Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001979

Physical Location & Seq

Genomic Coordinates Reverse (-)

1343642 .. 1346641

Gene Structure 3000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1022400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTCTGCGCCGGACATTGCAGGTATACTGGAAAAGTCGAAGGAGCTCGATCAATTAAGGAAAGAGCAAGAAGATGTGCTCATTGAGATAAACAAGATGCATAAGAAGCTCCAAGCTACTCCTGAAGTGGTAGAGAAGCCTGGGGATAATTCATTGTTGAAGCTGAAGAATTTATATGTGCATGCCAAAGATCTTTCTGAAAGTGAAGTAAGTGTTTCCAATTTGTTGTTGAGTCAGCTTGATGCTCTTTTGCCTTCTGGACCTCCAGGGCAGCCGCGAAGAAGGATGGGTAATGAGCAGAAAAGGAAGAGAATGAAGCCTGATTCAGACATTTCAAGGATTTCCCCTTCCATGCGAAGTCAACTTGAGGCTTGTGCTAGTCTAAAAGGCGAACAGGTAGCAGCTAGGGTCACAGTCACTCAAGAAGATGCTGACAAGGATGAGTGGTTTGTTGTAAAAGTGATGCATTTTGACAAGGATACAAGAGAATTTGAAGTACTAGATGAGGAGCCGGGTGATGATGAAGAGGGCGGTGTCCAAAGAAAGTACAAGTTGCCTATGAGCGCTATTATACCTTTCCCGAAGAGAAACGATCCTTCCAGTGCTATAGATTTCCCTACTGGAAGACCCGTTTTAGCAGTATATCCAGGAACAACTGCACTATACAAGGCAACTGTGGTGAATGGCCATCGCAAGACGGATGATTATTTGTTGGAATTCGATGACGACGAGGAAGATGGATCCTTGCCTCAGAGGACGGTGCCCTTCCATAAGGTGGTTGCCCTGCCGGAAGGCCATCGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051276 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1325

Protein Analysis

269

Amino Acids

30.12

Weight (kDa)

5.32

Isoelectric Point (pI)

