AT3G27580

Serine/Threonine protein kinases, catalytic domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
10217417 .. 10220061
2645 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27580.1

Sequence Viewer

Length: 1737 bp
ATGGATTCTTCTTCATCAGTCGTTTACGTTGGTTCATCATCCAAATCCAGAAACTTTCAATCTAAATCCAAAGGTTCGATTACATCTTTCTCAATCGATTCAAGAGGCACCAAGAAATCAATGAAGACGTTATTAATCCCAGAACCAGAACCAACTTCCCCTGAAGTTATAGAAAGTTCTGTGTCCTCTGTTTCAGCTGAATCCGAGACACCAATTTCGATTATACGTAAGAAGAAACAATCAGAGCCAAGGTTTTACTCTAGCCCAACCAACACGTTTTACACAGAAGCAAAACAAAGCTTTACCAACACAGAATTCAGTGAATGTGCAAGCATAAGCACTATTGGTATAGGTGGTATTGATTTGGAGAAGAATGGTGTAATGATATACAGAGGAAGTATAGGGAGTGATGTTAGTGATGAGAGTAGCTCAAGTGGTCTGAGTAATGCAGCTTACAAGCCACATAGAGATAATAACGATAAGCGTTGGGTTGCGATTCAGGAGGTTCGTTCTCGGGTTGGTTCGTCGCTTGAGGCTAAAGATTTCAAGCTGATTAAGAAGTTAGGAGGAGGTGATATTGGTAATGTTTACTTAGCTGAGTTGATTGGAACTGGAGTGAGTTTTGCTGTGAAAGTTATGGAGAAAGCTGCTATTGCAGCGAGGAAGAAGCTTGTTAGAGCTCAGACTGAGAAAGAGATACTTCAATCGTTAGATCATCCTTTCTTGCCTACGCTTTACTCACATTTCGAAACAGAGATGAATTCTTGTTTGGTTATGGAGTTTTGTCCTGGTGGTGATTTACATTCTCTTAGACAAAAACAGCGTGGAAAGTACTTCCCTGAGCAAGCTGCTAGATTTTATGTTGCTGAAGTTCTTCTTGCTATGGAGTATCTACATATGCTTGGGATCATATACAGAGACCTTAAGCCTGAGAATGTTTTAGTTCGTGAAGATGGACATATAATGCTATCTGATTTCGACCTCTCTTTGAGATGTGCAGTCTCTCCAACGTTGGTTCGGTTCGCAGCAATCACGCTTGAGTCCAAAAGCTCAAGCTACTGTATCCAACCAACATGTGTAGACCAATCGAGCTGCATTGTTCAGCCTGACTGCATCCAGCCAGTGTGTTTCACTCCTCGGTTCTTGTCTAAAGGAAAGCACAGGAAGAAGTCGAACGATATGAGCCGCCAAATCAGACCGCTTCCTGAGCTGATAGCTGAACCGACTAGCGCAAGGTCAATGTCGTTTGTTGGTACACACGAGTACCTAGCACCAGAGATTATCAAAGGAGAAGGTCATGGAAGCGCGGTTGACTGGTGGACATTCGGGATATTCCTCTATGAGCTTCTATTTGGGATAACACCGTTTAGAGGAGGCGATAACAGAGCGACACTCTTTAACGTAGTTGGACAGCCATTGCGGTTTCCCGAGCATCCAAATGTGAGCTTTGCAGCTAGAGATTTGATCAGAGGATTGCTAGTGAAAGAGCCTCAGCATCGGTTGGCTTATAGAAGAGGAGCTACTGAGATTAAGCAGCATCCGTTTTTCCAAAGTGTGAATTGGGCTTTGATCAGATGCACCAGTCCACCACAGATTCCTCAACCGGTTAAACCAATGGATCAAGCTCACAGTGTTCGTCATGGTTTTAGTCAAGGACATGGACATGTTGGTTATGATAAGCCTCCTACTGTGGATGTGAAGCCTTCTGGTAATTATTTGGAAATTGATTTCTTCTGA

Protein Analysis

578

Amino Acids

64.29

Weight (kDa)

8.72

