Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001979

Physical Location & Seq

Genomic Coordinates Forward (+)

16241009 .. 16243410

Gene Structure 2402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G40550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTCGTCACCAGACATTGTCGGAATTTTGGAAAACACGAAGGAACTTGATCGGTTAAGGAAAGACCAAGAAGAAGTTTTGGTTGAGATCAATAAGATGCATAAAAAGCTTCAAGCTTCTCCTGAGATAGTTGAGAAGCCTGGTGATATTTCATTAGCAAAGCTTAAGAATTTGTACATTCAAGCGAAAGAGCTCTCAGAAAATGAAGTAACCGTATCGAACATTTTGCTTACTCAGTTGGATTTGCTGCTTCCATATGGACCAACAGGGCAGCAAAGAAGAAAGTTAGGCGTGGTGGCAGAAGGTAATGATCAGAAGAGGAAGAGGATGAAAGTTGATTCAGATGTAATAAGACTTTCTCCTTCCATGAGAAATCAAATCGAAGCATATGCAAGTCTTAAGGGTGAACAGGTTGCTGCAAGAGTTACTGCAGAGAGTGCTGATAAGGATGAATGGTTTGTGGTTAAAGTTATTCACTTCGATAGAGAAACAAAAGAAGTTGAAGTACTTGATGAAGAACCAGGAGATGATGAAGAAGGAAGCGGTCAGAGGACCTATAAGTTGCCAATGTTATGCATTTTACCATTCCCAAAGCGAAACGATCCTTCGAACACCCAAGAGTTTCCACCGGGTAAACACGTCTTAGCTGTATATCCCGGGACAACAGCACTCTACAAAGCAACTGTAGTAAGTACCCCACGAAAGAGGAAGTCTGACGAGTATTTGCTTGAATTCGACGATGATGAGGAAGATGGAGCATTGCCTCAAAGAACAGTACCTTTCCACAAAGTGGTAGCTTTACCAGAAGGTCATCGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051276 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1325

Protein Analysis

273

Amino Acids

30.88

Weight (kDa)

5.36

Isoelectric Point (pI)

