CCWGG	4 cut(s)	142, 511, 619, 646
AluBI	AGCT	8 cut(s)	49, 112, 119, 166, 196, 422, 638, 788
AluI	AGCT	8 cut(s)	49, 112, 119, 166, 196, 422, 638, 788
AlwI	GGATC	1 cut(s)	587
AoxI	GGCC	2 cut(s)	535, 799
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	2 cut(s)	172, 722
AseI	ATTAAT	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	3 cut(s)	158, 407, 466
AvaII	GGWCC	1 cut(s)	263
BaeI	ACNNNNGTAYC	2 cut(s)	321, 354
BalI	TGGCCA	1 cut(s)	537
BarI	GAAGNNNNNNTAC	2 cut(s)	480, 512
BbsI	GAAGAC	1 cut(s)	747
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	2 cut(s)	265, 810
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BciT130I	CCWGG	4 cut(s)	144, 513, 621, 648
BfaI	CTAG	2 cut(s)	384, 719
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
BmcAI	AGTACT	2 cut(s)	498, 713
Bme1390I	CCNGG	4 cut(s)	144, 513, 621, 648
Bme18I	GGWCC	1 cut(s)	263
BmgBI	CACGTC	1 cut(s)	631
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	652
BmrFI	CCNGG	4 cut(s)	144, 513, 621, 648
BmrI	ACTGGG	1 cut(s)	279
BmsI	GCATC	2 cut(s)	90, 418
BmuI	ACTGGG	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	747
BsaJI	CCNNGG	1 cut(s)	620
Bsc4I	CCNNNNNNNGG	2 cut(s)	667, 781
Bse1I	ACTGG	2 cut(s)	274, 808
Bse3DI	GCAATG	1 cut(s)	18
BseBI	CCWGG	4 cut(s)	144, 513, 621, 648
BseDI	CCNNGG	1 cut(s)	620
BseGI	GGATG	1 cut(s)	445
BseLI	CCNNNNNNNGG	2 cut(s)	667, 781
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	251
BseNI	ACTGG	2 cut(s)	274, 808
BseXI	GCAGC	1 cut(s)	394
BshFI	GGCC	2 cut(s)	537, 801
BsiSI	CCGG	3 cut(s)	14, 24, 125
BslI	CCNNNNNNNGG	2 cut(s)	667, 781
BsnI	GGCC	2 cut(s)	537, 801
Bsp1407I	TGTACA	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	52, 592
BspANI	GGCC	2 cut(s)	537, 801
BspCNI	CTCAG	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	652
BspPI	GGATC	1 cut(s)	587
BsrDI	GCAATG	1 cut(s)	18
BsrGI	TGTACA	1 cut(s)	177
BsrI	ACTGG	2 cut(s)	274, 808
BssECI	CCNNGG	1 cut(s)	620
BssMI	GATC	2 cut(s)	52, 592
Bst2UI	CCWGG	4 cut(s)	144, 513, 621, 648
Bst4CI	ACNGT	4 cut(s)	217, 576, 676, 766
Bst6I	CTCTTC	1 cut(s)	302
BstAUI	TGTACA	1 cut(s)	177
BstDEI	CTNAG	3 cut(s)	31, 237, 634
BstENI	CCTNNNNNAGG	1 cut(s)	665
BstF5I	GGATG	1 cut(s)	445
BstKTI	GATC	2 cut(s)	55, 595
BstMBI	GATC	2 cut(s)	52, 592
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 428
BstNI	CCWGG	4 cut(s)	144, 513, 621, 648
BstSCI	CCNGG	4 cut(s)	142, 511, 619, 646
BstV1I	GCAGC	1 cut(s)	394
BstV2I	GAAGAC	1 cut(s)	747
BsuRI	GGCC	2 cut(s)	537, 801
BtgZI	GCGATG	1 cut(s)	788
BtrI	CACGTC	1 cut(s)	631
BtsCI	GGATG	1 cut(s)	445
BtsIMutI	CAGTG	1 cut(s)	771
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	4 cut(s)	178, 497, 684, 712
CviAII	CATG	2 cut(s)	358, 564
CviQI	GTAC	4 cut(s)	178, 497, 684, 712
DdeI	CTNAG	3 cut(s)	31, 237, 634
DpnI	GATC	2 cut(s)	54, 594
DpnII	GATC	2 cut(s)	52, 592
DraIII	CACNNNGTG	1 cut(s)	781
EaeI	YGGCCR	1 cut(s)	535
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	444
EcoNI	CCTNNNNNAGG	1 cut(s)	665
EcoRII	CCWGG	4 cut(s)	142, 511, 619, 646
EcoT22I	ATGCAT	1 cut(s)	105
FaeI	CATG	2 cut(s)	361, 567
FaiI	YATR	9 cut(s)	105, 359, 379, 381, 549, 565, 617, 643, 680
FatI	CATG	2 cut(s)	357, 563
FauNDI	CATATG	1 cut(s)	379
Fnu4HI	GCNGC	1 cut(s)	408
FokI	GGATG	1 cut(s)	452
Fsp4HI	GCNGC	1 cut(s)	408
FspBI	CTAG	2 cut(s)	384, 719
GluI	GCNGC	1 cut(s)	408
HaeIII	GGCC	2 cut(s)	537, 801
