Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001979

Physical Location & Seq

Genomic Coordinates Forward (+)

25163905 .. 25165518

Gene Structure 1614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0243500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAGGAGCGGGGCCCACCTGCAACCGGCGCCGATGACATCAACGAAGACCCAGCTCCAACGTCAGAGACGCAGCTAGTACCCTATGGTCCCATCCCCTCACCCAACGAAACATACGTAATCCATTTCCCTAAAGACCAAATCTACCGCGTGCCGCCCCCTGAAAATGCCATACTCGTCGATAAGCACCGGCCGGTGACCAAGAAGAAATCACGCAAGTCTTGTTGCTGGGCGCTCCTTGTCGTTTTGCTTGTCCTGTTCCTCATATTCGGCATAGCCTTGCTGACATGGTACCTCGTTTTGAGCCATAAAGACCCTACATTCTCTATCAGTCAGGTCCAAGTGAAGCAATCGAATTCTTCAGACAGTAGCAAGGATTCAGATCTAGGATATGACATCACCTTGAAAGCTGTTAATCCTAATGATAAGATGAGCATACGCTTCGAAAATGGTGGTGGAACTTCCCTTTTATATAGGCAAAAGGACATTGCTAAGGGCAAATTTCCATCTGATCAACTAGATGATGATGAGTCGGACACCGTAAAACTTGTTCTATACGGAACAAGCGCAGAGTTGCCTAGCGAGGTCCAGGAAAGCATCGAAAAAACTAGTTCGAAGAAGACGACGCCGTTGTCCCTAAGTCTGAAAATAAGTGACCTTCCTGTACATATCAAATATGGGTTTTTTAAGAGTTGGGATGAGAAAGCGGTAGTCGAATGCAAATTCAAGGTGGACACATTGGGGTCGGGTACAAAGGTCCTTGAGCAAAATTGTGACACTACATTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051276 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1325

Protein Analysis

263

Amino Acids

29.21

Weight (kDa)