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 182 - 333 2.8e-37 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 183 - 330 1.2e-21 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 413 - 516 1.6e-20 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 107
AccI GTMKAC 1 cut(s) 1080
AccII CGCG 1 cut(s) 1307
AciI CCGC 4 cut(s) 1186, 1199, 1307, 1420
AclI AACGTT 1 cut(s) 1010
AclWI GGATC 2 cut(s) 914, 1626
AcsI RAATTY 2 cut(s) 314, 760
AcuI CTGAAG 2 cut(s) 183, 888
AfaI GTAC 3 cut(s) 833, 1255, 1265
AfiI CCNNNNNNNGG 1 cut(s) 1370
AflII CTTAAG 1 cut(s) 923
AflIII ACRYGT 3 cut(s) 273, 1073, 1663
AgeI ACCGGT 1 cut(s) 1603
AgsI TTSAA 4 cut(s) 59, 102, 547, 704
AjnI CCWGG 1 cut(s) 787
AjuI GAANNNNNNNTTGG 4 cut(s) 299, 331, 752, 784
Alw21I GWGCWC 1 cut(s) 682
Alw26I GTCTC 3 cut(s) 200, 912, 1006
AlwI GGATC 2 cut(s) 914, 1626
Ama87I CYCGRG 2 cut(s) 513, 1427
ApeKI GCWGC 8 cut(s) 449, 647, 656, 848, 1025, 1092, 1451, 1534
ApoI RAATTY 2 cut(s) 314, 760
ArsI GACNNNNNNTTYG 2 cut(s) 199, 231
AseI ATTAAT 1 cut(s) 134
AsiGI ACCGGT 1 cut(s) 1603
Asp700I GAANNNNTTC 1 cut(s) 873
AspLEI GCGC 2 cut(s) 1232, 1307
AsuHPI GGTGA 2 cut(s) 584, 806
AsuII TTCGAA 1 cut(s) 747
AvaI CYCGRG 2 cut(s) 513, 1427
BaeI ACNNNNGTAYC 2 cut(s) 1247, 1280
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 682
BarI GAAGNNNNNNTAC 2 cut(s) 1504, 1536
BauI CACGAG 1 cut(s) 1259
BbsI GAAGAC 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 682
BbvCI CCTCAGC 1 cut(s) 1491
BbvI GCAGC 8 cut(s) 461, 634, 668, 835, 1037, 1079, 1463, 1546
BccI CCATC 1 cut(s) 947
BciT130I CCWGG 1 cut(s) 789
BciVI GTATCC 1 cut(s) 1073
BclI TGATCA 2 cut(s) 1464, 1569
BcoDI GTCTC 3 cut(s) 200, 912, 1006
BfaI CTAG 6 cut(s) 261, 852, 1227, 1268, 1455, 1478
BfrI CTTAAG 1 cut(s) 923
BfuI GTATCC 1 cut(s) 1073
BisI GCNGC 9 cut(s) 450, 648, 657, 849, 1026, 1093, 1186, 1452, 1535
BlsI GCNGC 9 cut(s) 451, 649, 658, 850, 1027, 1094, 1187, 1453, 1536
BmcAI AGTACT 1 cut(s) 833
Bme1390I CCNGG 1 cut(s) 789
BmeT110I CYCGRG 2 cut(s) 513, 1427
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 789
BmsI GCATC 5 cut(s) 1122, 1441, 1504, 1546, 1565
BpiI GAAGAC 1 cut(s) 131
BplI GAGNNNNNCTC 4 cut(s) 413, 445, 1377, 1409
BpmI CTGGAG 1 cut(s) 633
Bpu10I CCTNAGC 3 cut(s) 840, 1206, 1491
