Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001979

Physical Location & Seq

Genomic Coordinates Forward (+)

34719740 .. 34723488

Gene Structure 3749 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018732

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGTCGACACCAGATATTGCAGGAATACTGGACAAGTCGAAAGAGCTTGATCAGTTGAGGAAAGAGCAAGAAGAAGTGCTCATTGAGATCAACAAGATGCATAAGAAGCTCCAAACCACTCCTGAAGTAGTTGAGAAGCCTGGAGATAGTTCATTGTCAAAGCTGAAGAATTTATATGCTCATGCGAAAGAGCTTTCAGAAAATGAAGTGAGTGTTTCAAATTCGTTGTTGGTTCAACTTGATGCTCTAGTGCCTTCTGGACCTCAGGGGCAGCCACGAAGAAGGATAGAAGGCGAGCCGAAAAGGAAGAGAATGAAGAGTGACTCTGAGATTCCAAGGATTTCCCCTGCCGTCCGAAATCAACTTGAGGCCTGTGCCAGTCTAAAAGGTGAACAGGTAGCAGCTAGGGTCACTCCAGAAGATGCTGATAAGGACGAGTGGTTTGTTGTAAAAGTGATCCATTTTGACAAGGACGCAAGAGAATTTGAAGTTTTAGATGAGGAGCCTGGTGATGATGAAGAAGGCAGTGGCCAAAGAAAGTACAAGTTGCCTATGTCAGCTATTATTCCTTTCCCCAAGAGAAATGAACCCTCCCCTACCCTAGATTTTCCTACTGGAAGACATGTTTTGGCAGTTTATCCGGGAACAACTGCACTATACAAGGCAACTGTGGTTAATGGTCATCGTAAGAGGAAGACGGATGATTATTTATTGGAATTTGATGATGACGAGGAAGATGGGTCTTTGCCTAAGAGGACAGTGCCCTTCCATAAGGTTGTTGCCCTACCAGAAGGACATCGCCATCGAATCAGTCTTGATGGTCCAGGATTTAACTATAAGAATTTGACGTCAGTAAGAAAACAGTGGCCAAGAGCAGATCTGCCTATGGTTGACCCTGCTAATCTGTCCGTAGGGGCACAGGCATCCACATATGTAATTGCTGTTTCTGGGAGTTCAGCTCTTGGTTTGATGACTGTCCCAGAGCTGCATGTGTGGTACTATGGCCATGTCGTTTTACATAACACAGTGCAGGTTAAAGATTGCGGAATAGCTTCACTGGCAAGCAACCAATTGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051276 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1325

Protein Analysis

360

Amino Acids

40.0

Weight (kDa)

5.93

Isoelectric Point (pI)

