Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035718.1

Orthogroup ID

OG0007009

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1213

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035718.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 677 bp

ctgctctgctctctgatcagtgggagttcctgtgtgagagcaatggattcactgtctgacggggtcgtttctgttccaaaggctcgctattcggcacctgagggaggcaacaaccctagttcgacacctgggacttctcgtccctctcagcctccatctccgaaacaattgagaagtgaagtggcttcatccacatccagtgtggctgctcatgcttatgaagtgaagacagtaggatattcaaatggttctgtaattaatcccaacaaggtacctaaccatggcgctctgcaggaagatttgctcagtatgggaaaacggtatcagagttcaaataaaggcaaagttgaacatggaggcccgaacgatgttcttgataaaccagccgaaacctcatttcagaacaaggtttctatggtggaagtaaaatcttccatccagcatcctgttgatgattctgaggaatttgattcaagcagcttaccagaatctaggaattatgttttaggtccaggtaaagaagttgctggacggaaaaatggccacttagtttctcattctggagtagggactgccttctgtccaagccctcagaatagtttatattctgctgcccccactctctattgtgaagccaaacagagttttaccaatacagaagtcagtgaatgtacaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

225

Amino Acids

23.66

Weight (kDa)

6.33

Isoelectric Point (pI)

57.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27580 AT3G27580
fragaria_vesca	FvH4_6g51490 FvH4_6g51490 FvH4_6g51490
malus_domestica	MD09G1025200.v1.1 MD09G1026700.v1.1 MD17G1026400.v1.1
prunus_persica	Prupe.3G292300_v2.0.a1
pyrus_communis	pycom111g02080 pycom17g02150
rosa_chinensis	RchiOBHm_Chr2g0173131
rosa_laevigata	RLG00000022161
rosa_multiflora	Rmu_co8426677.1_g000001 Rmu_sc0020537.1_g000003 Rmu_sc0022265.1_g000001 Rmu_sc0035718.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079210
rosa_rugosa	Rorug02G0565500
rosa_samantha	Rh2AG645600 Rh2BG656300 Rh2CG621400 Rh2DG669700 Rh5CG232700
rosa_wichuraiana	Rw2G053020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	271
AccB1I	GGYRCC	2 cut(s)	94, 271
AcoI	YGGCCR	1 cut(s)	541
AcsI	RAATTY	1 cut(s)	464
AfaI	GTAC	2 cut(s)	273, 673
AfiI	CCNNNNNNNGG	2 cut(s)	104, 281
AgsI	TTSAA	4 cut(s)	243, 333, 350, 474
AhdI	GACNNNNNGTC	1 cut(s)	138
AjnI	CCWGG	2 cut(s)	127, 511
AluBI	AGCT	1 cut(s)	480
AluI	AGCT	1 cut(s)	480
AoxI	GGCC	2 cut(s)	358, 541
ApeKI	GCWGC	3 cut(s)	206, 477, 611
ApoI	RAATTY	1 cut(s)	464
AseI	ATTAAT	1 cut(s)	258
Asp718I	GGTACC	1 cut(s)	271
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	2 cut(s)	359, 509
AvaII	GGWCC	1 cut(s)	509
AxyI	CCTNAGG	1 cut(s)	99
BalI	TGGCCA	1 cut(s)	543
BanI	GGYRCC	2 cut(s)	94, 271
BbsI	GAAGAC	1 cut(s)	233
BbvI	GCAGC	3 cut(s)	193, 489, 598
BccI	CCATC	2 cut(s)	163, 443
BciT130I	CCWGG	2 cut(s)	129, 513
BclI	TGATCA	1 cut(s)	15
BfaI	CTAG	2 cut(s)	117, 492
BfmI	CTRYAG	1 cut(s)	290
