Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001979

Physical Location & Seq

Genomic Coordinates Forward (+)

26257501 .. 26261275

Gene Structure 3775 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G294200.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTCATCGCCAGACATTGCAGGAATACTGGACAAGTCAAAAGAGCTCGATCAATTAAGGAAAGAGCAAGAAGAGGTGCTCACCGAGATAAACAAGATGCATAAGAAGCTCCAAGCCACTCCTGAAGTGGTTGAGAAGCCTGGGGATAATGCGTTGGCGAAGCTGAAGGCTTTATATGTTCATGCCAAAGAGCTCTCTGAAAAGGAAATGAATGTTTCAAATTTGTTGTTGAGTCAACTTGATGCTCTGTTGCCTTCTGGACCTCCAGGGCAGCCACGGAGAAGGATGGAAGGTAATGAGCAGAAAAGGAAGAGAATGAAGAATGATTCAGATATTTCGAGGATGTCCCCCTCCGTGCGAAGTCAACTCGAGCTTTTTGCTAGTCTAAAAGGTGAACAGGTGGCGGCTAGGGTCATGGTCACTCAAGAAGATGCTGAAAAGGAAGAGTGGCTTGTTGTAAAAGTTTTGCATTTCGACAAGGAAACAAGAGAACTTGAAGTACTAGATGAGGAGCCAGGTGATGATGAAGAAGGTGGTGGCCAAAGAAAGTACAAGTTGCCTATGACAGCTATTATCCCTTTCCCCAAGAGAACTGATCCTTCCAGTGCCCAAGATTTCCCTACTGGAAGACACGTTTTGGCAGTATATCCAGGAACAACTGCACTATATAAGGCAACTGTGGTGAACGGTCATCGCAAGAGGAAGACAGATGAGTATTTGCTGGAATTTGATGACGACGAGGAAGATGGAGCCTTGCCTCAGAGGGTAGTGCCCTTCCATAAGGTGGTTGCCCTGCCAGATGGACATCGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051276 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1325

Protein Analysis

272

Amino Acids

30.63

Weight (kDa)

5.64

Isoelectric Point (pI)