HapII	CCGG	3 cut(s)	14, 24, 125
Hin1II	CATG	2 cut(s)	361, 567
HindIII	AAGCTT	2 cut(s)	110, 164
HinfI	GANTC	3 cut(s)	27, 245, 414
HpaII	CCGG	3 cut(s)	14, 24, 125
HphI	GGTGA	3 cut(s)	158, 407, 466
Hpy166II	GTNNAC	1 cut(s)	398
Hpy188I	TCNGA	2 cut(s)	202, 706
Hpy188III	TCNNGA	1 cut(s)	261
Hpy8I	GTNNAC	1 cut(s)	398
Hpy99I	CGWCG	2 cut(s)	10, 13
HpyAV	CCTTC	7 cut(s)	37, 287, 363, 430, 521, 606, 791
HpyCH4III	ACNGT	4 cut(s)	217, 576, 676, 766
HpyCH4IV	ACGT	2 cut(s)	545, 630
HpyCH4V	TGCA	2 cut(s)	103, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 428
HpyF3I	CTNAG	3 cut(s)	31, 237, 634
HpySE526I	ACGT	2 cut(s)	545, 630
Hsp92II	CATG	2 cut(s)	361, 567
Kzo9I	GATC	2 cut(s)	52, 592
LmnI	GCTCC	2 cut(s)	46, 746
Lsp1109I	GCAGC	1 cut(s)	394
LweI	GCATC	2 cut(s)	90, 418
MaeI	CTAG	2 cut(s)	384, 719
MaeII	ACGT	2 cut(s)	545, 630
MaeIII	GTNAC	3 cut(s)	211, 337, 415
MalI	GATC	2 cut(s)	54, 594
MboI	GATC	2 cut(s)	52, 592
MboII	GAAGA	6 cut(s)	319, 437, 518, 536, 749, 752
MlsI	TGGCCA	1 cut(s)	537
MluCI	AATT	3 cut(s)	172, 287, 722
MluNI	TGGCCA	1 cut(s)	537
MlyI	GAGTC	1 cut(s)	423
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	7 cut(s)	67, 367, 524, 534, 671, 690, 765
Mox20I	TGGCCA	1 cut(s)	537
Mph1103I	ATGCAT	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	537
MseI	TTAA	3 cut(s)	59, 93, 168
Msp20I	TGGCCA	1 cut(s)	537
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	3 cut(s)	14, 24, 125
MspR9I	CCNGG	4 cut(s)	144, 513, 621, 648
MvaI	CCWGG	4 cut(s)	144, 513, 621, 648
MwoI	GCNNNNNNNGC	2 cut(s)	109, 428
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	2 cut(s)	52, 592
NlaIII	CATG	2 cut(s)	361, 567
NlaIV	GGNNCC	1 cut(s)	652
NmeAIII	GCCGAG	1 cut(s)	457
NmuCI	GTSAC	1 cut(s)	415
NsiI	ATGCAT	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	27, 245
PflMI	CCANNNNNTGG	1 cut(s)	781
PfoI	TCCNGGA	1 cut(s)	646
PkrI	GCNGC	1 cut(s)	409
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
PshBI	ATTAAT	1 cut(s)	93
PsiI	TTATAA	1 cut(s)	680
Psp6I	CCWGG	4 cut(s)	142, 511, 619, 646
PspGI	CCWGG	4 cut(s)	142, 511, 619, 646
PspN4I	GGNNCC	1 cut(s)	652
PspPI	GGNCC	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	4 cut(s)	179, 498, 685, 713
RsaNI	GTAC	4 cut(s)	178, 497, 684, 712
SaqAI	TTAA	3 cut(s)	59, 93, 168
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	2 cut(s)	52, 592
Sau96I	GGNCC	1 cut(s)	263
ScaI	AGTACT	2 cut(s)	498, 713
SchI	GAGTC	1 cut(s)	423
ScrFI	CCNGG	4 cut(s)	144, 513, 621, 648
SfaNI	GCATC	2 cut(s)	90, 418
SinI	GGWCC	1 cut(s)	263
Sse9I	AATT	3 cut(s)	172, 287, 722
SspI	AATATT	1 cut(s)	226
SspMI	CTAG	2 cut(s)	384, 719
StyD4I	CCNGG	4 cut(s)	142, 511, 619, 646
TaaI	ACNGT	4 cut(s)	217, 576, 676, 766
TaiI	ACGT	2 cut(s)	548, 633
TaqI	TCGA	2 cut(s)	372, 471
TasI	AATT	3 cut(s)	172, 287, 722
TatI	WGTACW	3 cut(s)	177, 496, 711
TfiI	GAWTC	2 cut(s)	27, 245
Tru1I	TTAA	3 cut(s)	59, 93, 168
Tru9I	TTAA	3 cut(s)	59, 93, 168
TscAI	CASTG	1 cut(s)	771
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	6 cut(s)	144, 335, 456, 519, 537, 750
TspGWI	ACGGA	2 cut(s)	601, 759
TspRI	CASTG	1 cut(s)	771
Van91I	CCANNNNNTGG	1 cut(s)	781
VpaK11BI	GGWCC	1 cut(s)	263
VspI	ATTAAT	1 cut(s)	93
XagI	CCTNNNNNAGG	1 cut(s)	665
XapI	RAATTY	2 cut(s)	172, 722
XspI	CTAG	2 cut(s)	384, 719
ZrmI	AGTACT	2 cut(s)	498, 713
Zsp2I	ATGCAT	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.