61.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SGF29_Tudor	PF07039	129 - 263	3.3e-33	SGF29 tudor-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT5G40550 AT5G40550 AT5G40550 AT5G40550
fragaria_vesca	FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240
malus_domestica	MD09G1022400.v1.1 MD17G1021800.v1.1 MD17G1021900.v1.1
prunus_persica	Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1
pyrus_communis	pycom111g01880 pycom17g01900
rosa_chinensis	RchiOBHm_Chr2g0123161
rosa_laevigata	RLG00000018732
rosa_multiflora	Rmu_sc0005573.1_g000008 Rmu_sc0018145.1_g000002
rosa_roxburghii	Rroxscaffold_2G00120870
rosa_rugosa	Rorug02G0243400 Rorug02G0243400 Rorug02G0243500
rosa_samantha	Rh2AG303000 Rh2BG310900 Rh2CG289300 Rh2DG327000
rosa_wichuraiana	Rw0G004900 Rw2G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	11
AccB1I	GGYRCC	1 cut(s)	760
AccB7I	CCANNNNNTGG	1 cut(s)	775
AccI	GTMKAC	1 cut(s)	25
AccII	CGCG	1 cut(s)	277
AciI	CCGC	2 cut(s)	275, 531
AclWI	GGATC	3 cut(s)	587, 735, 748
AcoI	YGGCCR	1 cut(s)	685
AcsI	RAATTY	3 cut(s)	169, 488, 716
AcuI	CTGAAG	2 cut(s)	144, 185
AfaI	GTAC	2 cut(s)	498, 548
AfeI	AGCGCT	1 cut(s)	565
AfiI	CCNNNNNNNGG	1 cut(s)	775
AgsI	TTSAA	3 cut(s)	160, 336, 494
AjnI	CCWGG	3 cut(s)	139, 265, 646
AluBI	AGCT	6 cut(s)	46, 109, 116, 163, 238, 404
AluI	AGCT	6 cut(s)	46, 109, 116, 163, 238, 404
Alw21I	GWGCWC	2 cut(s)	48, 81
AlwI	GGATC	3 cut(s)	587, 735, 748
Aor51HI	AGCGCT	1 cut(s)	565
AoxI	GGCC	2 cut(s)	685, 793
ApeKI	GCWGC	2 cut(s)	271, 401
ApoI	RAATTY	3 cut(s)	169, 488, 716
AspLEI	GCGC	2 cut(s)	10, 566
AspS9I	GGNCC	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	513
AsuHPI	GGTGA	2 cut(s)	527, 691
AvaII	GGWCC	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	765
BalI	TGGCCA	1 cut(s)	687
BamHI	GGATCC	1 cut(s)	740
BanI	GGYRCC	1 cut(s)	760
BanII	GRGCYC	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	631
Bbv12I	GWGCWC	2 cut(s)	48, 81
BbvI	GCAGC	2 cut(s)	283, 413
BccI	CCATC	4 cut(s)	280, 696, 731, 804
BciT130I	CCWGG	3 cut(s)	141, 267, 648
BciVI	GTATCC	1 cut(s)	472
BcnI	CCSGG	1 cut(s)	513
BfaI	CTAG	3 cut(s)	378, 405, 500
BfmI	CTRYAG	1 cut(s)	606
BfoI	RGCGCY	1 cut(s)	567
BfuAI	ACCTGC	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	472
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	3 cut(s)	272, 275, 402
BlsI	GCNGC	3 cut(s)	273, 276, 403
BmcAI	AGTACT	1 cut(s)	498
Bme1390I	CCNGG	4 cut(s)	141, 267, 513, 648
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	3 cut(s)	510, 742, 762
BmrFI	CCNGG	4 cut(s)	141, 267, 513, 648
BmsI	GCATC	4 cut(s)	87, 232, 418, 453
BpiI	GAAGAC	1 cut(s)	631
BpmI	CTGGAG	1 cut(s)	249
BpuEI	CTTGAG	2 cut(s)	386, 405
BpuMI	CCSGG	1 cut(s)	513
BsaJI	CCNNGG	2 cut(s)	140, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	775
Bse1I	ACTGG	4 cut(s)	33, 600, 625, 802
Bse3DI	GCAATG	1 cut(s)	15
BseBI	CCWGG	3 cut(s)	141, 267, 648
BseDI	CCNNGG	2 cut(s)	140, 266
BseGI	GGATG	3 cut(s)	291, 445, 706
BseLI	CCNNNNNNNGG	1 cut(s)	775
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	764
BseNI	ACTGG	4 cut(s)	33, 600, 625, 802
BseRI	GAGGAG	1 cut(s)	521
BseSI	GKGCMC	1 cut(s)	765
BseXI	GCAGC	2 cut(s)	283, 413
BsgI	GTGCAG	1 cut(s)	642
Bsh1236I	CGCG	1 cut(s)	277