60.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT5G40550 AT5G40550 AT5G40550 AT5G40550
fragaria_vesca	FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240
malus_domestica	MD09G1022400.v1.1 MD17G1021800.v1.1 MD17G1021900.v1.1
prunus_persica	Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1
pyrus_communis	pycom111g01880 pycom17g01900
rosa_chinensis	RchiOBHm_Chr2g0123161
rosa_laevigata	RLG00000018732
rosa_multiflora	Rmu_sc0005573.1_g000008 Rmu_sc0018145.1_g000002
rosa_roxburghii	Rroxscaffold_2G00120870
rosa_rugosa	Rorug02G0243400 Rorug02G0243400 Rorug02G0243500
rosa_samantha	Rh2AG303000 Rh2BG310900 Rh2CG289300 Rh2DG327000
rosa_wichuraiana	Rw0G004900 Rw2G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	784
AciI	CCGC	1 cut(s)	404
AclWI	GGATC	1 cut(s)	590
AcoI	YGGCCR	1 cut(s)	538
AcsI	RAATTY	2 cut(s)	220, 725
AcuI	CTGAAG	2 cut(s)	144, 185
AfaI	GTAC	2 cut(s)	501, 551
AfiI	CCNNNNNNNGG	1 cut(s)	784
AflIII	ACRYGT	1 cut(s)	631
AgsI	TTSAA	2 cut(s)	219, 497
AjnI	CCWGG	4 cut(s)	139, 265, 514, 649
AluBI	AGCT	6 cut(s)	46, 109, 163, 193, 373, 569
AluI	AGCT	6 cut(s)	46, 109, 163, 193, 373, 569
Alw21I	GWGCWC	3 cut(s)	48, 81, 195
AlwI	GGATC	1 cut(s)	590
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	1 cut(s)	538
ApeKI	GCWGC	1 cut(s)	271
ApoI	RAATTY	2 cut(s)	220, 725
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	4 cut(s)	73, 404, 530, 694
AvaI	CYCGRG	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	260
BaeGI	GKGCMC	2 cut(s)	610, 774
BalI	TGGCCA	1 cut(s)	540
BanII	GRGCYC	2 cut(s)	48, 195
BbsI	GAAGAC	2 cut(s)	634, 710
Bbv12I	GWGCWC	3 cut(s)	48, 81, 195
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	3 cut(s)	280, 740, 794
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BciT130I	CCWGG	4 cut(s)	141, 267, 516, 651
BfaI	CTAG	3 cut(s)	381, 408, 503
BisI	GCNGC	2 cut(s)	272, 405
BlsI	GCNGC	2 cut(s)	273, 406
BmcAI	AGTACT	1 cut(s)	501
Bme1390I	CCNGG	4 cut(s)	141, 267, 516, 651
Bme18I	GGWCC	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	2 cut(s)	513, 751
BmrFI	CCNGG	4 cut(s)	141, 267, 516, 651
BmsI	GCATC	3 cut(s)	87, 232, 421
BpiI	GAAGAC	2 cut(s)	634, 710
BpmI	CTGGAG	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	408
BsaBI	GATNNNNATC	1 cut(s)	804
BsaJI	CCNNGG	3 cut(s)	140, 266, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	784
Bse1I	ACTGG	4 cut(s)	33, 603, 628, 811
Bse3DI	GCAATG	1 cut(s)	15
Bse8I	GATNNNNATC	1 cut(s)	804
BseBI	CCWGG	4 cut(s)	141, 267, 516, 651
BseDI	CCNNGG	3 cut(s)	140, 266, 275
BseGI	GGATG	2 cut(s)	291, 348
BseJI	GATNNNNATC	1 cut(s)	804
BseLI	CCNNNNNNNGG	1 cut(s)	784
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	773
BseNI	ACTGG	4 cut(s)	33, 603, 628, 811
BseRI	GAGGAG	1 cut(s)	524
BseSI	GKGCMC	2 cut(s)	610, 774
BseXI	GCAGC	1 cut(s)	283
