Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001979

Physical Location & Seq

Genomic Coordinates Reverse (-)

1625155 .. 1628091

Gene Structure 2937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1021900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTCAGCGCCGGACATTGCAGGAATACTGGAAAAGTCGAAAGAGCTCGATCAATTAAGGAAAGAGCATGAAGAGGTGCTCATCGAGATAAACAAGATGCATAAGAAGCTCCAAGCTACTCCTGAAGTGGTTGAGAAGCCTGGGGATAATTCATTGTCGAAGCTGAAGAATTTATATGTGCATGCCAAAGAACTTTCTGAAAGTGAAGTAACTGTATTCAATTTGTTGTTGAGCCAACTTGATGCTCTATTGCCTTCTGGACCTCCAGGGCAGCCACGAAGAAGGATGGAAGGTAATGAGCAGAAAAGGAAGAGGATGAAGACTAATTCAGACATTTCAAGGATTTCCCCTTTCATGCGAAGTCAACTCGAGGCTTGGGCTAGTCTGAAAGGAGAACATGTAGCAGCTAGGGTTACGGTCACTCAAGAAGATGCTGACAAGGATGAGTGGTTTGTTGTAAAAGTGATGCATTTTGACAAGGATACAAGAGAATTTGAAGTACTAGATGAGGAGCTGGGTGATGATGAAGAGGGTGGTGTCCAAAGAAAGTACAAGTTGCCTATGAGCGCTATTATCCCTTTCCCAAAGGGAAGCGATCCTTCCAGTGCTATAGATTTCCCTACTGGAAGACCTGTTTTGGCTGTATATCCAGGAGCAACTGCACTGTACAAGGCAACTGTGGTGAATGGCCATCGCAAGACGGATGATTATTTGTTGGAATTCGATGACGACGAGGAAGACGGATCCTTGCCTCAGAGGACAGTGCCCTTCCATAAGGTGATTGCCCTGCCGGAAGGCCATCGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051276 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1325

Protein Analysis

270

Amino Acids

30.37

Weight (kDa)

5.39

Isoelectric Point (pI)