50.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SGF29_Tudor	PF07039	129 - 263	1.9e-33	SGF29 tudor-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT5G40550 AT5G40550 AT5G40550 AT5G40550
fragaria_vesca	FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240
malus_domestica	MD09G1022400.v1.1 MD17G1021800.v1.1 MD17G1021900.v1.1
prunus_persica	Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1
pyrus_communis	pycom111g01880 pycom17g01900
rosa_chinensis	RchiOBHm_Chr2g0123161
rosa_laevigata	RLG00000018732
rosa_multiflora	Rmu_sc0005573.1_g000008 Rmu_sc0018145.1_g000002
rosa_roxburghii	Rroxscaffold_2G00120870
rosa_rugosa	Rorug02G0243400 Rorug02G0243400 Rorug02G0243500
rosa_samantha	Rh2AG303000 Rh2BG310900 Rh2CG289300 Rh2DG327000
rosa_wichuraiana	Rw0G004900 Rw2G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	851
Acc36I	ACCTGC	1 cut(s)	1021
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	1044
AclWI	GGATC	1 cut(s)	451
AcoI	YGGCCR	3 cut(s)	529, 866, 1003
AcsI	RAATTY	5 cut(s)	169, 220, 482, 716, 841
AcuI	CTGAAG	2 cut(s)	144, 185
AcyI	GRCGYC	1 cut(s)	848
AfaI	GTAC	2 cut(s)	542, 998
AflIII	ACRYGT	1 cut(s)	622
AgsI	TTSAA	3 cut(s)	219, 236, 488
AjnI	CCWGG	3 cut(s)	139, 505, 823
AluBI	AGCT	9 cut(s)	46, 109, 163, 193, 404, 560, 959, 985, 1052
AluI	AGCT	9 cut(s)	46, 109, 163, 193, 404, 560, 959, 985, 1052
Alw21I	GWGCWC	1 cut(s)	81
AlwI	GGATC	1 cut(s)	451
AoxI	GGCC	4 cut(s)	369, 529, 866, 1003
ApeKI	GCWGC	3 cut(s)	271, 401, 985
ApoI	RAATTY	5 cut(s)	169, 220, 482, 716, 841
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
Asp700I	GAANNNNTTC	1 cut(s)	1051
AspS9I	GGNCC	2 cut(s)	260, 821
AsuC2I	CCSGG	1 cut(s)	642
AsuHPI	GGTGA	2 cut(s)	401, 521
AvaII	GGWCC	2 cut(s)	260, 821
AxyI	CCTNAGG	1 cut(s)	264
BaeGI	GKGCMC	2 cut(s)	765, 919
BalI	TGGCCA	3 cut(s)	531, 868, 1005
BbsI	GAAGAC	2 cut(s)	625, 701
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	3 cut(s)	283, 413, 972
BccI	CCATC	3 cut(s)	731, 810, 812
BceAI	ACGGC	1 cut(s)	335
BciT130I	CCWGG	3 cut(s)	141, 507, 825
BclI	TGATCA	1 cut(s)	49
BcnI	CCSGG	1 cut(s)	642
BfaI	CTAG	4 cut(s)	248, 405, 602, 1078
BfuAI	ACCTGC	1 cut(s)	1021
BglII	AGATCT	1 cut(s)	877
BisI	GCNGC	3 cut(s)	272, 402, 986
BlsI	GCNGC	3 cut(s)	273, 403, 987
Bme1390I	CCNGG	4 cut(s)	141, 507, 642, 825
Bme18I	GGWCC	2 cut(s)	260, 821
BmgT120I	GGNCC	2 cut(s)	260, 821
BmiI	GGNNCC	1 cut(s)	504
BmrFI	CCNGG	4 cut(s)	141, 507, 642, 825
BmsI	GCATC	4 cut(s)	87, 232, 412, 932
BpiI	GAAGAC	2 cut(s)	625, 701
BplI	GAGNNNNNCTC	2 cut(s)	943, 975
BpmI	CTGGAG	2 cut(s)	162, 399
BpuEI	CTTGAG	1 cut(s)	386
BpuMI	CCSGG	1 cut(s)	642
BsaHI	GRCGYC	1 cut(s)	848
BsaJI	CCNNGG	1 cut(s)	335
Bse1I	ACTGG	4 cut(s)	33, 378, 619, 1062
Bse21I	CCTNAGG	1 cut(s)	264
BseBI	CCWGG	3 cut(s)	141, 507, 825
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	2 cut(s)	706, 923
BseMII	CTCAG	2 cut(s)	278, 318
BseNI	ACTGG	4 cut(s)	33, 378, 619, 1062
BseRI	GAGGAG	1 cut(s)	515
BseSI	GKGCMC	2 cut(s)	765, 919
BseXI	GCAGC	3 cut(s)	283, 413, 972
BsgI	GTGCAG	2 cut(s)	636, 1049
BshFI	GGCC	4 cut(s)	371, 531, 868, 1005
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	641
BslFI	GGGAC	1 cut(s)	962
BsmFI	GGGAC	1 cut(s)	962
BsnI	GGCC	4 cut(s)	371, 531, 868, 1005