51.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SGF29_Tudor	PF07039	131 - 265	8.2e-33	SGF29 tudor-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT5G40550 AT5G40550 AT5G40550 AT5G40550
fragaria_vesca	FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240
malus_domestica	MD09G1022400.v1.1 MD17G1021800.v1.1 MD17G1021900.v1.1
prunus_persica	Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1
pyrus_communis	pycom111g01880 pycom17g01900
rosa_chinensis	RchiOBHm_Chr2g0123161
rosa_laevigata	RLG00000018732
rosa_multiflora	Rmu_sc0005573.1_g000008 Rmu_sc0018145.1_g000002
rosa_roxburghii	Rroxscaffold_2G00120870
rosa_rugosa	Rorug02G0243400 Rorug02G0243400 Rorug02G0243500
rosa_samantha	Rh2AG303000 Rh2BG310900 Rh2CG289300 Rh2DG327000
rosa_wichuraiana	Rw0G004900 Rw2G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	790
AciI	CCGC	1 cut(s)	543
AclWI	GGATC	1 cut(s)	596
AcsI	RAATTY	3 cut(s)	24, 169, 731
AdeI	CACNNNGTG	1 cut(s)	790
AfaI	GTAC	4 cut(s)	176, 507, 694, 777
AfiI	CCNNNNNNNGG	1 cut(s)	790
AflII	CTTAAG	2 cut(s)	164, 398
AflIII	ACRYGT	1 cut(s)	637
AgsI	TTSAA	4 cut(s)	113, 182, 503, 731
AjiI	CACGTC	1 cut(s)	640
AjnI	CCWGG	2 cut(s)	139, 520
AluBI	AGCT	6 cut(s)	109, 116, 163, 193, 647, 797
AluI	AGCT	6 cut(s)	109, 116, 163, 193, 647, 797
Alw21I	GWGCWC	1 cut(s)	195
AlwI	GGATC	1 cut(s)	596
Ama87I	CYCGRG	1 cut(s)	656
ApeKI	GCWGC	3 cut(s)	247, 271, 416
ApoI	RAATTY	3 cut(s)	24, 169, 731
AspS9I	GGNCC	2 cut(s)	260, 552
AsuC2I	CCSGG	3 cut(s)	630, 657, 658
AsuHPI	GGTGA	2 cut(s)	155, 416
AsuII	TTCGAA	1 cut(s)	608
AvaI	CYCGRG	1 cut(s)	656
AvaII	GGWCC	2 cut(s)	260, 552
BanII	GRGCYC	1 cut(s)	195
BarI	GAAGNNNNNNTAC	2 cut(s)	489, 521
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	3 cut(s)	234, 283, 403
BccI	CCATC	1 cut(s)	746
BcgI	CGANNNNNNTGC	4 cut(s)	208, 242, 371, 405
BciT130I	CCWGG	2 cut(s)	141, 522
BclI	TGATCA	1 cut(s)	310
BcnI	CCSGG	3 cut(s)	630, 657, 658
BfmI	CTRYAG	2 cut(s)	429, 684
BfrI	CTTAAG	2 cut(s)	164, 398
BisI	GCNGC	3 cut(s)	248, 272, 417
BlsI	GCNGC	3 cut(s)	249, 273, 418
BmcAI	AGTACT	1 cut(s)	507
Bme1390I	CCNGG	5 cut(s)	141, 522, 630, 657, 658
Bme18I	GGWCC	2 cut(s)	260, 552
BmeT110I	CYCGRG	1 cut(s)	656
BmgBI	CACGTC	1 cut(s)	640
BmgT120I	GGNCC	2 cut(s)	260, 552
BmrFI	CCNGG	5 cut(s)	141, 522, 630, 657, 658
BmsI	GCATC	1 cut(s)	87
Bpu14I	TTCGAA	1 cut(s)	608
BpuMI	CCSGG	3 cut(s)	630, 657, 658
BsaJI	CCNNGG	1 cut(s)	656
Bsc4I	CCNNNNNNNGG	1 cut(s)	790
Bse1I	ACTGG	1 cut(s)	817
Bse3DI	GCAATG	1 cut(s)	758
BseBI	CCWGG	2 cut(s)	141, 522
BseDI	CCNNGG	1 cut(s)	656
BseGI	GGATG	2 cut(s)	333, 454
BseLI	CCNNNNNNNGG	1 cut(s)	790
BseMI	GCAATG	1 cut(s)	758
BseMII	CTCAG	3 cut(s)	114, 210, 248
BseNI	ACTGG	1 cut(s)	817
BseXI	GCAGC	3 cut(s)	234, 283, 403
BsiHKAI	GWGCWC	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	656
BsiSI	CCGG	2 cut(s)	629, 657
BslFI	GGGAC	1 cut(s)	673
BslI	CCNNNNNNNGG	1 cut(s)	790
BsmFI	GGGAC	1 cut(s)	673
BsoBI	CYCGRG	1 cut(s)	656