53.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SGF29_Tudor	PF07039	130 - 264	9.3e-31	SGF29 tudor-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT5G40550 AT5G40550 AT5G40550 AT5G40550
fragaria_vesca	FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240
malus_domestica	MD09G1022400.v1.1 MD17G1021800.v1.1 MD17G1021900.v1.1
prunus_persica	Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1
pyrus_communis	pycom111g01880 pycom17g01900
rosa_chinensis	RchiOBHm_Chr2g0123161
rosa_laevigata	RLG00000018732
rosa_multiflora	Rmu_sc0005573.1_g000008 Rmu_sc0018145.1_g000002
rosa_roxburghii	Rroxscaffold_2G00120870
rosa_rugosa	Rorug02G0243400 Rorug02G0243400 Rorug02G0243500
rosa_samantha	Rh2AG303000 Rh2BG310900 Rh2CG289300 Rh2DG327000
rosa_wichuraiana	Rw0G004900 Rw2G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	590, 738, 751
AcoI	YGGCCR	1 cut(s)	688
AcsI	RAATTY	3 cut(s)	169, 491, 719
AcuI	CTGAAG	2 cut(s)	144, 185
AfaI	GTAC	3 cut(s)	501, 551, 668
AfeI	AGCGCT	1 cut(s)	568
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	3 cut(s)	220, 339, 497
AjnI	CCWGG	3 cut(s)	139, 265, 649
AluBI	AGCT	6 cut(s)	46, 109, 116, 163, 407, 514
AluI	AGCT	6 cut(s)	46, 109, 116, 163, 407, 514
Alw21I	GWGCWC	2 cut(s)	48, 81
AlwI	GGATC	3 cut(s)	590, 738, 751
Ama87I	CYCGRG	1 cut(s)	368
Aor51HI	AGCGCT	1 cut(s)	568
AoxI	GGCC	2 cut(s)	688, 796
ApeKI	GCWGC	2 cut(s)	271, 404
ApoI	RAATTY	3 cut(s)	169, 491, 719
AspLEI	GCGC	2 cut(s)	10, 569
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	3 cut(s)	530, 694, 790
AvaI	CYCGRG	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	768
BalI	TGGCCA	1 cut(s)	690
BamHI	GGATCC	1 cut(s)	743
BanII	GRGCYC	1 cut(s)	48
BbsI	GAAGAC	3 cut(s)	326, 634, 744
Bbv12I	GWGCWC	2 cut(s)	48, 81
BbvI	GCAGC	2 cut(s)	283, 416
BccI	CCATC	3 cut(s)	280, 699, 807
BciT130I	CCWGG	3 cut(s)	141, 267, 651
BciVI	GTATCC	1 cut(s)	475
BfaI	CTAG	3 cut(s)	381, 408, 503
BfmI	CTRYAG	1 cut(s)	609
BfoI	RGCGCY	2 cut(s)	11, 570
BfuI	GTATCC	1 cut(s)	475
BisI	GCNGC	2 cut(s)	272, 405
BlsI	GCNGC	2 cut(s)	273, 406
BmcAI	AGTACT	1 cut(s)	501
Bme1390I	CCNGG	3 cut(s)	141, 267, 651
Bme18I	GGWCC	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	745
BmrFI	CCNGG	3 cut(s)	141, 267, 651
BmsI	GCATC	4 cut(s)	87, 232, 421, 456
BpiI	GAAGAC	3 cut(s)	326, 634, 744
BpmI	CTGGAG	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	408
BsaJI	CCNNGG	2 cut(s)	140, 266
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bse1I	ACTGG	4 cut(s)	33, 603, 628, 805
Bse3DI	GCAATG	1 cut(s)	15
BseBI	CCWGG	3 cut(s)	141, 267, 651
BseDI	CCNNGG	2 cut(s)	140, 266
BseGI	GGATG	4 cut(s)	291, 321, 448, 709
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	767
BseNI	ACTGG	4 cut(s)	33, 603, 628, 805
BseRI	GAGGAG	1 cut(s)	524
BseSI	GKGCMC	1 cut(s)	768
BseXI	GCAGC	2 cut(s)	283, 416
BseYI	CCCAGC	1 cut(s)	514
BsgI	GTGCAG	1 cut(s)	645
BshFI	GGCC	2 cut(s)	690, 798
BsiHKAI	GWGCWC	2 cut(s)	48, 81
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	2 cut(s)	11, 791
BsnI	GGCC	2 cut(s)	690, 798
BsoBI	CYCGRG	1 cut(s)	368