Bsp1286I	GDGCHC	3 cut(s)	81, 765, 919
Bsp143I	GATC	4 cut(s)	49, 87, 456, 877
BspACI	CCGC	1 cut(s)	1044
BspANI	GGCC	4 cut(s)	371, 531, 868, 1005
BspCNI	CTCAG	2 cut(s)	277, 319
BspLI	GGNNCC	1 cut(s)	504
BspMI	ACCTGC	1 cut(s)	1021
BspPI	GGATC	1 cut(s)	451
BsrI	ACTGG	4 cut(s)	33, 378, 619, 1062
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	4 cut(s)	49, 87, 456, 877
BssNI	GRCGYC	1 cut(s)	848
BssT1I	CCWWGG	1 cut(s)	335
Bst2UI	CCWGG	3 cut(s)	141, 507, 825
Bst4CI	ACNGT	5 cut(s)	670, 760, 864, 976, 1027
Bst6I	CTCTTC	2 cut(s)	302, 311
BstACI	GRCGYC	1 cut(s)	848
BstC8I	GCNNGC	2 cut(s)	296, 1063
BstDEI	CTNAG	3 cut(s)	264, 327, 750
BstF5I	GGATG	2 cut(s)	706, 923
BstKTI	GATC	4 cut(s)	52, 90, 459, 880
BstMBI	GATC	4 cut(s)	49, 87, 456, 877
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 1058
BstNI	CCWGG	3 cut(s)	141, 507, 825
BstNSI	RCATGY	2 cut(s)	626, 992
BstSCI	CCNGG	4 cut(s)	139, 505, 640, 823
BstSLI	GKGCMC	2 cut(s)	765, 919
BstV1I	GCAGC	3 cut(s)	283, 413, 972
BstV2I	GAAGAC	2 cut(s)	625, 701
BstX2I	RGATCY	1 cut(s)	877
BstYI	RGATCY	1 cut(s)	877
Bsu36I	CCTNAGG	1 cut(s)	264
BsuRI	GGCC	4 cut(s)	371, 531, 868, 1005
BtgZI	GCGATG	1 cut(s)	782
BtsCI	GGATG	2 cut(s)	706, 923
BtsI	GCAGTG	1 cut(s)	532
BtsIMutI	CAGTG	5 cut(s)	532, 765, 869, 1032, 1055
BveI	ACCTGC	1 cut(s)	1021
Cac8I	GCNNGC	2 cut(s)	296, 1063
Cfr13I	GGNCC	2 cut(s)	260, 821
CseI	GACGC	1 cut(s)	482
Csp6I	GTAC	2 cut(s)	541, 997
CviAII	CATG	4 cut(s)	182, 623, 989, 1007
CviQI	GTAC	2 cut(s)	541, 997
DdeI	CTNAG	3 cut(s)	264, 327, 750
DpnI	GATC	4 cut(s)	51, 89, 458, 879
DpnII	GATC	4 cut(s)	49, 87, 456, 877
EaeI	YGGCCR	3 cut(s)	529, 866, 1003
Eam1104I	CTCTTC	2 cut(s)	302, 311
EarI	CTCTTC	2 cut(s)	302, 311
Eco130I	CCWWGG	1 cut(s)	335
Eco147I	AGGCCT	1 cut(s)	371
Eco47I	GGWCC	2 cut(s)	260, 821
Eco57I	CTGAAG	2 cut(s)	144, 185
Eco81I	CCTNAGG	1 cut(s)	264
EcoRII	CCWGG	3 cut(s)	139, 505, 823
EcoT14I	CCWWGG	1 cut(s)	335
EcoT22I	ATGCAT	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	4 cut(s)	185, 626, 992, 1010
FaqI	GGGAC	1 cut(s)	962
FatI	CATG	4 cut(s)	181, 622, 988, 1006
FauNDI	CATATG	1 cut(s)	931
FbaI	TGATCA	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	272, 402, 986
FokI	GGATG	2 cut(s)	713, 910
Fsp4HI	GCNGC	3 cut(s)	272, 402, 986
FspBI	CTAG	4 cut(s)	248, 405, 602, 1078
GluI	GCNGC	3 cut(s)	272, 402, 986
GsuI	CTGGAG	2 cut(s)	162, 399
HaeIII	GGCC	4 cut(s)	371, 531, 868, 1005
HapII	CCGG	1 cut(s)	641
HgaI	GACGC	1 cut(s)	482
Hin1I	GRCGYC	1 cut(s)	848
Hin1II	CATG	4 cut(s)	185, 626, 992, 1010
HincII	GTYRAC	2 cut(s)	6, 892
HindII	GTYRAC	2 cut(s)	6, 892
HinfI	GANTC	3 cut(s)	323, 331, 807
HpaII	CCGG	1 cut(s)	641
HphI	GGTGA	2 cut(s)	401, 521
Hpy166II	GTNNAC	3 cut(s)	6, 392, 892
Hpy188I	TCNGA	3 cut(s)	199, 328, 356
Hpy188III	TCNNGA	4 cut(s)	122, 258, 416, 815
Hpy8I	GTNNAC	3 cut(s)	6, 392, 892
HpyAV	CCTTC	6 cut(s)	264, 276, 284, 515, 775, 785
HpyCH4III	ACNGT	5 cut(s)	670, 760, 864, 976, 1027
HpyCH4IV	ACGT	1 cut(s)	848
HpyCH4V	TGCA	5 cut(s)	20, 100, 653, 988, 1030
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 1058
HpyF3I	CTNAG	3 cut(s)	264, 327, 750
HpySE526I	ACGT	1 cut(s)	848
Hsp92I	GRCGYC	1 cut(s)	848
Hsp92II	CATG	4 cut(s)	185, 626, 992, 1010
