Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007009

Physical Location & Seq

Genomic Coordinates Forward (+)

24143097 .. 24144040

Gene Structure 944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG232700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGATGAATAATGCTCAAGCACCACAAAATGGTTTCAAGCCAACATCATTCACCGGCATGAATCAAATGTCAGTTAATAACCCACATCAGTCTACATATGGTTTCATGGCTCAAAATGGTGCTGCATACGCTCATTTGACAACTGGGACTTCTCGTCCCTCTCAGCCTCCATCTCCGAAACAATTGAGAAGTGAAGTGGCTTCATCCACATCTAGTGTGGCAGCTCATGCTTATGAAGTAAAGACAATAGGCTATTCAAATGGTTCTGTAATTAATCCCAACGCAGTATCTTACCATGGCGCACTGCAGGAAGATTTACTCAGTATGGGGAAACGGTACCAGAGTTCAAATAAAGGCAAAGTTGAACATGGAGGCTCAAATGAGGAATTTGATTCAAACAGCTTTCCAGAATCTAGGAATTATGTTGTAGGTCCAGGTGTAGGAGTTGCTGGACGGGAAAATGGCCACTTAGTTTCTCATTCCGGAGTAGGGACTGCCTTTTGTCCAAGCCCTCAGAATAGCTTATATTCTGCTGCCCCCACTCTATATTGTGAAGCCAAACAGAGTTTTACCAATACAGAAGTCAATGAATGTACAAGCAGCATTGAGAAGTCTGCTGAAACTGAAAGTGAGTTCACTAATTCCTGTGAGCTGATTGAGAGCAGAAAGACCAAATATCGGTTCATGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

230

Amino Acids

24.77

Weight (kDa)

6.38

Isoelectric Point (pI)