Bsp1286I	GDGCHC	3 cut(s)	48, 81, 768
Bsp1407I	TGTACA	1 cut(s)	666
Bsp143I	GATC	3 cut(s)	49, 595, 743
BspANI	GGCC	2 cut(s)	690, 798
BspCNI	CTCAG	1 cut(s)	766
BspLI	GGNNCC	1 cut(s)	745
BspPI	GGATC	3 cut(s)	590, 738, 751
BsrDI	GCAATG	1 cut(s)	15
BsrGI	TGTACA	1 cut(s)	666
BsrI	ACTGG	4 cut(s)	33, 603, 628, 805
BssECI	CCNNGG	2 cut(s)	140, 266
BssMI	GATC	3 cut(s)	49, 595, 743
Bst2UI	CCWGG	3 cut(s)	141, 267, 651
Bst4CI	ACNGT	5 cut(s)	214, 418, 666, 679, 763
Bst6I	CTCTTC	3 cut(s)	66, 305, 522
BstAUI	TGTACA	1 cut(s)	666
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	753
BstF5I	GGATG	4 cut(s)	291, 321, 448, 709
BstH2I	RGCGCY	2 cut(s)	11, 570
BstHHI	GCGC	2 cut(s)	10, 569
BstKTI	GATC	3 cut(s)	52, 598, 746
BstMBI	GATC	3 cut(s)	49, 595, 743
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNI	CCWGG	3 cut(s)	141, 267, 651
BstNSI	RCATGY	2 cut(s)	185, 401
BstSCI	CCNGG	3 cut(s)	139, 265, 649
BstSFI	CTRYAG	1 cut(s)	609
BstSLI	GKGCMC	1 cut(s)	768
BstV1I	GCAGC	2 cut(s)	283, 416
BstV2I	GAAGAC	3 cut(s)	326, 634, 744
BstX2I	RGATCY	1 cut(s)	743
BstYI	RGATCY	1 cut(s)	743
BsuI	GTATCC	1 cut(s)	475
BsuRI	GGCC	2 cut(s)	690, 798
BtgZI	GCGATG	2 cut(s)	677, 785
BtsCI	GGATG	4 cut(s)	291, 321, 448, 709
BtsIMutI	CAGTG	3 cut(s)	610, 662, 768
Cac8I	GCNNGC	1 cut(s)	183
CfoI	GCGC	2 cut(s)	10, 569
Cfr13I	GGNCC	1 cut(s)	260
Csp6I	GTAC	3 cut(s)	500, 550, 667
CviAII	CATG	4 cut(s)	68, 182, 355, 398
CviQI	GTAC	3 cut(s)	500, 550, 667
DdeI	CTNAG	1 cut(s)	753
DpnI	GATC	3 cut(s)	51, 597, 745
DpnII	GATC	3 cut(s)	49, 595, 743
EaeI	YGGCCR	1 cut(s)	688
Eam1104I	CTCTTC	3 cut(s)	66, 305, 522
EarI	CTCTTC	3 cut(s)	66, 305, 522
Ecl136II	GAGCTC	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	260
Eco47III	AGCGCT	1 cut(s)	568
Eco53kI	GAGCTC	1 cut(s)	46
Eco57I	CTGAAG	2 cut(s)	144, 185
Eco88I	CYCGRG	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	46
EcoRI	GAATTC	1 cut(s)	719
EcoRII	CCWGG	3 cut(s)	139, 265, 649
EcoT22I	ATGCAT	2 cut(s)	102, 471
EcoT38I	GRGCYC	1 cut(s)	48
FaeI	CATG	4 cut(s)	71, 185, 358, 401
FalI	AAGNNNNNCTT	2 cut(s)	583, 615
FatI	CATG	4 cut(s)	67, 181, 354, 397
Fnu4HI	GCNGC	2 cut(s)	272, 405
FokI	GGATG	4 cut(s)	298, 328, 455, 716
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	2 cut(s)	272, 405
FspBI	CTAG	3 cut(s)	381, 408, 503
GlaI	GCGC	2 cut(s)	9, 568
GluI	GCNGC	2 cut(s)	272, 405
GsaI	CCCAGC	1 cut(s)	518
GsuI	CTGGAG	1 cut(s)	249
HaeII	RGCGCY	2 cut(s)	11, 570
HaeIII	GGCC	2 cut(s)	690, 798
HapII	CCGG	2 cut(s)	11, 791
HhaI	GCGC	2 cut(s)	10, 569
Hin1II	CATG	4 cut(s)	71, 185, 358, 401
Hin6I	GCGC	2 cut(s)	8, 567
HinP1I	GCGC	2 cut(s)	8, 567
HincII	GTYRAC	1 cut(s)	365
HindII	GTYRAC	1 cut(s)	365
HpaII	CCGG	2 cut(s)	11, 791
HphI	GGTGA	3 cut(s)	530, 694, 790
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188I	TCNGA	4 cut(s)	199, 331, 387, 756
Hpy188III	TCNNGA	4 cut(s)	85, 122, 258, 425
Hpy8I	GTNNAC	1 cut(s)	365
Hpy99I	CGWCG	1 cut(s)	734
HpyAV	CCTTC	6 cut(s)	264, 276, 284, 609, 778, 788
HpyCH4III	ACNGT	5 cut(s)	214, 418, 666, 679, 763
HpyCH4V	TGCA	5 cut(s)	20, 100, 181, 469, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	1 cut(s)	753
