Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001979

Physical Location & Seq

Genomic Coordinates Reverse (-)

25157543 .. 25161251

Gene Structure 3709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0243400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCAGAGGCGAGCCCAGATGGGATCCGATTCCTTATGGAATTTGATCTAGAACGATGGCCAGGTTCTGGTGTGGGCGACTTTGTGGTGCGACGGTGTTGCGGTGTTGGGATGCGATGCAGCCGCGGGGCAGTGCAAGGTGGAGAGATGGCGGGGTGTTATTTTGGTTATGTAGAGTGTATCTGGAAAAACGTATTTGCTTCCACAATTGCAGCTAATCAGCTATATCTCAAAGTTGAGCCACCCCCAACAGCTAATGGCAGGAAATTTGGTGGGAATCCAGTCATGGCAGTGTTTTACCTGGAGGACAAGTTTGCTCATGGTGACTATGACGCTAGTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051276 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1325

Protein Analysis

114

Amino Acids

12.46

Weight (kDa)

5.3

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT5G40550 AT5G40550 AT5G40550 AT5G40550
fragaria_vesca	FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240
malus_domestica	MD09G1022400.v1.1 MD17G1021800.v1.1 MD17G1021900.v1.1
prunus_persica	Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1
pyrus_communis	pycom111g01880 pycom17g01900
rosa_chinensis	RchiOBHm_Chr2g0123161
rosa_laevigata	RLG00000018732
rosa_multiflora	Rmu_sc0005573.1_g000008 Rmu_sc0018145.1_g000002
rosa_roxburghii	Rroxscaffold_2G00120870
rosa_rugosa	Rorug02G0243400 Rorug02G0243400 Rorug02G0243500
rosa_samantha	Rh2AG303000 Rh2BG310900 Rh2CG289300 Rh2DG327000
rosa_wichuraiana	Rw0G004900 Rw2G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	68
AccII	CGCG	1 cut(s)	126
AciI	CCGC	4 cut(s)	102, 124, 126, 152
AclWI	GGATC	2 cut(s)	19, 32
AcoI	YGGCCR	1 cut(s)	59
AcsI	RAATTY	2 cut(s)	41, 266
AfiI	CCNNNNNNNGG	1 cut(s)	68
AjnI	CCWGG	2 cut(s)	61, 300
AluBI	AGCT	3 cut(s)	215, 223, 254
AluI	AGCT	3 cut(s)	215, 223, 254
AlwI	GGATC	2 cut(s)	19, 32
AlwNI	CAGNNNCTG	1 cut(s)	68
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	2 cut(s)	120, 212
ApoI	RAATTY	2 cut(s)	41, 266
AsuHPI	GGTGA	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	61
BamHI	GGATCC	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	132, 224
BccI	CCATC	3 cut(s)	14, 51, 142
BcgI	CGANNNNNNTGC	2 cut(s)	81, 115
BciT130I	CCWGG	2 cut(s)	63, 302
BfaI	CTAG	3 cut(s)	50, 336, 343
BisI	GCNGC	3 cut(s)	121, 124, 213
BlsI	GCNGC	3 cut(s)	122, 125, 214
Bme1390I	CCNGG	2 cut(s)	63, 302
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	2 cut(s)	63, 302
BmsI	GCATC	2 cut(s)	102, 107
BpmI	CTGGAG	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	281
BseBI	CCWGG	2 cut(s)	63, 302
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	281
BseXI	GCAGC	2 cut(s)	132, 224
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	68
BsnI	GGCC	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	2 cut(s)	24, 46
BspACI	CCGC	4 cut(s)	102, 124, 126, 152
BspANI	GGCC	1 cut(s)	61
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	26
BspPI	GGATC	2 cut(s)	19, 32
BsrI	ACTGG	1 cut(s)	281
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	24, 46
Bst2UI	CCWGG	2 cut(s)	63, 302
Bst4CI	ACNGT	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	13
BstDSI	CCRYGG	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	117
BstFNI	CGCG	1 cut(s)	126
BstKTI	GATC	2 cut(s)	27, 49
BstMBI	GATC	2 cut(s)	24, 46
BstNI	CCWGG	2 cut(s)	63, 302
BstSCI	CCNGG	2 cut(s)	61, 300
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	132, 224
BstX2I	RGATCY	1 cut(s)	24