BshFI	GGCC	2 cut(s)	687, 795
BshNI	GGYRCC	1 cut(s)	760
BsiHKAI	GWGCWC	2 cut(s)	48, 81
BsiSI	CCGG	3 cut(s)	11, 512, 788
BslI	CCNNNNNNNGG	1 cut(s)	775
BsnI	GGCC	2 cut(s)	687, 795
Bsp1286I	GDGCHC	3 cut(s)	48, 81, 765
Bsp143I	GATC	4 cut(s)	49, 190, 592, 740
BspACI	CCGC	2 cut(s)	275, 531
BspANI	GGCC	2 cut(s)	687, 795
BspCNI	CTCAG	1 cut(s)	763
BspFNI	CGCG	1 cut(s)	277
BspLI	GGNNCC	3 cut(s)	510, 742, 762
BspMI	ACCTGC	1 cut(s)	11
BspPI	GGATC	3 cut(s)	587, 735, 748
BspT107I	GGYRCC	1 cut(s)	760
BsrDI	GCAATG	1 cut(s)	15
BsrI	ACTGG	4 cut(s)	33, 600, 625, 802
BssECI	CCNNGG	2 cut(s)	140, 266
BssMI	GATC	4 cut(s)	49, 190, 592, 740
BssNAI	GTATAC	1 cut(s)	26
Bst1107I	GTATAC	1 cut(s)	26
Bst2UI	CCWGG	3 cut(s)	141, 267, 648
Bst4CI	ACNGT	3 cut(s)	415, 676, 760
Bst6I	CTCTTC	3 cut(s)	302, 519, 578
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	750
BstF5I	GGATG	3 cut(s)	291, 445, 706
BstFNI	CGCG	1 cut(s)	277
BstH2I	RGCGCY	1 cut(s)	567
BstHHI	GCGC	2 cut(s)	10, 566
BstKTI	GATC	4 cut(s)	52, 193, 595, 743
BstMBI	GATC	4 cut(s)	49, 190, 592, 740
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNI	CCWGG	3 cut(s)	141, 267, 648
BstNSI	RCATGY	1 cut(s)	185
BstSCI	CCNGG	4 cut(s)	139, 265, 511, 646
BstSFI	CTRYAG	1 cut(s)	606
BstSLI	GKGCMC	1 cut(s)	765
BstUI	CGCG	1 cut(s)	277
BstV1I	GCAGC	2 cut(s)	283, 413
BstV2I	GAAGAC	1 cut(s)	631
BstX2I	RGATCY	2 cut(s)	190, 740
BstYI	RGATCY	2 cut(s)	190, 740
BstZ17I	GTATAC	1 cut(s)	26
BsuI	GTATCC	1 cut(s)	472
BsuRI	GGCC	2 cut(s)	687, 795
BtgZI	GCGATG	2 cut(s)	674, 782
BtsCI	GGATG	3 cut(s)	291, 445, 706
BtsIMutI	CAGTG	1 cut(s)	607
BveI	ACCTGC	1 cut(s)	11
Cac8I	GCNNGC	1 cut(s)	183
CfoI	GCGC	2 cut(s)	10, 566
Cfr13I	GGNCC	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	497, 547
CviAII	CATG	2 cut(s)	182, 352
CviQI	GTAC	2 cut(s)	497, 547
DdeI	CTNAG	1 cut(s)	750
DpnI	GATC	4 cut(s)	51, 192, 594, 742
DpnII	GATC	4 cut(s)	49, 190, 592, 740
EaeI	YGGCCR	1 cut(s)	685
Eam1104I	CTCTTC	3 cut(s)	302, 519, 578
EarI	CTCTTC	3 cut(s)	302, 519, 578
Ecl136II	GAGCTC	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	260
Eco47III	AGCGCT	1 cut(s)	565
Eco53kI	GAGCTC	1 cut(s)	46
Eco57I	CTGAAG	2 cut(s)	144, 185
EcoICRI	GAGCTC	1 cut(s)	46
EcoRI	GAATTC	1 cut(s)	716
EcoRII	CCWGG	3 cut(s)	139, 265, 646
EcoT22I	ATGCAT	2 cut(s)	102, 468
EcoT38I	GRGCYC	1 cut(s)	48
FaeI	CATG	2 cut(s)	185, 355
FatI	CATG	2 cut(s)	181, 351
FblI	GTMKAC	1 cut(s)	25
Fnu4HI	GCNGC	3 cut(s)	272, 275, 402
FokI	GGATG	3 cut(s)	298, 452, 713
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	3 cut(s)	272, 275, 402
FspBI	CTAG	3 cut(s)	378, 405, 500
GlaI	GCGC	2 cut(s)	9, 565
GluI	GCNGC	3 cut(s)	272, 275, 402
GsuI	CTGGAG	1 cut(s)	249
HaeII	RGCGCY	1 cut(s)	567
HaeIII	GGCC	2 cut(s)	687, 795
HapII	CCGG	3 cut(s)	11, 512, 788
HhaI	GCGC	2 cut(s)	10, 566
Hin1II	CATG	2 cut(s)	185, 355
Hin6I	GCGC	2 cut(s)	8, 564
HinP1I	GCGC	2 cut(s)	8, 564
HincII	GTYRAC	1 cut(s)	362
HindII	GTYRAC	1 cut(s)	362
HinfI	GANTC	2 cut(s)	232, 323
HpaII	CCGG	3 cut(s)	11, 512, 788
HphI	GGTGA	2 cut(s)	527, 691
Hpy166II	GTNNAC	2 cut(s)	26, 362
Hpy188I	TCNGA	3 cut(s)	199, 328, 753
Hpy188III	TCNNGA	4 cut(s)	122, 258, 422, 580
Hpy8I	GTNNAC	2 cut(s)	26, 362
Hpy99I	CGWCG	1 cut(s)	731