BsgI	GTGCAG	1 cut(s)	645
BshFI	GGCC	1 cut(s)	540
BsiHKAI	GWGCWC	3 cut(s)	48, 81, 195
BsiHKCI	CYCGRG	1 cut(s)	368
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	1 cut(s)	784
BsmFI	GGGAC	1 cut(s)	331
BsnI	GGCC	1 cut(s)	540
BsoBI	CYCGRG	1 cut(s)	368
Bsp1286I	GDGCHC	5 cut(s)	48, 81, 195, 610, 774
Bsp143I	GATC	2 cut(s)	49, 595
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	1 cut(s)	540
BspCNI	CTCAG	1 cut(s)	772
BspLI	GGNNCC	2 cut(s)	513, 751
BspPI	GGATC	1 cut(s)	590
BsrDI	GCAATG	1 cut(s)	15
BsrI	ACTGG	4 cut(s)	33, 603, 628, 811
BssECI	CCNNGG	3 cut(s)	140, 266, 275
BssMI	GATC	2 cut(s)	49, 595
Bst2UI	CCWGG	4 cut(s)	141, 267, 516, 651
Bst4CI	ACNGT	2 cut(s)	679, 689
Bst6I	CTCTTC	3 cut(s)	66, 305, 438
BstDEI	CTNAG	1 cut(s)	759
BstDSI	CCRYGG	1 cut(s)	275
BstF5I	GGATG	2 cut(s)	291, 348
BstKTI	GATC	2 cut(s)	52, 598
BstMBI	GATC	2 cut(s)	49, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNI	CCWGG	4 cut(s)	141, 267, 516, 651
BstSCI	CCNGG	4 cut(s)	139, 265, 514, 649
BstSLI	GKGCMC	2 cut(s)	610, 774
BstV1I	GCAGC	1 cut(s)	283
BstV2I	GAAGAC	2 cut(s)	634, 710
BsuRI	GGCC	1 cut(s)	540
BtgI	CCRYGG	1 cut(s)	275
BtgZI	GCGATG	2 cut(s)	677, 791
BtsCI	GGATG	2 cut(s)	291, 348
BtsIMutI	CAGTG	1 cut(s)	610
Cfr13I	GGNCC	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	500, 550
CviAII	CATG	2 cut(s)	182, 415
CviQI	GTAC	2 cut(s)	500, 550
DdeI	CTNAG	1 cut(s)	759
DpnI	GATC	2 cut(s)	51, 597
DpnII	GATC	2 cut(s)	49, 595
EaeI	YGGCCR	1 cut(s)	538
Eam1104I	CTCTTC	3 cut(s)	66, 305, 438
EarI	CTCTTC	3 cut(s)	66, 305, 438
Ecl136II	GAGCTC	2 cut(s)	46, 193
Eco24I	GRGCYC	2 cut(s)	48, 195
Eco47I	GGWCC	1 cut(s)	260
Eco53kI	GAGCTC	2 cut(s)	46, 193
Eco57I	CTGAAG	2 cut(s)	144, 185
Eco88I	CYCGRG	1 cut(s)	368
EcoICRI	GAGCTC	2 cut(s)	46, 193
EcoRII	CCWGG	4 cut(s)	139, 265, 514, 649
EcoT22I	ATGCAT	1 cut(s)	102
EcoT38I	GRGCYC	2 cut(s)	48, 195
FaeI	CATG	2 cut(s)	185, 418
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	2 cut(s)	181, 414
Fnu4HI	GCNGC	2 cut(s)	272, 405
FokI	GGATG	2 cut(s)	298, 355
FriOI	GRGCYC	2 cut(s)	48, 195
Fsp4HI	GCNGC	2 cut(s)	272, 405
FspBI	CTAG	3 cut(s)	381, 408, 503
GluI	GCNGC	2 cut(s)	272, 405
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	540
Hin1II	CATG	2 cut(s)	185, 418
HincII	GTYRAC	2 cut(s)	236, 365
HindII	GTYRAC	2 cut(s)	236, 365
HinfI	GANTC	2 cut(s)	232, 326
HphI	GGTGA	4 cut(s)	73, 404, 530, 694
Hpy166II	GTNNAC	4 cut(s)	236, 365, 395, 685
Hpy188I	TCNGA	3 cut(s)	199, 331, 762
Hpy188III	TCNNGA	3 cut(s)	122, 258, 425
Hpy8I	GTNNAC	4 cut(s)	236, 365, 395, 685
Hpy99I	CGWCG	1 cut(s)	740
HpyAV	CCTTC	7 cut(s)	160, 264, 276, 284, 524, 609, 784
HpyCH4III	ACNGT	2 cut(s)	679, 689
HpyCH4IV	ACGT	1 cut(s)	633
HpyCH4V	TGCA	4 cut(s)	20, 100, 469, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	1 cut(s)	759
HpySE526I	ACGT	1 cut(s)	633
