Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001979

Physical Location & Seq

Genomic Coordinates Reverse (-)

53322579 .. 53325966

Gene Structure 3388 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00120870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTCGACACCGGATATTGCAGGAATACTGGACAAGTCGAAAGAGCTTGATCAGTTGAGAAAAGAGCAAGAAGACGTGCTCGTTGAGATCAACAAGATGCATAAGAAGCTCCAAACCACTCCTGAAGTAGTTGAGAAGCCTGGAGATAGTTCATTGTCGAAGCTGAAGAATTTATATGCTCATGCGAAAGAGCTTTCAGAAAATGAAGTGACTGTTTCAAATTCGTTGTTGGTTCAACTTGATGCTCTATTGCCTTCTGGACCTCAAGGGCAGCCACGAAGAAGGATAGAAGGTGAGCCGAAAAGGAAGAGAATGAAGAGTGACTCTGAGATTCCAAGGATTTCTCCTGCCCTCCGAAATGAACTTGAGGCCTGTGCCAGTCTAAAAGGTGAACAGGTAGCAGCTAGGGTCACTCCAGAAGATGCTGATAAGGATGAGTGGTTTGTTGTAAAAGTGATCCATTTTGACAAGGACGCAAGAGAATTTGAAGTACTAGATGAGGAGCCTGGTGATGATGAAGAAGGCAGTGGCCAAAGAAAGTACAAGTTGCCTATGTCAGCTATTATTCCTTTCCCCAAGAGAAATGAACCCTCCCCTACCCCAGATTTTCCTACTGGAAAACATGTTTTGGCAGTTTATCCGGGAACAACTGCACTATACAAGGCAACTGTGGTTAATGGTCATCGTAAGAATTTAATATCTGATGCAGTTATTTATTGGAATTTGATGATGACGAGGAAGATGGGTCTTTGCCTCAGAGGACAGTGCCCTTCCACAAGGTTGTTGCCCTACCACAAGGACATCGCCAGTGAATTTTTCCCTCAATTCAAGATTGTTGGGGTATCACCCAGTCTAATATCCAGCAAGTTGAATTCAATCATCCATCACGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051276 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1325

Protein Analysis

297

Amino Acids

33.33

Weight (kDa)

7.1

Isoelectric Point (pI)