5.67

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT5G40550 AT5G40550 AT5G40550 AT5G40550
fragaria_vesca	FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240
malus_domestica	MD09G1022400.v1.1 MD17G1021800.v1.1 MD17G1021900.v1.1
prunus_persica	Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1
pyrus_communis	pycom111g01880 pycom17g01900
rosa_chinensis	RchiOBHm_Chr2g0123161
rosa_laevigata	RLG00000018732
rosa_multiflora	Rmu_sc0005573.1_g000008 Rmu_sc0018145.1_g000002
rosa_roxburghii	Rroxscaffold_2G00120870
rosa_rugosa	Rorug02G0243400 Rorug02G0243400 Rorug02G0243500
rosa_samantha	Rh2AG303000 Rh2BG310900 Rh2CG289300 Rh2DG327000
rosa_wichuraiana	Rw0G004900 Rw2G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	28
AasI	GACNNNNNNGTC	1 cut(s)	631
Acc36I	ACCTGC	1 cut(s)	28
Acc65I	GGTACC	1 cut(s)	291
AccB1I	GGYRCC	2 cut(s)	29, 291
AccBSI	CCGCTC	1 cut(s)	10
AccII	CGCG	1 cut(s)	150
AciI	CCGC	4 cut(s)	10, 148, 155, 707
AcoI	YGGCCR	1 cut(s)	191
AcsI	RAATTY	3 cut(s)	355, 500, 722
AcuI	CTGAAG	1 cut(s)	345
AcyI	GRCGYC	2 cut(s)	30, 626
AfaI	GTAC	4 cut(s)	81, 293, 666, 751
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	3 cut(s)	406, 727, 787
AhlI	ACTAGT	1 cut(s)	608
AjnI	CCWGG	1 cut(s)	588
AluBI	AGCT	3 cut(s)	56, 76, 410
AluI	AGCT	3 cut(s)	56, 76, 410
Alw26I	GTCTC	1 cut(s)	62
AoxI	GGCC	2 cut(s)	13, 191
ApaI	GGGCCC	1 cut(s)	17
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	3 cut(s)	355, 500, 722
Asp718I	GGTACC	1 cut(s)	291
AspLEI	GCGC	3 cut(s)	32, 235, 569
AspS9I	GGNCC	6 cut(s)	13, 14, 89, 337, 586, 757
AsuHPI	GGTGA	3 cut(s)	93, 208, 391
AsuII	TTCGAA	2 cut(s)	444, 614
AvaII	GGWCC	4 cut(s)	89, 337, 586, 757
BaeGI	GKGCMC	1 cut(s)	17
BaeI	ACNNNNGTAYC	2 cut(s)	741, 774
BanI	GGYRCC	2 cut(s)	29, 291
BanII	GRGCYC	1 cut(s)	17
BbsI	GAAGAC	2 cut(s)	54, 626
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	2 cut(s)	101, 514
BceAI	ACGGC	1 cut(s)	613
BcgI	CGANNNNNNTGC	2 cut(s)	424, 458
BciT130I	CCWGG	1 cut(s)	590
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	1 cut(s)	62
BcuI	ACTAGT	1 cut(s)	608
BfaI	CTAG	5 cut(s)	77, 386, 518, 579, 609
BfoI	RGCGCY	2 cut(s)	33, 236
BfuAI	ACCTGC	1 cut(s)	28
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	2 cut(s)	74, 155
BlsI	GCNGC	2 cut(s)	75, 156
Bme1390I	CCNGG	1 cut(s)	590
Bme18I	GGWCC	4 cut(s)	89, 337, 586, 757
BmgT120I	GGNCC	6 cut(s)	13, 14, 89, 337, 586, 757
BmiI	GGNNCC	5 cut(s)	14, 15, 31, 91, 293
BmrFI	CCNGG	1 cut(s)	590
BmsI	GCATC	1 cut(s)	606
BpiI	GAAGAC	2 cut(s)	54, 626
Bpu10I	CCTNAGC	1 cut(s)	492
Bpu14I	TTCGAA	2 cut(s)	444, 614
BpuEI	CTTGAG	1 cut(s)	782
BsaAI	YACGTR	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	381
BsaHI	GRCGYC	2 cut(s)	30, 626
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse118I	RCCGGY	3 cut(s)	26, 189, 193
Bse3DI	GCAATG	1 cut(s)	486
Bse8I	GATNNNNATC	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	590
BseGI	GGATG	2 cut(s)	93, 703
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMI	GCAATG	1 cut(s)	486
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	17
BseX3I	CGGCCG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	85
BseYI	CCCAGC	2 cut(s)	52, 228
Bsh1236I	CGCG	1 cut(s)	150
Bsh1285I	CGRYCG	1 cut(s)	194
BshFI	GGCC	2 cut(s)	15, 193
BshNI	GGYRCC	2 cut(s)	29, 291
BsiEI	CGRYCG	1 cut(s)	194
BsiSI	CCGG	3 cut(s)	27, 190, 194
BslFI	GGGAC	2 cut(s)	75, 619
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	62
BsmBI	CGTCTC	1 cut(s)	62
BsmFI	GGGAC	2 cut(s)	75, 619
BsmI	GAATGC	1 cut(s)	722
BsnI	GGCC	2 cut(s)	15, 193