BstYI	RGATCY	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	61
BtgI	CCRYGG	1 cut(s)	124
BtgZI	GCGATG	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	117
BtsI	GCAGTG	2 cut(s)	138, 297
BtsIMutI	CAGTG	2 cut(s)	138, 297
Cac8I	GCNNGC	1 cut(s)	13
CaiI	CAGNNNCTG	1 cut(s)	68
Cfr42I	CCGCGG	1 cut(s)	127
CviAII	CATG	2 cut(s)	286, 320
CviJI	RGCY	7 cut(s)	15, 61, 123, 215, 223, 241, 254
CviKI_1	RGCY	7 cut(s)	15, 61, 123, 215, 223, 241, 254
DpnI	GATC	2 cut(s)	26, 48
DpnII	GATC	2 cut(s)	24, 46
EaeI	YGGCCR	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	17
EcoRII	CCWGG	2 cut(s)	61, 300
EcoT38I	GRGCYC	1 cut(s)	17
FaeI	CATG	2 cut(s)	289, 323
FaiI	YATR	6 cut(s)	38, 171, 226, 287, 321, 330
FatI	CATG	2 cut(s)	285, 319
FauI	CCCGC	2 cut(s)	119, 145
Fnu4HI	GCNGC	3 cut(s)	121, 124, 213
FokI	GGATG	1 cut(s)	124
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	3 cut(s)	121, 124, 213
FspBI	CTAG	3 cut(s)	50, 336, 343
GluI	GCNGC	3 cut(s)	121, 124, 213
GsuI	CTGGAG	1 cut(s)	323
HaeIII	GGCC	1 cut(s)	61
Hin1II	CATG	2 cut(s)	289, 323
HinfI	GANTC	2 cut(s)	30, 277
HphI	GGTGA	1 cut(s)	335
Hpy188I	TCNGA	1 cut(s)	29
Hpy188III	TCNNGA	2 cut(s)	50, 184
Hpy99I	CGWCG	1 cut(s)	96
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	3 cut(s)	120, 136, 212
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	289, 323
KspI	CCGCGG	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	24, 46
LpnPI	CCDG	9 cut(s)	30, 48, 54, 75, 169, 247, 287, 294, 314
Lsp1109I	GCAGC	2 cut(s)	132, 224
LweI	GCATC	2 cut(s)	102, 107
MaeI	CTAG	3 cut(s)	50, 336, 343
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	2 cut(s)	26, 48
MboI	GATC	2 cut(s)	24, 46
MfeI	CAATTG	1 cut(s)	207
MflI	RGATCY	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	17
MlsI	TGGCCA	1 cut(s)	61
MluCI	AATT	3 cut(s)	41, 207, 266
MluNI	TGGCCA	1 cut(s)	61
MnlI	CCTC	1 cut(s)	298
Mox20I	TGGCCA	1 cut(s)	61
MscI	TGGCCA	1 cut(s)	61
MslI	CAYNNNNRTG	1 cut(s)	290
Msp20I	TGGCCA	1 cut(s)	61
MspA1I	CMGCKG	1 cut(s)	126
MspR9I	CCNGG	2 cut(s)	63, 302
MunI	CAATTG	1 cut(s)	207
MvaI	CCWGG	2 cut(s)	63, 302
MvnI	CGCG	1 cut(s)	126
NdeII	GATC	2 cut(s)	24, 46
NlaIII	CATG	2 cut(s)	289, 323
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	323
PfeI	GAWTC	2 cut(s)	30, 277
PflMI	CCANNNNNTGG	1 cut(s)	68
PkrI	GCNGC	3 cut(s)	122, 125, 214
Psp6I	CCWGG	2 cut(s)	61, 300
PspGI	CCWGG	2 cut(s)	61, 300
PspN4I	GGNNCC	1 cut(s)	26
PstNI	CAGNNNCTG	1 cut(s)	68
PsuI	RGATCY	1 cut(s)	24
RseI	CAYNNNNRTG	1 cut(s)	290
SacII	CCGCGG	1 cut(s)	127
SatI	GCNGC	3 cut(s)	121, 124, 213
Sau3AI	GATC	2 cut(s)	24, 46
ScrFI	CCNGG	2 cut(s)	63, 302
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	7 cut(s)	67, 142, 195, 217, 225, 256, 303
SfaNI	GCATC	2 cut(s)	102, 107
Sfr303I	CCGCGG	1 cut(s)	127
SgrBI	CCGCGG	1 cut(s)	127
SmiMI	CAYNNNNRTG	1 cut(s)	290
Sse9I	AATT	3 cut(s)	41, 207, 266
SsiI	CCGC	4 cut(s)	102, 124, 126, 152
SspMI	CTAG	3 cut(s)	50, 336, 343
StyD4I	CCNGG	2 cut(s)	61, 300
TaaI	ACNGT	1 cut(s)	96
TaiI	ACGT	1 cut(s)	195
TasI	AATT	3 cut(s)	41, 207, 266
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	2 cut(s)	30, 277
TscAI	CASTG	2 cut(s)	138, 297
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	2 cut(s)	120, 212
Tsp45I	GTSAC	1 cut(s)	323
TspRI	CASTG	2 cut(s)	138, 297
Van91I	CCANNNNNTGG	1 cut(s)	68
XapI	RAATTY	2 cut(s)	41, 266
XbaI	TCTAGA	1 cut(s)	49
XspI	CTAG	3 cut(s)	50, 336, 343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.