54.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SGF29_Tudor	PF07039	129 - 229	2.8e-26	SGF29 tudor-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT5G40550 AT5G40550 AT5G40550 AT5G40550
fragaria_vesca	FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240
malus_domestica	MD09G1022400.v1.1 MD17G1021800.v1.1 MD17G1021900.v1.1
prunus_persica	Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1
pyrus_communis	pycom111g01880 pycom17g01900
rosa_chinensis	RchiOBHm_Chr2g0123161
rosa_laevigata	RLG00000018732
rosa_multiflora	Rmu_sc0005573.1_g000008 Rmu_sc0018145.1_g000002
rosa_roxburghii	Rroxscaffold_2G00120870
rosa_rugosa	Rorug02G0243400 Rorug02G0243400 Rorug02G0243500
rosa_samantha	Rh2AG303000 Rh2BG310900 Rh2CG289300 Rh2DG327000
rosa_wichuraiana	Rw0G004900 Rw2G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	451
AcoI	YGGCCR	1 cut(s)	529
AcsI	RAATTY	7 cut(s)	169, 220, 482, 691, 721, 812, 871
AcuI	CTGAAG	2 cut(s)	144, 185
AfaI	GTAC	2 cut(s)	492, 542
AflIII	ACRYGT	1 cut(s)	622
AgsI	TTSAA	6 cut(s)	219, 236, 488, 829, 871, 876
AjiI	CACGTC	1 cut(s)	76
AjnI	CCWGG	2 cut(s)	139, 505
AluBI	AGCT	6 cut(s)	46, 109, 163, 193, 404, 560
AluI	AGCT	6 cut(s)	46, 109, 163, 193, 404, 560
Alw21I	GWGCWC	1 cut(s)	81
AlwI	GGATC	1 cut(s)	451
AoxI	GGCC	2 cut(s)	369, 529
ApeKI	GCWGC	2 cut(s)	271, 401
ApoI	RAATTY	7 cut(s)	169, 220, 482, 691, 721, 812, 871
AspS9I	GGNCC	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	642
AsuHPI	GGTGA	4 cut(s)	305, 401, 521, 837
AvaII	GGWCC	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	770
BalI	TGGCCA	1 cut(s)	531
BbsI	GAAGAC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	283, 413
BccI	CCATC	2 cut(s)	736, 891
BciT130I	CCWGG	2 cut(s)	141, 507
BclI	TGATCA	1 cut(s)	49
BcnI	CCSGG	1 cut(s)	642
BfaI	CTAG	2 cut(s)	405, 494
BisI	GCNGC	2 cut(s)	272, 402
BlsI	GCNGC	2 cut(s)	273, 403
BmcAI	AGTACT	1 cut(s)	492
Bme1390I	CCNGG	3 cut(s)	141, 507, 642
Bme18I	GGWCC	1 cut(s)	260
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	504
BmrFI	CCNGG	3 cut(s)	141, 507, 642
BmrI	ACTGGG	1 cut(s)	843
BmsI	GCATC	4 cut(s)	87, 232, 412, 694
BmuI	ACTGGG	1 cut(s)	843
BpiI	GAAGAC	1 cut(s)	78
BpmI	CTGGAG	2 cut(s)	162, 399
BpuEI	CTTGAG	2 cut(s)	249, 386
BpuMI	CCSGG	1 cut(s)	642
BsaJI	CCNNGG	1 cut(s)	335
BsaWI	WCCGGW	1 cut(s)	10
Bse1I	ACTGG	5 cut(s)	33, 378, 619, 807, 849
BseBI	CCWGG	2 cut(s)	141, 507
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	2 cut(s)	439, 879
BseMII	CTCAG	2 cut(s)	318, 769
BseNI	ACTGG	5 cut(s)	33, 378, 619, 807, 849
BseRI	GAGGAG	1 cut(s)	515
BseSI	GKGCMC	1 cut(s)	770
BseXI	GCAGC	2 cut(s)	283, 413
BsgI	GTGCAG	1 cut(s)	636
BshFI	GGCC	2 cut(s)	371, 531
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	2 cut(s)	11, 641
BsnI	GGCC	2 cut(s)	371, 531