Bpu14I TTCGAA 1 cut(s) 747
BpuEI CTTGAG 4 cut(s) 415, 551, 1036, 1058
Bsa29I ATCGAT 1 cut(s) 96
BsaAI YACGTR 1 cut(s) 227
BsaI GGTCTC 1 cut(s) 912
BsaJI CCNNGG 2 cut(s) 248, 1136
BsaWI WCCGGW 1 cut(s) 1603
Bsc4I CCNNNNNNNGG 1 cut(s) 1370
Bse118I RCCGGY 1 cut(s) 1603
Bse1I ACTGG 4 cut(s) 616, 1121, 1319, 1581
Bse3DI GCAATG 1 cut(s) 1415
BseBI CCWGG 1 cut(s) 789
BseCI ATCGAT 1 cut(s) 96
BseDI CCNNGG 2 cut(s) 248, 1136
BseGI GGATG 6 cut(s) 38, 715, 1113, 1432, 1537, 1699
BseLI CCNNNNNNNGG 1 cut(s) 1370
BseMI GCAATG 1 cut(s) 1415
BseMII CTCAG 9 cut(s) 431, 588, 678, 695, 831, 921, 1197, 1505, 1515
BseNI ACTGG 4 cut(s) 616, 1121, 1319, 1581
BseRI GAGGAG 4 cut(s) 582, 1125, 1386, 1530
BseXI GCAGC 8 cut(s) 461, 634, 668, 835, 1037, 1079, 1463, 1546
BsgI GTGCAG 1 cut(s) 1017
Bsh1236I CGCG 1 cut(s) 1307
BshNI GGYRCC 1 cut(s) 107
BshTI ACCGGT 1 cut(s) 1603
BshVI ATCGAT 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 682
BsiHKCI CYCGRG 2 cut(s) 513, 1427
BsiSI CCGG 1 cut(s) 1604
BslI CCNNNNNNNGG 1 cut(s) 1370
BsmAI GTCTC 3 cut(s) 200, 912, 1006
Bso31I GGTCTC 1 cut(s) 912
BsoBI CYCGRG 2 cut(s) 513, 1427
Bsp119I TTCGAA 1 cut(s) 747
Bsp1286I GDGCHC 1 cut(s) 682
Bsp143I GATC 5 cut(s) 712, 906, 1464, 1569, 1618
BspACI CCGC 4 cut(s) 1186, 1199, 1307, 1420
BspCNI CTCAG 9 cut(s) 432, 589, 679, 694, 832, 922, 1198, 1504, 1516
BspDI ATCGAT 1 cut(s) 96
BspFNI CGCG 1 cut(s) 1307
BspLI GGNNCC 1 cut(s) 109
BspPI GGATC 2 cut(s) 914, 1626
BspT104I TTCGAA 1 cut(s) 747
BspT107I GGYRCC 1 cut(s) 107
BspTI CTTAAG 1 cut(s) 923
BspTNI GGTCTC 1 cut(s) 912
BsrDI GCAATG 1 cut(s) 1415
BsrFI RCCGGY 1 cut(s) 1603
BsrI ACTGG 4 cut(s) 616, 1121, 1319, 1581
BssAI RCCGGY 1 cut(s) 1603
BssECI CCNNGG 2 cut(s) 248, 1136
BssMI GATC 5 cut(s) 712, 906, 1464, 1569, 1618
BssSI CACGAG 1 cut(s) 1259
BssT1I CCWWGG 1 cut(s) 248
Bst2BI CACGAG 1 cut(s) 1259
Bst2UI CCWGG 1 cut(s) 789
Bst4CI ACNGT 4 cut(s) 1061, 1365, 1631, 1690
Bst6I CTCTTC 1 cut(s) 1507
BstAFI CTTAAG 1 cut(s) 923
BstBAI YACGTR 1 cut(s) 227
BstBI TTCGAA 1 cut(s) 747
BstC8I GCNNGC 2 cut(s) 331, 846
BstF5I GGATG 6 cut(s) 38, 715, 1113, 1432, 1537, 1699
BstFNI CGCG 1 cut(s) 1307