Bsp119I	TTCGAA	2 cut(s)	444, 614
Bsp120I	GGGCCC	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp1407I	TGTACA	1 cut(s)	664
Bsp143I	GATC	2 cut(s)	382, 511
BspACI	CCGC	4 cut(s)	10, 148, 155, 707
BspANI	GGCC	2 cut(s)	15, 193
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	5 cut(s)	14, 15, 31, 91, 293
BspMI	ACCTGC	1 cut(s)	28
BspT104I	TTCGAA	2 cut(s)	444, 614
BspT107I	GGYRCC	2 cut(s)	29, 291
BsrBI	CCGCTC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	486
BsrFI	RCCGGY	3 cut(s)	26, 189, 193
BsrGI	TGTACA	1 cut(s)	664
BssAI	RCCGGY	3 cut(s)	26, 189, 193
BssMI	GATC	2 cut(s)	382, 511
BssNI	GRCGYC	2 cut(s)	30, 626
Bst2UI	CCWGG	1 cut(s)	590
Bst4CI	ACNGT	2 cut(s)	368, 541
BstACI	GRCGYC	2 cut(s)	30, 626
BstAUI	TGTACA	1 cut(s)	664
BstBAI	YACGTR	1 cut(s)	118
BstBI	TTCGAA	2 cut(s)	444, 614
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	2 cut(s)	492, 638
BstEII	GGTNACC	1 cut(s)	196
BstF5I	GGATG	2 cut(s)	93, 703
BstFNI	CGCG	1 cut(s)	150
BstH2I	RGCGCY	2 cut(s)	33, 236
BstHHI	GCGC	3 cut(s)	32, 235, 569
BstKTI	GATC	2 cut(s)	385, 514
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	2 cut(s)	382, 511
BstMCI	CGRYCG	1 cut(s)	194
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	1 cut(s)	590
BstPI	GGTNACC	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	588
BstSLI	GKGCMC	1 cut(s)	17
BstSNI	TACGTA	1 cut(s)	118
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	85
BstV2I	GAAGAC	2 cut(s)	54, 626
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BstZI	CGGCCG	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	15, 193
BtsCI	GGATG	2 cut(s)	93, 703
BveI	ACCTGC	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	152
CfoI	GCGC	3 cut(s)	32, 235, 569
Cfr10I	RCCGGY	3 cut(s)	26, 189, 193
Cfr13I	GGNCC	6 cut(s)	13, 14, 89, 337, 586, 757
CseI	GACGC	2 cut(s)	79, 634
Csp6I	GTAC	4 cut(s)	80, 292, 665, 750
CviAII	CATG	1 cut(s)	288
CviJI	RGCY	7 cut(s)	15, 56, 76, 193, 278, 306, 410
CviKI_1	RGCY	7 cut(s)	15, 56, 76, 193, 278, 306, 410
CviQI	GTAC	4 cut(s)	80, 292, 665, 750
DdeI	CTNAG	2 cut(s)	492, 638
DinI	GGCGCC	1 cut(s)	31
DpnI	GATC	2 cut(s)	384, 513
DpnII	GATC	2 cut(s)	382, 511
DrdI	GACNNNNNNGTC	1 cut(s)	631
DseDI	GACNNNNNNGTC	1 cut(s)	631
EaeI	YGGCCR	1 cut(s)	191
EagI	CGGCCG	1 cut(s)	191
EclXI	CGGCCG	1 cut(s)	191
Eco105I	TACGTA	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	17
Eco47I	GGWCC	4 cut(s)	89, 337, 586, 757
Eco52I	CGGCCG	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	345
Eco91I	GGTNACC	1 cut(s)	196
EcoO109I	RGGNCCY	2 cut(s)	13, 757
EcoO65I	GGTNACC	1 cut(s)	196
EcoRI	GAATTC	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	588
EcoT38I	GRGCYC	1 cut(s)	17
EgeI	GGCGCC	1 cut(s)	31
EheI	GGCGCC	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	62
FaeI	CATG	1 cut(s)	291
FaqI	GGGAC	2 cut(s)	75, 619
FatI	CATG	1 cut(s)	287
FauI	CCCGC	1 cut(s)	3
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	2 cut(s)	74, 155
FokI	GGATG	2 cut(s)	80, 710
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	74, 155
FspBI	CTAG	5 cut(s)	77, 386, 518, 579, 609
GlaI	GCGC	3 cut(s)	31, 234, 568
GluI	GCNGC	2 cut(s)	74, 155
GsaI	CCCAGC	2 cut(s)	56, 232
HaeII	RGCGCY	2 cut(s)	33, 236
HaeIII	GGCC	2 cut(s)	15, 193
HapII	CCGG	3 cut(s)	27, 190, 194
HgaI	GACGC	2 cut(s)	79, 634
HhaI	GCGC	3 cut(s)	32, 235, 569
Hin1I	GRCGYC	2 cut(s)	30, 626
Hin1II	CATG	1 cut(s)	291
Hin6I	GCGC	3 cut(s)	30, 233, 567
HinP1I	GCGC	3 cut(s)	30, 233, 567
HinfI	GANTC	2 cut(s)	377, 530
HpaII	CCGG	3 cut(s)	27, 190, 194
HphI	GGTGA	3 cut(s)	93, 208, 391