Bsp1286I	GDGCHC	2 cut(s)	81, 770
Bsp143I	GATC	3 cut(s)	49, 87, 456
BspANI	GGCC	2 cut(s)	371, 531
BspCNI	CTCAG	2 cut(s)	319, 768
BspLI	GGNNCC	1 cut(s)	504
BspPI	GGATC	1 cut(s)	451
BsrI	ACTGG	5 cut(s)	33, 378, 619, 807, 849
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	3 cut(s)	49, 87, 456
BssT1I	CCWWGG	1 cut(s)	335
Bst2UI	CCWGG	2 cut(s)	141, 507
Bst4CI	ACNGT	3 cut(s)	214, 670, 765
Bst6I	CTCTTC	2 cut(s)	302, 311
BstDEI	CTNAG	2 cut(s)	327, 755
BstF5I	GGATG	2 cut(s)	439, 879
BstKTI	GATC	3 cut(s)	52, 90, 459
BstMBI	GATC	3 cut(s)	49, 87, 456
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNI	CCWGG	2 cut(s)	141, 507
BstNSI	RCATGY	1 cut(s)	626
BstSCI	CCNGG	3 cut(s)	139, 505, 640
BstSLI	GKGCMC	1 cut(s)	770
BstV1I	GCAGC	2 cut(s)	283, 413
BstV2I	GAAGAC	1 cut(s)	78
BsuRI	GGCC	2 cut(s)	371, 531
BtgZI	GCGATG	1 cut(s)	787
BtrI	CACGTC	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	439, 879
BtsI	GCAGTG	1 cut(s)	532
BtsIMutI	CAGTG	3 cut(s)	532, 770, 814
Cfr13I	GGNCC	1 cut(s)	260
CseI	GACGC	1 cut(s)	482
Csp6I	GTAC	2 cut(s)	491, 541
CviAII	CATG	2 cut(s)	182, 623
CviQI	GTAC	2 cut(s)	491, 541
DdeI	CTNAG	2 cut(s)	327, 755
DpnI	GATC	3 cut(s)	51, 89, 458
DpnII	GATC	3 cut(s)	49, 87, 456
EaeI	YGGCCR	1 cut(s)	529
Eam1104I	CTCTTC	2 cut(s)	302, 311
EarI	CTCTTC	2 cut(s)	302, 311
Eco130I	CCWWGG	1 cut(s)	335
Eco147I	AGGCCT	1 cut(s)	371
Eco47I	GGWCC	1 cut(s)	260
Eco57I	CTGAAG	2 cut(s)	144, 185
EcoRI	GAATTC	1 cut(s)	871
EcoRII	CCWGG	2 cut(s)	139, 505
EcoT14I	CCWWGG	1 cut(s)	335
EcoT22I	ATGCAT	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	2 cut(s)	185, 626
FaiI	YATR	7 cut(s)	102, 175, 177, 183, 554, 624, 658
FatI	CATG	2 cut(s)	181, 622
FbaI	TGATCA	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	272, 402
FokI	GGATG	2 cut(s)	446, 866
Fsp4HI	GCNGC	2 cut(s)	272, 402
FspBI	CTAG	2 cut(s)	405, 494
GluI	GCNGC	2 cut(s)	272, 402
GsuI	CTGGAG	2 cut(s)	162, 399
HaeIII	GGCC	2 cut(s)	371, 531
HapII	CCGG	2 cut(s)	11, 641
HgaI	GACGC	1 cut(s)	482
Hin1II	CATG	2 cut(s)	185, 626
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	323, 331
HpaII	CCGG	2 cut(s)	11, 641
HphI	GGTGA	4 cut(s)	305, 401, 521, 837
Hpy166II	GTNNAC	2 cut(s)	6, 392
Hpy188I	TCNGA	5 cut(s)	199, 328, 356, 703, 758
Hpy188III	TCNNGA	4 cut(s)	122, 258, 416, 829
Hpy8I	GTNNAC	2 cut(s)	6, 392
HpyAV	CCTTC	5 cut(s)	264, 276, 284, 515, 780
HpyCH4III	ACNGT	3 cut(s)	214, 670, 765
HpyCH4IV	ACGT	2 cut(s)	75, 888
HpyCH4V	TGCA	4 cut(s)	20, 100, 653, 707
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	2 cut(s)	327, 755
HpySE526I	ACGT	2 cut(s)	75, 888
Hsp92II	CATG	2 cut(s)	185, 626
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	49, 87, 456
LmnI	GCTCC	2 cut(s)	114, 502
Lsp1109I	GCAGC	2 cut(s)	283, 413
LweI	GCATC	4 cut(s)	87, 232, 412, 694