Hsp92II	CATG	2 cut(s)	185, 418
Kzo9I	GATC	2 cut(s)	49, 595
LmnI	GCTCC	3 cut(s)	114, 511, 749
Lsp1109I	GCAGC	1 cut(s)	283
LweI	GCATC	3 cut(s)	87, 232, 421
MaeI	CTAG	3 cut(s)	381, 408, 503
MaeII	ACGT	1 cut(s)	633
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	2 cut(s)	51, 597
MboI	GATC	2 cut(s)	49, 595
MboII	GAAGA	9 cut(s)	83, 322, 331, 440, 455, 539, 639, 715, 755
MhlI	GDGCHC	5 cut(s)	48, 81, 195, 610, 774
MlsI	TGGCCA	1 cut(s)	540
MluCI	AATT	3 cut(s)	53, 220, 725
MluNI	TGGCCA	1 cut(s)	540
MlyI	GAGTC	1 cut(s)	241
MnlI	CCTC	9 cut(s)	67, 273, 333, 361, 502, 693, 733, 756, 768
Mox20I	TGGCCA	1 cut(s)	540
Mph1103I	ATGCAT	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	540
MseI	TTAA	1 cut(s)	56
Msp20I	TGGCCA	1 cut(s)	540
MspR9I	CCNGG	4 cut(s)	141, 267, 516, 651
MvaI	CCWGG	4 cut(s)	141, 267, 516, 651
MwoI	GCNNNNNNNGC	1 cut(s)	106
NdeII	GATC	2 cut(s)	49, 595
NlaIII	CATG	2 cut(s)	185, 418
NlaIV	GGNNCC	2 cut(s)	513, 751
NmuCI	GTSAC	1 cut(s)	418
NsiI	ATGCAT	1 cut(s)	102
PaeR7I	CTCGAG	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	784
PfoI	TCCNGGA	1 cut(s)	649
PkrI	GCNGC	2 cut(s)	273, 406
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
Psp124BI	GAGCTC	2 cut(s)	48, 195
Psp6I	CCWGG	4 cut(s)	139, 265, 514, 649
PspGI	CCWGG	4 cut(s)	139, 265, 514, 649
PspN4I	GGNNCC	2 cut(s)	513, 751
PspPI	GGNCC	1 cut(s)	260
PspXI	VCTCGAGB	1 cut(s)	368
PsrI	GAACNNNNNNTAC	2 cut(s)	483, 515
RsaI	GTAC	2 cut(s)	501, 551
RsaNI	GTAC	2 cut(s)	500, 550
SacI	GAGCTC	2 cut(s)	48, 195
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	2 cut(s)	272, 405
Sau3AI	GATC	2 cut(s)	49, 595
Sau96I	GGNCC	1 cut(s)	260
ScaI	AGTACT	1 cut(s)	501
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	4 cut(s)	141, 267, 516, 651
SduI	GDGCHC	5 cut(s)	48, 81, 195, 610, 774
SfaNI	GCATC	3 cut(s)	87, 232, 421
Sfr274I	CTCGAG	1 cut(s)	368
SinI	GGWCC	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	368
SmlI	CTYRAG	2 cut(s)	368, 423
SmoI	CTYRAG	2 cut(s)	368, 423
Sse9I	AATT	3 cut(s)	53, 220, 725
SsiI	CCGC	1 cut(s)	404
SspMI	CTAG	3 cut(s)	381, 408, 503
SstI	GAGCTC	2 cut(s)	48, 195
StyD4I	CCNGG	4 cut(s)	139, 265, 514, 649
TaaI	ACNGT	2 cut(s)	679, 689
TaiI	ACGT	1 cut(s)	636
TaqI	TCGA	4 cut(s)	48, 338, 369, 474
TasI	AATT	3 cut(s)	53, 220, 725
TatI	WGTACW	2 cut(s)	499, 549
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	1 cut(s)	610
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	4 cut(s)	170, 224, 332, 540
TspGWI	ACGGA	2 cut(s)	292, 343
TspRI	CASTG	1 cut(s)	610
Van91I	CCANNNNNTGG	1 cut(s)	784
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	2 cut(s)	220, 725
XcmI	CCANNNNNNNNNTGG	1 cut(s)	124
XhoI	CTCGAG	1 cut(s)	368
XspI	CTAG	3 cut(s)	381, 408, 503
ZrmI	AGTACT	1 cut(s)	501
Zsp2I	ATGCAT	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.