Bsp119I	TTCGAA	1 cut(s)	608
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	4 cut(s)	49, 87, 310, 601
BspACI	CCGC	1 cut(s)	543
BspCNI	CTCAG	3 cut(s)	115, 209, 247
BspMAI	CTGCAG	1 cut(s)	433
BspPI	GGATC	1 cut(s)	596
BspT104I	TTCGAA	1 cut(s)	608
BspTI	CTTAAG	2 cut(s)	164, 398
BsrDI	GCAATG	1 cut(s)	758
BsrGI	TGTACA	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	817
BssECI	CCNNGG	1 cut(s)	656
BssMI	GATC	4 cut(s)	49, 87, 310, 601
Bst2UI	CCWGG	2 cut(s)	141, 522
Bst4CI	ACNGT	3 cut(s)	214, 685, 775
Bst6I	CTCTTC	2 cut(s)	311, 317
BstAFI	CTTAAG	2 cut(s)	164, 398
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstAUI	TGTACA	1 cut(s)	174
BstBI	TTCGAA	1 cut(s)	608
BstDEI	CTNAG	4 cut(s)	123, 196, 234, 643
BstF5I	GGATG	2 cut(s)	333, 454
BstKTI	GATC	4 cut(s)	52, 90, 313, 604
BstMBI	GATC	4 cut(s)	49, 87, 310, 601
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 437
BstNI	CCWGG	2 cut(s)	141, 522
BstSCI	CCNGG	5 cut(s)	139, 520, 628, 655, 656
BstSFI	CTRYAG	2 cut(s)	429, 684
BstV1I	GCAGC	3 cut(s)	234, 283, 403
BtgZI	GCGATG	1 cut(s)	797
BtrI	CACGTC	1 cut(s)	640
BtsCI	GGATG	2 cut(s)	333, 454
Cfr13I	GGNCC	2 cut(s)	260, 552
Cfr9I	CCCGGG	1 cut(s)	656
Csp6I	GTAC	4 cut(s)	175, 506, 693, 776
CviAII	CATG	1 cut(s)	367
CviJI	RGCY	7 cut(s)	109, 116, 139, 163, 193, 647, 797
CviKI_1	RGCY	7 cut(s)	109, 116, 139, 163, 193, 647, 797
CviQI	GTAC	4 cut(s)	175, 506, 693, 776
DdeI	CTNAG	4 cut(s)	123, 196, 234, 643
DpnI	GATC	4 cut(s)	51, 89, 312, 603
DpnII	GATC	4 cut(s)	49, 87, 310, 601
DraIII	CACNNNGTG	1 cut(s)	790
Eam1104I	CTCTTC	2 cut(s)	311, 317
EarI	CTCTTC	2 cut(s)	311, 317
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	195
Eco47I	GGWCC	2 cut(s)	260, 552
Eco53kI	GAGCTC	1 cut(s)	193
Eco88I	CYCGRG	1 cut(s)	656
EcoICRI	GAGCTC	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	552
EcoRI	GAATTC	1 cut(s)	731
EcoRII	CCWGG	2 cut(s)	139, 520
EcoT22I	ATGCAT	2 cut(s)	102, 578
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	1 cut(s)	370
FaiI	YATR	9 cut(s)	102, 256, 258, 368, 388, 390, 558, 574, 652
FaqI	GGGAC	1 cut(s)	673
FatI	CATG	1 cut(s)	366
FauNDI	CATATG	2 cut(s)	256, 388
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	3 cut(s)	248, 272, 417
FokI	GGATG	2 cut(s)	340, 461
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	3 cut(s)	248, 272, 417
GluI	GCNGC	3 cut(s)	248, 272, 417
HapII	CCGG	2 cut(s)	629, 657
Hin1II	CATG	1 cut(s)	370
HindIII	AAGCTT	3 cut(s)	107, 114, 161
HinfI	GANTC	1 cut(s)	338
HpaII	CCGG	2 cut(s)	629, 657
HphI	GGTGA	2 cut(s)	155, 416
Hpy166II	GTNNAC	2 cut(s)	407, 635
Hpy188I	TCNGA	6 cut(s)	23, 199, 315, 343, 549, 715
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	2 cut(s)	407, 635
Hpy99I	CGWCG	1 cut(s)	740
HpyAV	CCTTC	6 cut(s)	34, 296, 372, 530, 615, 800
HpyCH4III	ACNGT	3 cut(s)	214, 685, 775
HpyCH4IV	ACGT	1 cut(s)	639
HpyCH4V	TGCA	5 cut(s)	100, 392, 419, 431, 576
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 437