54.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27580 AT3G27580
fragaria_vesca	FvH4_6g51490 FvH4_6g51490 FvH4_6g51490
malus_domestica	MD09G1025200.v1.1 MD09G1026700.v1.1 MD17G1026400.v1.1
prunus_persica	Prupe.3G292300_v2.0.a1
pyrus_communis	pycom111g02080 pycom17g02150
rosa_chinensis	RchiOBHm_Chr2g0173131
rosa_laevigata	RLG00000022161
rosa_multiflora	Rmu_co8426677.1_g000001 Rmu_sc0020537.1_g000003 Rmu_sc0022265.1_g000001 Rmu_sc0035718.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079210
rosa_rugosa	Rorug02G0565500
rosa_samantha	Rh2AG645600 Rh2BG656300 Rh2CG621400 Rh2DG669700 Rh5CG232700
rosa_wichuraiana	Rw2G053020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	336
AccB1I	GGYRCC	1 cut(s)	336
AccB7I	CCANNNNNTGG	1 cut(s)	29
AccI	GTMKAC	1 cut(s)	92
AccIII	TCCGGA	1 cut(s)	482
AcoI	YGGCCR	1 cut(s)	463
AcsI	RAATTY	1 cut(s)	386
AfaI	GTAC	2 cut(s)	338, 595
AfiI	CCNNNNNNNGG	4 cut(s)	29, 440, 489, 678
AgsI	TTSAA	5 cut(s)	37, 258, 348, 365, 396
AhdI	GACNNNNNGTC	1 cut(s)	153
AjnI	CCWGG	1 cut(s)	433
AjuI	GAANNNNNNNTTGG	1 cut(s)	665
AluBI	AGCT	4 cut(s)	224, 402, 522, 652
AluI	AGCT	4 cut(s)	224, 402, 522, 652
Aor13HI	TCCGGA	1 cut(s)	482
AoxI	GGCC	1 cut(s)	463
ApeKI	GCWGC	4 cut(s)	122, 221, 533, 600
ApoI	RAATTY	1 cut(s)	386
AseI	ATTAAT	1 cut(s)	273
Asp718I	GGTACC	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	431
AsuHPI	GGTGA	1 cut(s)	43
AvaII	GGWCC	1 cut(s)	431
BaeI	ACNNNNGTAYC	2 cut(s)	328, 361
BalI	TGGCCA	1 cut(s)	465
BanI	GGYRCC	1 cut(s)	336
BbvI	GCAGC	4 cut(s)	109, 233, 520, 612
BccI	CCATC	1 cut(s)	178
BciT130I	CCWGG	1 cut(s)	435
BfaI	CTAG	3 cut(s)	213, 414, 691
BfmI	CTRYAG	1 cut(s)	305
BisI	GCNGC	4 cut(s)	123, 222, 534, 601
BlsI	GCNGC	4 cut(s)	124, 223, 535, 602
Bme1390I	CCNGG	1 cut(s)	435
Bme18I	GGWCC	1 cut(s)	431
BmeRI	GACNNNNNGTC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	431
BmiI	GGNNCC	1 cut(s)	338
BmrFI	CCNGG	1 cut(s)	435
BmrI	ACTGGG	1 cut(s)	153
BmuI	ACTGGG	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	295
BsaWI	WCCGGW	1 cut(s)	482
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 440, 489, 678
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	148
BseAI	TCCGGA	1 cut(s)	482
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	1 cut(s)	203
BseLI	CCNNNNNNNGG	4 cut(s)	29, 440, 489, 678
BseMII	CTCAG	3 cut(s)	176, 334, 527
BseNI	ACTGG	1 cut(s)	148
BseXI	GCAGC	4 cut(s)	109, 233, 520, 612
BshFI	GGCC	1 cut(s)	465
BshNI	GGYRCC	1 cut(s)	336
BsiSI	CCGG	2 cut(s)	54, 483
BslFI	GGGAC	3 cut(s)	141, 160, 505
BslI	CCNNNNNNNGG	4 cut(s)	29, 440, 489, 678
BsmFI	GGGAC	3 cut(s)	141, 160, 505
BsnI	GGCC	1 cut(s)	465
Bsp13I	TCCGGA	1 cut(s)	482
Bsp1407I	TGTACA	1 cut(s)	593
Bsp19I	CCATGG	1 cut(s)	295
BspANI	GGCC	1 cut(s)	465
BspCNI	CTCAG	3 cut(s)	175, 333, 526
BspEI	TCCGGA	1 cut(s)	482
BspLI	GGNNCC	1 cut(s)	338
BspMAI	CTGCAG	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	53
BsrGI	TGTACA	1 cut(s)	593
BsrI	ACTGG	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	295
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	1 cut(s)	336
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstAUI	TGTACA	1 cut(s)	593
BstDEI	CTNAG	4 cut(s)	162, 320, 469, 513
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	302
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 227
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	1 cut(s)	433
BstSFI	CTRYAG	1 cut(s)	305
BstV1I	GCAGC	4 cut(s)	109, 233, 520, 612
BsuRI	GGCC	1 cut(s)	465
BtgI	CCRYGG	1 cut(s)	295
BtsCI	GGATG	1 cut(s)	203
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	302