HpyAV	CCTTC	7 cut(s)	34, 264, 276, 357, 606, 775, 785
HpyCH4III	ACNGT	3 cut(s)	415, 676, 760
HpyCH4V	TGCA	5 cut(s)	20, 100, 181, 466, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	1 cut(s)	750
Hsp92II	CATG	2 cut(s)	185, 355
HspAI	GCGC	2 cut(s)	8, 564
Kzo9I	GATC	4 cut(s)	49, 190, 592, 740
LmnI	GCTCC	3 cut(s)	43, 114, 508
Lsp1109I	GCAGC	2 cut(s)	283, 413
LweI	GCATC	4 cut(s)	87, 232, 418, 453
MaeI	CTAG	3 cut(s)	378, 405, 500
MaeIII	GTNAC	2 cut(s)	409, 415
MalI	GATC	4 cut(s)	51, 192, 594, 742
MboI	GATC	4 cut(s)	49, 190, 592, 740
MboII	GAAGA	9 cut(s)	83, 178, 291, 319, 437, 536, 595, 636, 746
MflI	RGATCY	2 cut(s)	190, 740
MhlI	GDGCHC	3 cut(s)	48, 81, 765
MlsI	TGGCCA	1 cut(s)	687
MluCI	AATT	6 cut(s)	53, 148, 169, 220, 488, 716
MluNI	TGGCCA	1 cut(s)	687
MlyI	GAGTC	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	693
MnlI	CCTC	7 cut(s)	273, 361, 499, 520, 724, 747, 759
Mox20I	TGGCCA	1 cut(s)	687
Mph1103I	ATGCAT	2 cut(s)	102, 468
MscI	TGGCCA	1 cut(s)	687
MseI	TTAA	1 cut(s)	56
Msp20I	TGGCCA	1 cut(s)	687
MspI	CCGG	3 cut(s)	11, 512, 788
MspR9I	CCNGG	4 cut(s)	141, 267, 513, 648
MvaI	CCWGG	3 cut(s)	141, 267, 648
MvnI	CGCG	1 cut(s)	277
MwoI	GCNNNNNNNGC	1 cut(s)	106
NciI	CCSGG	1 cut(s)	513
NdeII	GATC	4 cut(s)	49, 190, 592, 740
NlaIII	CATG	2 cut(s)	185, 355
NlaIV	GGNNCC	3 cut(s)	510, 742, 762
NmuCI	GTSAC	2 cut(s)	409, 415
NsiI	ATGCAT	2 cut(s)	102, 468
NspI	RCATGY	1 cut(s)	185
PaeI	GCATGC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	726
PfeI	GAWTC	1 cut(s)	323
PflMI	CCANNNNNTGG	1 cut(s)	775
PfoI	TCCNGGA	1 cut(s)	646
PkrI	GCNGC	3 cut(s)	273, 276, 403
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	3 cut(s)	139, 265, 646
PspGI	CCWGG	3 cut(s)	139, 265, 646
PspN4I	GGNNCC	3 cut(s)	510, 742, 762
PspPI	GGNCC	1 cut(s)	260
PsuI	RGATCY	2 cut(s)	190, 740
RsaI	GTAC	2 cut(s)	498, 548
RsaNI	GTAC	2 cut(s)	497, 547
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	3 cut(s)	272, 275, 402
Sau3AI	GATC	4 cut(s)	49, 190, 592, 740
Sau96I	GGNCC	1 cut(s)	260
ScaI	AGTACT	1 cut(s)	498
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	4 cut(s)	141, 267, 513, 648
SduI	GDGCHC	3 cut(s)	48, 81, 765
SfaNI	GCATC	4 cut(s)	87, 232, 418, 453
SfcI	CTRYAG	1 cut(s)	606
SinI	GGWCC	1 cut(s)	260
SmlI	CTYRAG	2 cut(s)	365, 420
SmoI	CTYRAG	2 cut(s)	365, 420
SphI	GCATGC	1 cut(s)	185
Sse9I	AATT	6 cut(s)	53, 148, 169, 220, 488, 716
SsiI	CCGC	2 cut(s)	275, 531
SspMI	CTAG	3 cut(s)	378, 405, 500
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	4 cut(s)	139, 265, 511, 646
TaaI	ACNGT	3 cut(s)	415, 676, 760
TaqI	TCGA	3 cut(s)	38, 48, 720
TasI	AATT	6 cut(s)	53, 148, 169, 220, 488, 716
TatI	WGTACW	2 cut(s)	496, 546
TauI	GCSGC	1 cut(s)	277
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	1 cut(s)	607
TseFI	GTSAC	2 cut(s)	409, 415
TseI	GCWGC	2 cut(s)	271, 401
Tsp45I	GTSAC	2 cut(s)	409, 415
TspDTI	ATGAA	3 cut(s)	141, 329, 537
TspGWI	ACGGA	1 cut(s)	713
TspRI	CASTG	1 cut(s)	607
Van91I	CCANNNNNTGG	1 cut(s)	775
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	3 cut(s)	169, 488, 716
XceI	RCATGY	1 cut(s)	185
XmiI	GTMKAC	1 cut(s)	25
XspI	CTAG	3 cut(s)	378, 405, 500
ZrmI	AGTACT	1 cut(s)	498
Zsp2I	ATGCAT	2 cut(s)	102, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.