HpyF3I	CTNAG	4 cut(s)	123, 196, 234, 643
HpySE526I	ACGT	1 cut(s)	639
Hsp92II	CATG	1 cut(s)	370
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	4 cut(s)	49, 87, 310, 601
LmnI	GCTCC	1 cut(s)	755
Lsp1109I	GCAGC	3 cut(s)	234, 283, 403
LweI	GCATC	1 cut(s)	87
MaeII	ACGT	1 cut(s)	639
MaeIII	GTNAC	3 cut(s)	6, 208, 424
MalI	GATC	4 cut(s)	51, 89, 312, 603
MboI	GATC	4 cut(s)	49, 87, 310, 601
MboII	GAAGA	7 cut(s)	83, 291, 328, 334, 527, 545, 761
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	3 cut(s)	24, 169, 731
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	6 cut(s)	312, 318, 543, 699, 739, 774
Mph1103I	ATGCAT	2 cut(s)	102, 578
MseI	TTAA	4 cut(s)	56, 165, 399, 465
MspCI	CTTAAG	2 cut(s)	164, 398
MspI	CCGG	2 cut(s)	629, 657
MspR9I	CCNGG	5 cut(s)	141, 522, 630, 657, 658
MvaI	CCWGG	2 cut(s)	141, 522
MwoI	GCNNNNNNNGC	2 cut(s)	106, 437
NciI	CCSGG	3 cut(s)	630, 657, 658
NdeI	CATATG	2 cut(s)	256, 388
NdeII	GATC	4 cut(s)	49, 87, 310, 601
NlaIII	CATG	1 cut(s)	370
NmuCI	GTSAC	1 cut(s)	6
NsiI	ATGCAT	2 cut(s)	102, 578
NspV	TTCGAA	1 cut(s)	608
PfeI	GAWTC	1 cut(s)	338
PflFI	GACNNNGTC	1 cut(s)	17
PflMI	CCANNNNNTGG	1 cut(s)	790
PkrI	GCNGC	3 cut(s)	249, 273, 418
PpuMI	RGGWCCY	1 cut(s)	552
Psp124BI	GAGCTC	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	552
Psp6I	CCWGG	2 cut(s)	139, 520
PspGI	CCWGG	2 cut(s)	139, 520
PspPI	GGNCC	2 cut(s)	260, 552
PspPPI	RGGWCCY	1 cut(s)	552
PstI	CTGCAG	1 cut(s)	433
PsyI	GACNNNGTC	1 cut(s)	17
RsaI	GTAC	4 cut(s)	176, 507, 694, 777
RsaNI	GTAC	4 cut(s)	175, 506, 693, 776
SacI	GAGCTC	1 cut(s)	195
SaqAI	TTAA	4 cut(s)	56, 165, 399, 465
SatI	GCNGC	3 cut(s)	248, 272, 417
Sau3AI	GATC	4 cut(s)	49, 87, 310, 601
Sau96I	GGNCC	2 cut(s)	260, 552
ScaI	AGTACT	1 cut(s)	507
ScrFI	CCNGG	5 cut(s)	141, 522, 630, 657, 658
SduI	GDGCHC	1 cut(s)	195
SfaNI	GCATC	1 cut(s)	87
SfcI	CTRYAG	2 cut(s)	429, 684
SfuI	TTCGAA	1 cut(s)	608
SinI	GGWCC	2 cut(s)	260, 552
SmaI	CCCGGG	1 cut(s)	658
SmlI	CTYRAG	2 cut(s)	164, 398
SmoI	CTYRAG	2 cut(s)	164, 398
Sse9I	AATT	3 cut(s)	24, 169, 731
SsiI	CCGC	1 cut(s)	543
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	5 cut(s)	139, 520, 628, 655, 656
TaaI	ACNGT	3 cut(s)	214, 685, 775
TaiI	ACGT	1 cut(s)	642
TaqI	TCGA	5 cut(s)	218, 381, 480, 608, 735
TasI	AATT	3 cut(s)	24, 169, 731
TatI	WGTACW	2 cut(s)	174, 505
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	4 cut(s)	56, 165, 399, 465
Tru9I	TTAA	4 cut(s)	56, 165, 399, 465
TseFI	GTSAC	1 cut(s)	6
TseI	GCWGC	3 cut(s)	247, 271, 416
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	6 cut(s)	141, 219, 344, 465, 528, 546
TspMI	CCCGGG	1 cut(s)	656
Tth111I	GACNNNGTC	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	790
Vha464I	CTTAAG	2 cut(s)	164, 398
VpaK11BI	GGWCC	2 cut(s)	260, 552
XapI	RAATTY	3 cut(s)	24, 169, 731
XmaI	CCCGGG	1 cut(s)	656
ZrmI	AGTACT	1 cut(s)	507
Zsp2I	ATGCAT	2 cut(s)	102, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.