MaeI	CTAG	2 cut(s)	405, 494
MaeII	ACGT	2 cut(s)	75, 888
MaeIII	GTNAC	3 cut(s)	208, 320, 409
MalI	GATC	3 cut(s)	51, 89, 458
MboI	GATC	3 cut(s)	49, 87, 456
MboII	GAAGA	8 cut(s)	83, 178, 291, 319, 328, 431, 530, 751
MhlI	GDGCHC	2 cut(s)	81, 770
MlsI	TGGCCA	1 cut(s)	531
MluCI	AATT	8 cut(s)	169, 220, 482, 691, 721, 812, 824, 871
MluNI	TGGCCA	1 cut(s)	531
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	9 cut(s)	273, 361, 362, 493, 601, 729, 752, 764, 831
Mox20I	TGGCCA	1 cut(s)	531
Mph1103I	ATGCAT	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	531
MseI	TTAA	2 cut(s)	675, 695
Msp20I	TGGCCA	1 cut(s)	531
MspI	CCGG	2 cut(s)	11, 641
MspR9I	CCNGG	3 cut(s)	141, 507, 642
MvaI	CCWGG	2 cut(s)	141, 507
MwoI	GCNNNNNNNGC	1 cut(s)	106
NciI	CCSGG	1 cut(s)	642
NdeII	GATC	3 cut(s)	49, 87, 456
NlaIII	CATG	2 cut(s)	185, 626
NlaIV	GGNNCC	1 cut(s)	504
NmuCI	GTSAC	3 cut(s)	208, 320, 409
NsiI	ATGCAT	1 cut(s)	102
NspI	RCATGY	1 cut(s)	626
PceI	AGGCCT	1 cut(s)	371
PciI	ACATGT	1 cut(s)	622
PfeI	GAWTC	1 cut(s)	331
PfoI	TCCNGGA	1 cut(s)	640
PkrI	GCNGC	2 cut(s)	273, 403
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
PscI	ACATGT	1 cut(s)	622
Psp6I	CCWGG	2 cut(s)	139, 505
PspGI	CCWGG	2 cut(s)	139, 505
PspN4I	GGNNCC	1 cut(s)	504
PspPI	GGNCC	1 cut(s)	260
RsaI	GTAC	2 cut(s)	492, 542
RsaNI	GTAC	2 cut(s)	491, 541
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	675, 695
SatI	GCNGC	2 cut(s)	272, 402
Sau3AI	GATC	3 cut(s)	49, 87, 456
Sau96I	GGNCC	1 cut(s)	260
ScaI	AGTACT	1 cut(s)	492
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	3 cut(s)	141, 507, 642
SduI	GDGCHC	2 cut(s)	81, 770
SfaNI	GCATC	4 cut(s)	87, 232, 412, 694
SinI	GGWCC	1 cut(s)	260
SmlI	CTYRAG	2 cut(s)	264, 365
SmoI	CTYRAG	2 cut(s)	264, 365
Sse9I	AATT	8 cut(s)	169, 220, 482, 691, 721, 812, 824, 871
SseBI	AGGCCT	1 cut(s)	371
SspMI	CTAG	2 cut(s)	405, 494
StuI	AGGCCT	1 cut(s)	371
StyD4I	CCNGG	3 cut(s)	139, 505, 640
StyI	CCWWGG	1 cut(s)	335
TaaI	ACNGT	3 cut(s)	214, 670, 765
TaiI	ACGT	2 cut(s)	78, 891
TaqI	TCGA	3 cut(s)	5, 38, 158
TasI	AATT	8 cut(s)	169, 220, 482, 691, 721, 812, 824, 871
TatI	WGTACW	2 cut(s)	490, 540
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	2 cut(s)	675, 695
Tru9I	TTAA	2 cut(s)	675, 695
TscAI	CASTG	3 cut(s)	532, 770, 814
TseFI	GTSAC	3 cut(s)	208, 320, 409
TseI	GCWGC	2 cut(s)	271, 401
Tsp45I	GTSAC	3 cut(s)	208, 320, 409
TspDTI	ATGAA	6 cut(s)	141, 219, 329, 375, 531, 600
TspRI	CASTG	3 cut(s)	532, 770, 814
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	7 cut(s)	169, 220, 482, 691, 721, 812, 871
XceI	RCATGY	1 cut(s)	626
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	2 cut(s)	405, 494
ZrmI	AGTACT	1 cut(s)	492
Zsp2I	ATGCAT	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.