Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001979

Physical Location & Seq

Genomic Coordinates Forward (+)

41235325 .. 41238978

Gene Structure 3654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG327000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGATTTTGGTGCAGTCTTGTGTGACAATAAACTTGGTTGTTTTTGAATCCTTCTTTGCATATGCTGACATAGCTCCTGAAGTAGTTGAGAAGCCTGGAGATAGTTCATTGTCGAAGCTGAAGAATTTATATGCTCATGCGAAAGAGCTTTCAGAAAATGAAGTGAATGTTTCAAATTCGTTGTTGGCTCAACTTGATGCTCTAGTGCCTTCTGGACCTCAAGGGCAGCCACGAAGAAGGATAGAAGGTGAGCCGAAAAGGAAGAGAATGAAGAGTGACTCTGAGATTCCAAGGATTTCCCCTGCCCTCCGAAATCAACTTGAGGCCTGTGCCAGTCTAAAAGGTGAACAGGTAGCAGCTAGGGTCACTCCAGAAGATGCTGATAAGGACGAGTGGTTTGTTGTAAAAGTGATCCATTTTGACAAGGACGCAAGAGAATTTGAAGTACTAGATGAGGAGCCTGGTGATGATGAAGAAGGCAGTGGCCAAAGAAAGTACAAGTTGCCTATGTCAGCTATTATTCCTTTCCCCAAGAGAAATGAACCCTCCCCTACCCTAGATTTTCCTACTGGAAGACATGTTTTGGCAGTTTATCCGGGAACAACTGCACTATACAAGGCAACTGTGGTTAATGGTCATCGTAAGAGGAAGACGGATGATTATTTATTGGAATTTGATGATGACGAGGAAGATGGGTCTTTGCCTCAGAGGACAGTGCCCTTCCATAAGGTTGTTGCCCTACCAGAAGGACATCGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051276 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1325

Protein Analysis

253

Amino Acids

28.35

Weight (kDa)

5.29

Isoelectric Point (pI)