Hsp92II	CATG	4 cut(s)	71, 185, 358, 401
HspAI	GCGC	2 cut(s)	8, 567
Kzo9I	GATC	3 cut(s)	49, 595, 743
LmnI	GCTCC	3 cut(s)	114, 511, 653
Lsp1109I	GCAGC	2 cut(s)	283, 416
LweI	GCATC	4 cut(s)	87, 232, 421, 456
MaeI	CTAG	3 cut(s)	381, 408, 503
MaeIII	GTNAC	3 cut(s)	208, 412, 418
MalI	GATC	3 cut(s)	51, 597, 745
MboI	GATC	3 cut(s)	49, 595, 743
MboII	GAAGA	9 cut(s)	83, 178, 291, 322, 331, 440, 539, 639, 749
MflI	RGATCY	1 cut(s)	743
MhlI	GDGCHC	3 cut(s)	48, 81, 768
MlsI	TGGCCA	1 cut(s)	690
MluCI	AATT	7 cut(s)	53, 148, 169, 220, 325, 491, 719
MluNI	TGGCCA	1 cut(s)	690
MmeI	TCCRAC	1 cut(s)	696
MnlI	CCTC	9 cut(s)	67, 273, 306, 364, 502, 523, 727, 750, 762
Mox20I	TGGCCA	1 cut(s)	690
Mph1103I	ATGCAT	2 cut(s)	102, 471
MscI	TGGCCA	1 cut(s)	690
MseI	TTAA	1 cut(s)	56
Msp20I	TGGCCA	1 cut(s)	690
MspI	CCGG	2 cut(s)	11, 791
MspR9I	CCNGG	3 cut(s)	141, 267, 651
MvaI	CCWGG	3 cut(s)	141, 267, 651
MwoI	GCNNNNNNNGC	1 cut(s)	106
NdeII	GATC	3 cut(s)	49, 595, 743
NlaIII	CATG	4 cut(s)	71, 185, 358, 401
NlaIV	GGNNCC	1 cut(s)	745
NmuCI	GTSAC	1 cut(s)	418
NsiI	ATGCAT	2 cut(s)	102, 471
NspI	RCATGY	2 cut(s)	185, 401
PaeI	GCATGC	1 cut(s)	185
PaeR7I	CTCGAG	1 cut(s)	368
PciI	ACATGT	1 cut(s)	397
PcsI	WCGNNNNNNNCGW	1 cut(s)	729
PfoI	TCCNGGA	1 cut(s)	649
PkrI	GCNGC	2 cut(s)	273, 406
PscI	ACATGT	1 cut(s)	397
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	3 cut(s)	139, 265, 649
PspFI	CCCAGC	1 cut(s)	514
PspGI	CCWGG	3 cut(s)	139, 265, 649
PspN4I	GGNNCC	1 cut(s)	745
PspPI	GGNCC	1 cut(s)	260
PspXI	VCTCGAGB	1 cut(s)	368
PsuI	RGATCY	1 cut(s)	743
RsaI	GTAC	3 cut(s)	501, 551, 668
RsaNI	GTAC	3 cut(s)	500, 550, 667
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	2 cut(s)	272, 405
Sau3AI	GATC	3 cut(s)	49, 595, 743
Sau96I	GGNCC	1 cut(s)	260
ScaI	AGTACT	1 cut(s)	501
ScrFI	CCNGG	3 cut(s)	141, 267, 651
SduI	GDGCHC	3 cut(s)	48, 81, 768
SfaNI	GCATC	4 cut(s)	87, 232, 421, 456
SfcI	CTRYAG	1 cut(s)	609
Sfr274I	CTCGAG	1 cut(s)	368
SinI	GGWCC	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	368
SmlI	CTYRAG	2 cut(s)	368, 423
SmoI	CTYRAG	2 cut(s)	368, 423
SphI	GCATGC	1 cut(s)	185
Sse9I	AATT	7 cut(s)	53, 148, 169, 220, 325, 491, 719
SspMI	CTAG	3 cut(s)	381, 408, 503
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	3 cut(s)	139, 265, 649
TaaI	ACNGT	5 cut(s)	214, 418, 666, 679, 763
TaqI	TCGA	6 cut(s)	38, 48, 84, 158, 369, 723
TasI	AATT	7 cut(s)	53, 148, 169, 220, 325, 491, 719
TatI	WGTACW	3 cut(s)	499, 549, 666
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	3 cut(s)	610, 669, 768
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	2 cut(s)	271, 404
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	5 cut(s)	84, 141, 332, 343, 540
TspGWI	ACGGA	2 cut(s)	716, 756
TspRI	CASTG	3 cut(s)	610, 669, 768
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	3 cut(s)	169, 491, 719
XceI	RCATGY	2 cut(s)	185, 401
XhoI	CTCGAG	1 cut(s)	368
XspI	CTAG	3 cut(s)	381, 408, 503
ZrmI	AGTACT	1 cut(s)	501
Zsp2I	ATGCAT	2 cut(s)	102, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.