BstHHI GCGC 2 cut(s) 1232, 1307
BstKTI GATC 5 cut(s) 715, 909, 1467, 1572, 1621
BstMAI GTCTC 3 cut(s) 200, 912, 1006
BstMBI GATC 5 cut(s) 712, 906, 1464, 1569, 1618
BstMWI GCNNNNNNNGC 3 cut(s) 653, 656, 1207
BstNI CCWGG 1 cut(s) 789
BstNSI RCATGY 2 cut(s) 1077, 1667
BstSCI CCNGG 1 cut(s) 787
BstSNI TACGTA 1 cut(s) 227
BstUI CGCG 1 cut(s) 1307
BstV1I GCAGC 8 cut(s) 461, 634, 668, 835, 1037, 1079, 1463, 1546
BstV2I GAAGAC 1 cut(s) 131
Bsu15I ATCGAT 1 cut(s) 96
BsuI GTATCC 1 cut(s) 1073
BsuTUI ATCGAT 1 cut(s) 96
BtsCI GGATG 6 cut(s) 38, 715, 1113, 1432, 1537, 1699
BtsIMutI CAGTG 3 cut(s) 325, 1128, 1636
Cac8I GCNNGC 2 cut(s) 331, 846
CfoI GCGC 2 cut(s) 1232, 1307
Cfr10I RCCGGY 1 cut(s) 1603
ClaI ATCGAT 1 cut(s) 96
Csp6I GTAC 3 cut(s) 832, 1254, 1264
CspAI ACCGGT 1 cut(s) 1603
CviAII CATG 5 cut(s) 1074, 1298, 1640, 1658, 1664
CviQI GTAC 3 cut(s) 832, 1254, 1264
DpnI GATC 5 cut(s) 714, 908, 1466, 1571, 1620
DpnII GATC 5 cut(s) 712, 906, 1464, 1569, 1618
Eam1104I CTCTTC 1 cut(s) 1507
EarI CTCTTC 1 cut(s) 1507
Ecl136II GAGCTC 1 cut(s) 680
Eco105I TACGTA 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 248
Eco24I GRGCYC 1 cut(s) 682
Eco31I GGTCTC 1 cut(s) 912
Eco53kI GAGCTC 1 cut(s) 680
Eco57I CTGAAG 2 cut(s) 183, 888
Eco88I CYCGRG 2 cut(s) 513, 1427
EcoICRI GAGCTC 1 cut(s) 680
EcoRI GAATTC 2 cut(s) 314, 760
EcoRII CCWGG 1 cut(s) 787
EcoT14I CCWWGG 1 cut(s) 248
EcoT38I GRGCYC 1 cut(s) 682
ErhI CCWWGG 1 cut(s) 248
FaeI CATG 5 cut(s) 1077, 1301, 1643, 1661, 1667
FalI AAGNNNNNCTT 4 cut(s) 684, 716, 861, 893
FatI CATG 5 cut(s) 1073, 1297, 1639, 1657, 1663
FauNDI CATATG 1 cut(s) 897
FbaI TGATCA 2 cut(s) 1464, 1569
FblI GTMKAC 1 cut(s) 1080
Fnu4HI GCNGC 9 cut(s) 450, 648, 657, 849, 1026, 1093, 1186, 1452, 1535
FokI GGATG 6 cut(s) 25, 702, 1100, 1419, 1524, 1706
FriOI GRGCYC 1 cut(s) 682
Fsp4HI GCNGC 9 cut(s) 450, 648, 657, 849, 1026, 1093, 1186, 1452, 1535
FspBI CTAG 6 cut(s) 261, 852, 1227, 1268, 1455, 1478
GlaI GCGC 2 cut(s) 1231, 1306
GluI GCNGC 9 cut(s) 450, 648, 657, 849, 1026, 1093, 1186, 1452, 1535
GsuI CTGGAG 1 cut(s) 633
HapII CCGG 1 cut(s) 1604
HhaI GCGC 2 cut(s) 1232, 1307