57.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SGF29_Tudor	PF07039	114 - 248	5.6e-34	SGF29 tudor-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT5G40550 AT5G40550 AT5G40550 AT5G40550
fragaria_vesca	FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240
malus_domestica	MD09G1022400.v1.1 MD17G1021800.v1.1 MD17G1021900.v1.1
prunus_persica	Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1
pyrus_communis	pycom111g01880 pycom17g01900
rosa_chinensis	RchiOBHm_Chr2g0123161
rosa_laevigata	RLG00000018732
rosa_multiflora	Rmu_sc0005573.1_g000008 Rmu_sc0018145.1_g000002
rosa_roxburghii	Rroxscaffold_2G00120870
rosa_rugosa	Rorug02G0243400 Rorug02G0243400 Rorug02G0243500
rosa_samantha	Rh2AG303000 Rh2BG310900 Rh2CG289300 Rh2DG327000
rosa_wichuraiana	Rw0G004900 Rw2G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	406
AcoI	YGGCCR	1 cut(s)	484
AcsI	RAATTY	4 cut(s)	124, 175, 437, 671
AcuI	CTGAAG	2 cut(s)	99, 140
AfaI	GTAC	2 cut(s)	447, 497
AflIII	ACRYGT	1 cut(s)	577
AgsI	TTSAA	3 cut(s)	47, 174, 443
AjnI	CCWGG	2 cut(s)	94, 460
AluBI	AGCT	5 cut(s)	74, 118, 148, 359, 515
AluI	AGCT	5 cut(s)	74, 118, 148, 359, 515
AlwI	GGATC	1 cut(s)	406
AoxI	GGCC	2 cut(s)	324, 484
ApeKI	GCWGC	2 cut(s)	226, 356
ApoI	RAATTY	4 cut(s)	124, 175, 437, 671
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
AspS9I	GGNCC	1 cut(s)	215
AsuC2I	CCSGG	1 cut(s)	597
AsuHPI	GGTGA	3 cut(s)	260, 356, 476
AvaII	GGWCC	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	720
BalI	TGGCCA	1 cut(s)	486
BbsI	GAAGAC	2 cut(s)	580, 656
BbvI	GCAGC	2 cut(s)	238, 368
BccI	CCATC	1 cut(s)	686
BciT130I	CCWGG	2 cut(s)	96, 462
BcnI	CCSGG	1 cut(s)	597
BfaI	CTAG	4 cut(s)	203, 360, 449, 557
BisI	GCNGC	2 cut(s)	227, 357
BlsI	GCNGC	2 cut(s)	228, 358
BmcAI	AGTACT	1 cut(s)	447
Bme1390I	CCNGG	3 cut(s)	96, 462, 597
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	3 cut(s)	96, 462, 597
BmsI	GCATC	2 cut(s)	187, 367
BpiI	GAAGAC	2 cut(s)	580, 656
BpmI	CTGGAG	2 cut(s)	117, 354
BpuEI	CTTGAG	2 cut(s)	204, 341
BpuMI	CCSGG	1 cut(s)	597
BsaJI	CCNNGG	1 cut(s)	290
Bse1I	ACTGG	3 cut(s)	333, 574, 757
BseBI	CCWGG	2 cut(s)	96, 462
BseDI	CCNNGG	1 cut(s)	290
BseGI	GGATG	1 cut(s)	661
BseMII	CTCAG	2 cut(s)	273, 719
BseNI	ACTGG	3 cut(s)	333, 574, 757
BseRI	GAGGAG	1 cut(s)	470
BseSI	GKGCMC	1 cut(s)	720
BseXI	GCAGC	2 cut(s)	238, 368
BsgI	GTGCAG	2 cut(s)	32, 591
BshFI	GGCC	2 cut(s)	326, 486
BsiSI	CCGG	1 cut(s)	596
BsnI	GGCC	2 cut(s)	326, 486
Bsp1286I	GDGCHC	1 cut(s)	720
Bsp143I	GATC	1 cut(s)	411
BspANI	GGCC	2 cut(s)	326, 486
BspCNI	CTCAG	2 cut(s)	274, 718
BspLI	GGNNCC	1 cut(s)	459
BspPI	GGATC	1 cut(s)	406
BsrI	ACTGG	3 cut(s)	333, 574, 757
BssECI	CCNNGG	1 cut(s)	290
BssMI	GATC	1 cut(s)	411
BssT1I	CCWWGG	1 cut(s)	290
Bst2UI	CCWGG	2 cut(s)	96, 462
Bst4CI	ACNGT	2 cut(s)	625, 715
Bst6I	CTCTTC	2 cut(s)	257, 266
BstDEI	CTNAG	2 cut(s)	282, 705
BstF5I	GGATG	1 cut(s)	661
BstKTI	GATC	1 cut(s)	414
BstMBI	GATC	1 cut(s)	411
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNI	CCWGG	2 cut(s)	96, 462
BstNSI	RCATGY	1 cut(s)	581
BstSCI	CCNGG	3 cut(s)	94, 460, 595
BstSLI	GKGCMC	1 cut(s)	720
BstV1I	GCAGC	2 cut(s)	238, 368
BstV2I	GAAGAC	2 cut(s)	580, 656
BsuRI	GGCC	2 cut(s)	326, 486
BtgZI	GCGATG	1 cut(s)	737
BtsCI	GGATG	1 cut(s)	661
BtsI	GCAGTG	1 cut(s)	487
BtsIMutI	CAGTG	2 cut(s)	487, 720
Cfr13I	GGNCC	1 cut(s)	215
CseI	GACGC	1 cut(s)	437
Csp6I	GTAC	2 cut(s)	446, 496
CviAII	CATG	2 cut(s)	137, 578
CviQI	GTAC	2 cut(s)	446, 496
DdeI	CTNAG	2 cut(s)	282, 705
DpnI	GATC	1 cut(s)	413
DpnII	GATC	1 cut(s)	411
EaeI	YGGCCR	1 cut(s)	484
Eam1104I	CTCTTC	2 cut(s)	257, 266
EarI	CTCTTC	2 cut(s)	257, 266