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	4 cut(s)	49, 87, 456, 877
LmnI	GCTCC	2 cut(s)	114, 502
Lsp1109I	GCAGC	3 cut(s)	283, 413, 972
LweI	GCATC	4 cut(s)	87, 232, 412, 932
MaeI	CTAG	4 cut(s)	248, 405, 602, 1078
MaeII	ACGT	1 cut(s)	848
MaeIII	GTNAC	2 cut(s)	320, 409
MalI	GATC	4 cut(s)	51, 89, 458, 879
MboI	GATC	4 cut(s)	49, 87, 456, 877
MfeI	CAATTG	1 cut(s)	1070
MflI	RGATCY	1 cut(s)	877
MhlI	GDGCHC	3 cut(s)	81, 765, 919
MlsI	TGGCCA	3 cut(s)	531, 868, 1005
MluCI	AATT	7 cut(s)	169, 220, 482, 716, 841, 936, 1070
MluNI	TGGCCA	3 cut(s)	531, 868, 1005
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	8 cut(s)	51, 273, 361, 493, 601, 684, 724, 747
Mox20I	TGGCCA	3 cut(s)	531, 868, 1005
Mph1103I	ATGCAT	1 cut(s)	102
MroXI	GAANNNNTTC	1 cut(s)	1051
MscI	TGGCCA	3 cut(s)	531, 868, 1005
MseI	TTAA	3 cut(s)	675, 831, 1035
Msp20I	TGGCCA	3 cut(s)	531, 868, 1005
MspI	CCGG	1 cut(s)	641
MspR9I	CCNGG	4 cut(s)	141, 507, 642, 825
MunI	CAATTG	1 cut(s)	1070
MvaI	CCWGG	3 cut(s)	141, 507, 825
MwoI	GCNNNNNNNGC	2 cut(s)	106, 1058
NciI	CCSGG	1 cut(s)	642
NdeI	CATATG	1 cut(s)	931
NdeII	GATC	4 cut(s)	49, 87, 456, 877
NlaIII	CATG	4 cut(s)	185, 626, 992, 1010
NlaIV	GGNNCC	1 cut(s)	504
NmuCI	GTSAC	2 cut(s)	320, 409
NsiI	ATGCAT	1 cut(s)	102
NspI	RCATGY	2 cut(s)	626, 992
PceI	AGGCCT	1 cut(s)	371
PciI	ACATGT	1 cut(s)	622
PdmI	GAANNNNTTC	1 cut(s)	1051
PfeI	GAWTC	2 cut(s)	331, 807
PfoI	TCCNGGA	2 cut(s)	640, 823
PkrI	GCNGC	3 cut(s)	273, 403, 987
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
PscI	ACATGT	1 cut(s)	622
Psp6I	CCWGG	3 cut(s)	139, 505, 823
PspGI	CCWGG	3 cut(s)	139, 505, 823
PspN4I	GGNNCC	1 cut(s)	504
PspPI	GGNCC	2 cut(s)	260, 821
PsuI	RGATCY	1 cut(s)	877
RsaI	GTAC	2 cut(s)	542, 998
RsaNI	GTAC	2 cut(s)	541, 997
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	3 cut(s)	675, 831, 1035
SatI	GCNGC	3 cut(s)	272, 402, 986
Sau3AI	GATC	4 cut(s)	49, 87, 456, 877
Sau96I	GGNCC	2 cut(s)	260, 821
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	4 cut(s)	141, 507, 642, 825
SduI	GDGCHC	3 cut(s)	81, 765, 919
SfaNI	GCATC	4 cut(s)	87, 232, 412, 932
SinI	GGWCC	2 cut(s)	260, 821
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	7 cut(s)	169, 220, 482, 716, 841, 936, 1070
SseBI	AGGCCT	1 cut(s)	371
SsiI	CCGC	1 cut(s)	1044
SspMI	CTAG	4 cut(s)	248, 405, 602, 1078
StuI	AGGCCT	1 cut(s)	371
StyD4I	CCNGG	4 cut(s)	139, 505, 640, 823
StyI	CCWWGG	1 cut(s)	335
TaaI	ACNGT	5 cut(s)	670, 760, 864, 976, 1027
TaiI	ACGT	1 cut(s)	851
TaqI	TCGA	3 cut(s)	5, 38, 805
TasI	AATT	7 cut(s)	169, 220, 482, 716, 841, 936, 1070
TatI	WGTACW	1 cut(s)	540
TfiI	GAWTC	2 cut(s)	331, 807
Tru1I	TTAA	3 cut(s)	675, 831, 1035
Tru9I	TTAA	3 cut(s)	675, 831, 1035
TscAI	CASTG	5 cut(s)	532, 765, 869, 1032, 1062
TseFI	GTSAC	2 cut(s)	320, 409
TseI	GCWGC	3 cut(s)	271, 401, 985
Tsp45I	GTSAC	2 cut(s)	320, 409
TspDTI	ATGAA	5 cut(s)	141, 219, 329, 531, 600
TspGWI	ACGGA	2 cut(s)	713, 898
TspRI	CASTG	5 cut(s)	532, 765, 869, 1032, 1062
VpaK11BI	GGWCC	2 cut(s)	260, 821
XapI	RAATTY	5 cut(s)	169, 220, 482, 716, 841
XceI	RCATGY	2 cut(s)	626, 992
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	1051
XspI	CTAG	4 cut(s)	248, 405, 602, 1078
ZraI	GACGTC	1 cut(s)	849
Zsp2I	ATGCAT	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.