CfoI	GCGC	1 cut(s)	302
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	431
Csp6I	GTAC	2 cut(s)	337, 594
CviAII	CATG	6 cut(s)	58, 106, 227, 296, 368, 685
CviQI	GTAC	2 cut(s)	337, 594
DdeI	CTNAG	4 cut(s)	162, 320, 469, 513
DriI	GACNNNNNGTC	1 cut(s)	153
EaeI	YGGCCR	1 cut(s)	463
Eam1105I	GACNNNNNGTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	6 cut(s)	61, 109, 230, 299, 371, 688
FaqI	GGGAC	3 cut(s)	141, 160, 505
FatI	CATG	6 cut(s)	57, 105, 226, 295, 367, 684
FauNDI	CATATG	1 cut(s)	97
FblI	GTMKAC	1 cut(s)	92
Fnu4HI	GCNGC	4 cut(s)	123, 222, 534, 601
FokI	GGATG	1 cut(s)	190
Fsp4HI	GCNGC	4 cut(s)	123, 222, 534, 601
FspBI	CTAG	3 cut(s)	213, 414, 691
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	4 cut(s)	123, 222, 534, 601
HaeIII	GGCC	1 cut(s)	465
HapII	CCGG	2 cut(s)	54, 483
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	6 cut(s)	61, 109, 230, 299, 371, 688
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HinfI	GANTC	3 cut(s)	61, 392, 410
HpaII	CCGG	2 cut(s)	54, 483
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	2 cut(s)	93, 636
Hpy188I	TCNGA	2 cut(s)	177, 516
Hpy188III	TCNNGA	2 cut(s)	407, 483
Hpy8I	GTNNAC	2 cut(s)	93, 636
HpyCH4III	ACNGT	1 cut(s)	336
HpyCH4V	TGCA	2 cut(s)	125, 307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 227
HpyF3I	CTNAG	4 cut(s)	162, 320, 469, 513
Hsp92II	CATG	6 cut(s)	61, 109, 230, 299, 371, 688
HspAI	GCGC	1 cut(s)	300
Kpn2I	TCCGGA	1 cut(s)	482
KpnI	GGTACC	1 cut(s)	340
Lsp1109I	GCAGC	4 cut(s)	109, 233, 520, 612
MaeI	CTAG	3 cut(s)	213, 414, 691
MboII	GAAGA	1 cut(s)	323
MfeI	CAATTG	1 cut(s)	182
MlsI	TGGCCA	1 cut(s)	465
MluCI	AATT	5 cut(s)	182, 270, 386, 418, 640
MluNI	TGGCCA	1 cut(s)	465
MnlI	CCTC	5 cut(s)	169, 177, 365, 376, 522
Mox20I	TGGCCA	1 cut(s)	465
MroI	TCCGGA	1 cut(s)	482
MscI	TGGCCA	1 cut(s)	465
MseI	TTAA	2 cut(s)	75, 273
MslI	CAYNNNNRTG	2 cut(s)	56, 231
Msp20I	TGGCCA	1 cut(s)	465
MspI	CCGG	2 cut(s)	54, 483
MspR9I	CCNGG	1 cut(s)	435
MunI	CAATTG	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	2 cut(s)	128, 227
NcoI	CCATGG	1 cut(s)	295
NdeI	CATATG	1 cut(s)	97
NlaIII	CATG	6 cut(s)	61, 109, 230, 299, 371, 688
NlaIV	GGNNCC	1 cut(s)	338
PfeI	GAWTC	3 cut(s)	61, 392, 410
PflMI	CCANNNNNTGG	1 cut(s)	29
PkrI	GCNGC	4 cut(s)	124, 223, 535, 602
PshBI	ATTAAT	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	1 cut(s)	338
PspPI	GGNCC	1 cut(s)	431
PstI	CTGCAG	1 cut(s)	309
RsaI	GTAC	2 cut(s)	338, 595
RsaNI	GTAC	2 cut(s)	337, 594
RseI	CAYNNNNRTG	2 cut(s)	56, 231
SaqAI	TTAA	2 cut(s)	75, 273
SatI	GCNGC	4 cut(s)	123, 222, 534, 601
Sau96I	GGNCC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	435
SetI	ASST	6 cut(s)	226, 404, 433, 439, 524, 654
SfcI	CTRYAG	1 cut(s)	305
SinI	GGWCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	2 cut(s)	56, 231
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
Sse9I	AATT	5 cut(s)	182, 270, 386, 418, 640
SspMI	CTAG	3 cut(s)	213, 414, 691
StyD4I	CCNGG	1 cut(s)	433
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	336
TasI	AATT	5 cut(s)	182, 270, 386, 418, 640
TatI	WGTACW	1 cut(s)	593
TfiI	GAWTC	3 cut(s)	61, 392, 410
Tru1I	TTAA	2 cut(s)	75, 273
Tru9I	TTAA	2 cut(s)	75, 273
TscAI	CASTG	1 cut(s)	309
TseI	GCWGC	4 cut(s)	122, 221, 533, 600
TspDTI	ATGAA	7 cut(s)	20, 74, 94, 192, 249, 603, 673
TspRI	CASTG	1 cut(s)	309
Van91I	CCANNNNNTGG	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	431
VspI	ATTAAT	1 cut(s)	273
XapI	RAATTY	1 cut(s)	386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	92
XspI	CTAG	3 cut(s)	213, 414, 691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.