Eco130I	CCWWGG	1 cut(s)	290
Eco147I	AGGCCT	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	215
Eco57I	CTGAAG	2 cut(s)	99, 140
EcoRII	CCWGG	2 cut(s)	94, 460
EcoT14I	CCWWGG	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	290
FaeI	CATG	2 cut(s)	140, 581
FatI	CATG	2 cut(s)	136, 577
FauNDI	CATATG	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	227, 357
FokI	GGATG	1 cut(s)	668
Fsp4HI	GCNGC	2 cut(s)	227, 357
FspBI	CTAG	4 cut(s)	203, 360, 449, 557
GluI	GCNGC	2 cut(s)	227, 357
GsuI	CTGGAG	2 cut(s)	117, 354
HaeIII	GGCC	2 cut(s)	326, 486
HapII	CCGG	1 cut(s)	596
HgaI	GACGC	1 cut(s)	437
Hin1II	CATG	2 cut(s)	140, 581
HinfI	GANTC	3 cut(s)	47, 278, 286
HpaII	CCGG	1 cut(s)	596
HphI	GGTGA	3 cut(s)	260, 356, 476
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	4 cut(s)	154, 283, 311, 708
Hpy188III	TCNNGA	3 cut(s)	77, 213, 371
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	7 cut(s)	61, 219, 231, 239, 470, 730, 740
HpyCH4III	ACNGT	2 cut(s)	625, 715
HpyCH4V	TGCA	3 cut(s)	13, 59, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	2 cut(s)	282, 705
Hsp92II	CATG	2 cut(s)	140, 581
Kzo9I	GATC	1 cut(s)	411
LmnI	GCTCC	2 cut(s)	79, 457
Lsp1109I	GCAGC	2 cut(s)	238, 368
LweI	GCATC	2 cut(s)	187, 367
MaeI	CTAG	4 cut(s)	203, 360, 449, 557
MaeIII	GTNAC	3 cut(s)	22, 275, 364
MalI	GATC	1 cut(s)	413
MboI	GATC	1 cut(s)	411
MboII	GAAGA	9 cut(s)	133, 246, 274, 283, 386, 485, 585, 661, 701
MhlI	GDGCHC	1 cut(s)	720
MlsI	TGGCCA	1 cut(s)	486
MluCI	AATT	4 cut(s)	124, 175, 437, 671
MluNI	TGGCCA	1 cut(s)	486
MlyI	GAGTC	1 cut(s)	272
MnlI	CCTC	9 cut(s)	228, 316, 317, 448, 556, 639, 679, 702, 714
Mox20I	TGGCCA	1 cut(s)	486
MscI	TGGCCA	1 cut(s)	486
MseI	TTAA	1 cut(s)	630
Msp20I	TGGCCA	1 cut(s)	486
MspI	CCGG	1 cut(s)	596
MspR9I	CCNGG	3 cut(s)	96, 462, 597
MvaI	CCWGG	2 cut(s)	96, 462
MwoI	GCNNNNNNNGC	1 cut(s)	71
NciI	CCSGG	1 cut(s)	597
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	1 cut(s)	411
NlaIII	CATG	2 cut(s)	140, 581
NlaIV	GGNNCC	1 cut(s)	459
NmuCI	GTSAC	3 cut(s)	22, 275, 364
NspI	RCATGY	1 cut(s)	581
PceI	AGGCCT	1 cut(s)	326
PciI	ACATGT	1 cut(s)	577
PfeI	GAWTC	2 cut(s)	47, 286
PfoI	TCCNGGA	1 cut(s)	595
PkrI	GCNGC	2 cut(s)	228, 358
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
PscI	ACATGT	1 cut(s)	577
Psp6I	CCWGG	2 cut(s)	94, 460
PspGI	CCWGG	2 cut(s)	94, 460
PspN4I	GGNNCC	1 cut(s)	459
PspPI	GGNCC	1 cut(s)	215
RsaI	GTAC	2 cut(s)	447, 497
RsaNI	GTAC	2 cut(s)	446, 496
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	2 cut(s)	227, 357
Sau3AI	GATC	1 cut(s)	411
Sau96I	GGNCC	1 cut(s)	215
ScaI	AGTACT	1 cut(s)	447
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	3 cut(s)	96, 462, 597
SduI	GDGCHC	1 cut(s)	720
SfaNI	GCATC	2 cut(s)	187, 367
SinI	GGWCC	1 cut(s)	215
SmlI	CTYRAG	2 cut(s)	219, 320
SmoI	CTYRAG	2 cut(s)	219, 320
Sse9I	AATT	4 cut(s)	124, 175, 437, 671
SseBI	AGGCCT	1 cut(s)	326
SspMI	CTAG	4 cut(s)	203, 360, 449, 557
StuI	AGGCCT	1 cut(s)	326
StyD4I	CCNGG	3 cut(s)	94, 460, 595
StyI	CCWWGG	1 cut(s)	290
TaaI	ACNGT	2 cut(s)	625, 715
TaqI	TCGA	1 cut(s)	113
TasI	AATT	4 cut(s)	124, 175, 437, 671
TatI	WGTACW	2 cut(s)	445, 495
TfiI	GAWTC	2 cut(s)	47, 286
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TscAI	CASTG	2 cut(s)	487, 720
TseFI	GTSAC	3 cut(s)	22, 275, 364
TseI	GCWGC	2 cut(s)	226, 356
Tsp45I	GTSAC	3 cut(s)	22, 275, 364
TspDTI	ATGAA	5 cut(s)	96, 174, 284, 486, 555
TspGWI	ACGGA	1 cut(s)	668
TspRI	CASTG	2 cut(s)	487, 720
VpaK11BI	GGWCC	1 cut(s)	215
XapI	RAATTY	4 cut(s)	124, 175, 437, 671
XceI	RCATGY	1 cut(s)	581
XspI	CTAG	4 cut(s)	203, 360, 449, 557
ZrmI	AGTACT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.