Hpy166II	GTNNAC	1 cut(s)	733
Hpy188I	TCNGA	6 cut(s)	67, 364, 382, 511, 535, 645
Hpy8I	GTNNAC	1 cut(s)	733
Hpy99I	CGWCG	2 cut(s)	182, 628
HpyAV	CCTTC	1 cut(s)	668
HpyCH4III	ACNGT	2 cut(s)	368, 541
HpyCH4IV	ACGT	2 cut(s)	62, 117
HpyCH4V	TGCA	2 cut(s)	23, 720
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	2 cut(s)	492, 638
HpySE526I	ACGT	2 cut(s)	62, 117
Hsp92I	GRCGYC	2 cut(s)	30, 626
Hsp92II	CATG	1 cut(s)	291
HspAI	GCGC	3 cut(s)	30, 233, 567
KasI	GGCGCC	1 cut(s)	29
KpnI	GGTACC	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	2 cut(s)	382, 511
LmnI	GCTCC	3 cut(s)	7, 61, 240
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	606
MaeI	CTAG	5 cut(s)	77, 386, 518, 579, 609
MaeII	ACGT	2 cut(s)	62, 117
MaeIII	GTNAC	3 cut(s)	196, 653, 773
MalI	GATC	2 cut(s)	384, 513
MbiI	CCGCTC	1 cut(s)	10
MboI	GATC	2 cut(s)	382, 511
MboII	GAAGA	5 cut(s)	59, 217, 351, 628, 631
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	4 cut(s)	355, 500, 722, 769
Mly113I	GGCGCC	1 cut(s)	30
MlyI	GAGTC	1 cut(s)	539
MmeI	TCCRAC	2 cut(s)	83, 513
MnlI	CCTC	4 cut(s)	109, 272, 305, 577
MseI	TTAA	2 cut(s)	414, 687
MslI	CAYNNNNRTG	1 cut(s)	787
MspI	CCGG	3 cut(s)	27, 190, 194
MspR9I	CCNGG	1 cut(s)	590
Mva1269I	GAATGC	1 cut(s)	722
MvaI	CCWGG	1 cut(s)	590
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	29
NarI	GGCGCC	1 cut(s)	30
NdeII	GATC	2 cut(s)	382, 511
NlaIII	CATG	1 cut(s)	291
NlaIV	GGNNCC	5 cut(s)	14, 15, 31, 91, 293
NmuCI	GTSAC	3 cut(s)	196, 653, 773
NspV	TTCGAA	2 cut(s)	444, 614
PaqCI	CACCTGC	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 620
PctI	GAATGC	1 cut(s)	722
PfeI	GAWTC	1 cut(s)	377
PfoI	TCCNGGA	1 cut(s)	588
PkrI	GCNGC	2 cut(s)	75, 156
PleI	GAGTC	1 cut(s)	538
PluTI	GGCGCC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	538
Ppu21I	YACGTR	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	757
Psp5II	RGGWCCY	1 cut(s)	757
Psp6I	CCWGG	1 cut(s)	588
PspEI	GGTNACC	1 cut(s)	196
PspFI	CCCAGC	2 cut(s)	52, 228
PspGI	CCWGG	1 cut(s)	588
PspN4I	GGNNCC	5 cut(s)	14, 15, 31, 91, 293
PspOMI	GGGCCC	1 cut(s)	13
PspPI	GGNCC	6 cut(s)	13, 14, 89, 337, 586, 757
PspPPI	RGGWCCY	1 cut(s)	757
PsrI	GAACNNNNNNTAC	2 cut(s)	534, 566
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	4 cut(s)	81, 293, 666, 751
RsaNI	GTAC	4 cut(s)	80, 292, 665, 750
RseI	CAYNNNNRTG	1 cut(s)	787
SaqAI	TTAA	2 cut(s)	414, 687
SatI	GCNGC	2 cut(s)	74, 155
Sau3AI	GATC	2 cut(s)	382, 511
Sau96I	GGNCC	6 cut(s)	13, 14, 89, 337, 586, 757
SchI	GAGTC	1 cut(s)	539
ScrFI	CCNGG	1 cut(s)	590
SduI	GDGCHC	1 cut(s)	17
SfaNI	GCATC	1 cut(s)	606
SfoI	GGCGCC	1 cut(s)	31
SfuI	TTCGAA	2 cut(s)	444, 614
SinI	GGWCC	4 cut(s)	89, 337, 586, 757
SmiMI	CAYNNNNRTG	1 cut(s)	787
SmlI	CTYRAG	1 cut(s)	761
SmoI	CTYRAG	1 cut(s)	761
SnaBI	TACGTA	1 cut(s)	118
SpeI	ACTAGT	1 cut(s)	608
Sse9I	AATT	4 cut(s)	355, 500, 722, 769
SsiI	CCGC	4 cut(s)	10, 148, 155, 707
SspDI	GGCGCC	1 cut(s)	29
SspMI	CTAG	5 cut(s)	77, 386, 518, 579, 609
StyD4I	CCNGG	1 cut(s)	588
TaaI	ACNGT	2 cut(s)	368, 541
TaiI	ACGT	2 cut(s)	65, 120
TaqI	TCGA	6 cut(s)	180, 353, 444, 600, 614, 714
TasI	AATT	4 cut(s)	355, 500, 722, 769
TatI	WGTACW	1 cut(s)	664
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	2 cut(s)	414, 687
Tru9I	TTAA	2 cut(s)	414, 687
TseFI	GTSAC	3 cut(s)	196, 653, 773
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	3 cut(s)	196, 653, 773
TspGWI	ACGGA	1 cut(s)	573
VpaK11BI	GGWCC	4 cut(s)	89, 337, 586, 757
XapI	RAATTY	3 cut(s)	355, 500, 722
XspI	CTAG	5 cut(s)	77, 386, 518, 579, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.