Hin1II CATG 5 cut(s) 1077, 1301, 1643, 1661, 1667
Hin6I GCGC 2 cut(s) 1230, 1305
HinP1I GCGC 2 cut(s) 1230, 1305
HincII GTYRAC 1 cut(s) 1312
HindII GTYRAC 1 cut(s) 1312
HindIII AAGCTT 2 cut(s) 298, 668
HinfI GANTC 6 cut(s) 5, 98, 200, 496, 1040, 1594
HpaII CCGG 1 cut(s) 1604
HphI GGTGA 2 cut(s) 584, 806
Hpy166II GTNNAC 7 cut(s) 25, 589, 1081, 1256, 1312, 1320, 1586
Hpy188I TCNGA 9 cut(s) 205, 244, 441, 684, 973, 1196, 1469, 1574, 1736
Hpy188III TCNNGA 7 cut(s) 48, 102, 500, 947, 1205, 1327, 1427
Hpy8I GTNNAC 7 cut(s) 25, 589, 1081, 1256, 1312, 1320, 1586
Hpy99I CGWCG 1 cut(s) 529
HpyAV CCTTC 2 cut(s) 1286, 1713
HpyCH4III ACNGT 4 cut(s) 1061, 1365, 1631, 1690
HpyCH4IV ACGT 6 cut(s) 27, 128, 226, 275, 1010, 1401
HpyCH4V TGCA 8 cut(s) 329, 449, 656, 998, 1095, 1113, 1451, 1578
HpyF10VI GCNNNNNNNGC 3 cut(s) 653, 656, 1207
HpySE526I ACGT 6 cut(s) 27, 128, 226, 275, 1010, 1401
Hsp92II CATG 5 cut(s) 1077, 1301, 1643, 1661, 1667
HspAI GCGC 2 cut(s) 1230, 1305
Ksp22I TGATCA 2 cut(s) 1464, 1569
Kzo9I GATC 5 cut(s) 712, 906, 1464, 1569, 1618
LmnI GCTCC 1 cut(s) 1517
Lsp1109I GCAGC 8 cut(s) 461, 634, 668, 835, 1037, 1079, 1463, 1546
LweI GCATC 5 cut(s) 1122, 1441, 1504, 1546, 1565
MaeI CTAG 6 cut(s) 261, 852, 1227, 1268, 1455, 1478
MaeII ACGT 6 cut(s) 27, 128, 226, 275, 1010, 1401
MalI GATC 5 cut(s) 714, 908, 1466, 1571, 1620
MboI GATC 5 cut(s) 712, 906, 1464, 1569, 1618
MhlI GDGCHC 1 cut(s) 682
MluCI AATT 6 cut(s) 213, 314, 760, 1558, 1711, 1722
MlyI GAGTC 1 cut(s) 1049
MmeI TCCRAC 3 cut(s) 1031, 1090, 1387
MroXI GAANNNNTTC 1 cut(s) 873
MseI TTAA 6 cut(s) 134, 555, 924, 1398, 1530, 1608
MslI CAYNNNNRTG 2 cut(s) 1437, 1662
MspA1I CMGCKG 1 cut(s) 197
MspCI CTTAAG 1 cut(s) 923
MspI CCGG 1 cut(s) 1604
MspR9I CCNGG 1 cut(s) 789
MvaI CCWGG 1 cut(s) 789
MvnI CGCG 1 cut(s) 1307
MwoI GCNNNNNNNGC 3 cut(s) 653, 656, 1207
NdeI CATATG 1 cut(s) 897
NdeII GATC 5 cut(s) 712, 906, 1464, 1569, 1618
NlaIII CATG 5 cut(s) 1077, 1301, 1643, 1661, 1667
NlaIV GGNNCC 1 cut(s) 109
NspI RCATGY 2 cut(s) 1077, 1667
NspV TTCGAA 1 cut(s) 747
PciI ACATGT 2 cut(s) 1073, 1663
PdmI GAANNNNTTC 1 cut(s) 873
PfeI GAWTC 5 cut(s) 5, 98, 200, 496, 1594
PinAI ACCGGT 1 cut(s) 1603
PkrI GCNGC 9 cut(s) 451, 649, 658, 850, 1027, 1094, 1187, 1453, 1536
PleI GAGTC 1 cut(s) 1048
PpsI GAGTC 1 cut(s) 1048
Ppu21I YACGTR 1 cut(s) 227
PscI ACATGT 2 cut(s) 1073, 1663
PshBI ATTAAT 1 cut(s) 134
Psp124BI GAGCTC 1 cut(s) 682
Psp1406I AACGTT 1 cut(s) 1010
Psp6I CCWGG 1 cut(s) 787
PspGI CCWGG 1 cut(s) 787
PspN4I GGNNCC 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 3 cut(s) 833, 1255, 1265
RsaNI GTAC 3 cut(s) 832, 1254, 1264
RseI CAYNNNNRTG 2 cut(s) 1437, 1662
SacI GAGCTC 1 cut(s) 682
SaqAI TTAA 6 cut(s) 134, 555, 924, 1398, 1530, 1608
SatI GCNGC 9 cut(s) 450, 648, 657, 849, 1026, 1093, 1186, 1452, 1535
Sau3AI GATC 5 cut(s) 712, 906, 1464, 1569, 1618
ScaI AGTACT 1 cut(s) 833
SchI GAGTC 1 cut(s) 1049
ScrFI CCNGG 1 cut(s) 789
SduI GDGCHC 1 cut(s) 682
SfaNI GCATC 5 cut(s) 1122, 1441, 1504, 1546, 1565
SfuI TTCGAA 1 cut(s) 747
SmiMI CAYNNNNRTG 2 cut(s) 1437, 1662
SmlI CTYRAG 5 cut(s) 430, 530, 923, 1037, 1051
SmoI CTYRAG 5 cut(s) 430, 530, 923, 1037, 1051
SnaBI TACGTA 1 cut(s) 227
Sse9I AATT 6 cut(s) 213, 314, 760, 1558, 1711, 1722
SsiI CCGC 4 cut(s) 1186, 1199, 1307, 1420
SspMI CTAG 6 cut(s) 261, 852, 1227, 1268, 1455, 1478
SstI GAGCTC 1 cut(s) 682
StyD4I CCNGG 1 cut(s) 787
StyI CCWWGG 1 cut(s) 248
TaaI ACNGT 4 cut(s) 1061, 1365, 1631, 1690
TaiI ACGT 6 cut(s) 30, 131, 229, 278, 1013, 1404
TaqI TCGA 7 cut(s) 77, 96, 218, 747, 978, 1088, 1172
TasI AATT 6 cut(s) 213, 314, 760, 1558, 1711, 1722
TatI WGTACW 1 cut(s) 831
TauI GCSGC 1 cut(s) 1188
TfiI GAWTC 5 cut(s) 5, 98, 200, 496, 1594
Tru1I TTAA 6 cut(s) 134, 555, 924, 1398, 1530, 1608
Tru9I TTAA 6 cut(s) 134, 555, 924, 1398, 1530, 1608
TscAI CASTG 3 cut(s) 325, 1128, 1636
TseI GCWGC 8 cut(s) 449, 647, 656, 848, 1025, 1092, 1451, 1534
TspDTI ATGAA 3 cut(s) 24, 137, 773
TspGWI ACGGA 1 cut(s) 1530
TspRI CASTG 3 cut(s) 325, 1128, 1636
Vha464I CTTAAG 1 cut(s) 923
VspI ATTAAT 1 cut(s) 134
XapI RAATTY 2 cut(s) 314, 760
XceI RCATGY 2 cut(s) 1077, 1667
XmiI GTMKAC 1 cut(s) 1080
XmnI GAANNNNTTC 1 cut(s) 873
XspI CTAG 6 cut(s) 261, 852, 1227, 1268, 1455, 1478
ZrmI AGTACT 1 cut(s) 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.