BfoI	RGCGCY	1 cut(s)	288
BisI	GCNGC	3 cut(s)	207, 478, 612
BlsI	GCNGC	3 cut(s)	208, 479, 613
Bme1390I	CCNGG	2 cut(s)	129, 513
Bme18I	GGWCC	1 cut(s)	509
BmeRI	GACNNNNNGTC	1 cut(s)	138
BmgT120I	GGNCC	2 cut(s)	359, 509
BmiI	GGNNCC	2 cut(s)	96, 273
BmrFI	CCNGG	2 cut(s)	129, 513
BmsI	GCATC	1 cut(s)	451
BpiI	GAAGAC	1 cut(s)	233
BpmI	CTGGAG	1 cut(s)	582
BsaJI	CCNNGG	2 cut(s)	128, 280
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 281
Bse1I	ACTGG	1 cut(s)	198
Bse21I	CCTNAGG	1 cut(s)	99
Bse3DI	GCAATG	1 cut(s)	48
BseBI	CCWGG	2 cut(s)	129, 513
BseDI	CCNNGG	2 cut(s)	128, 280
BseGI	GGATG	4 cut(s)	188, 194, 435, 442
BseLI	CCNNNNNNNGG	2 cut(s)	104, 281
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	5 cut(s)	90, 161, 319, 450, 605
BseNI	ACTGG	1 cut(s)	198
BseXI	GCAGC	3 cut(s)	193, 489, 598
BshFI	GGCC	2 cut(s)	360, 543
BshNI	GGYRCC	2 cut(s)	94, 271
BslFI	GGGAC	3 cut(s)	126, 145, 583
BslI	CCNNNNNNNGG	2 cut(s)	104, 281
BsmFI	GGGAC	3 cut(s)	126, 145, 583
BsnI	GGCC	2 cut(s)	360, 543
Bsp1407I	TGTACA	1 cut(s)	671
Bsp143I	GATC	1 cut(s)	15
Bsp19I	CCATGG	1 cut(s)	280
BspANI	GGCC	2 cut(s)	360, 543
BspCNI	CTCAG	5 cut(s)	91, 160, 318, 451, 604
BspLI	GGNNCC	2 cut(s)	96, 273
BspMAI	CTGCAG	1 cut(s)	294
BspT107I	GGYRCC	2 cut(s)	94, 271
BsrDI	GCAATG	1 cut(s)	48
BsrGI	TGTACA	1 cut(s)	671
BsrI	ACTGG	1 cut(s)	198
BssECI	CCNNGG	2 cut(s)	128, 280
BssMI	GATC	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	280
Bst2UI	CCWGG	2 cut(s)	129, 513
Bst4CI	ACNGT	3 cut(s)	54, 232, 321
BstAUI	TGTACA	1 cut(s)	671
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	6 cut(s)	99, 147, 305, 459, 547, 591
BstDSI	CCRYGG	1 cut(s)	280
BstENI	CCTNNNNNAGG	1 cut(s)	102
BstF5I	GGATG	4 cut(s)	188, 194, 435, 442
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	1 cut(s)	18
BstMBI	GATC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	2 cut(s)	129, 513
BstSCI	CCNGG	2 cut(s)	127, 511
BstSFI	CTRYAG	1 cut(s)	290
BstV1I	GCAGC	3 cut(s)	193, 489, 598
BstV2I	GAAGAC	1 cut(s)	233
Bsu36I	CCTNAGG	1 cut(s)	99
BsuRI	GGCC	2 cut(s)	360, 543
BtgI	CCRYGG	1 cut(s)	280
BtsCI	GGATG	4 cut(s)	188, 194, 435, 442
BtsIMutI	CAGTG	4 cut(s)	25, 50, 205, 670
Cac8I	GCNNGC	1 cut(s)	85
CfoI	GCGC	1 cut(s)	287
Cfr13I	GGNCC	2 cut(s)	359, 509
Csp6I	GTAC	2 cut(s)	272, 672
CviAII	CATG	3 cut(s)	212, 281, 353
CviQI	GTAC	2 cut(s)	272, 672
DdeI	CTNAG	6 cut(s)	99, 147, 305, 459, 547, 591
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
DriI	GACNNNNNGTC	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	541
Eam1105I	GACNNNNNGTC	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	509
Eco81I	CCTNAGG	1 cut(s)	99
EcoNI	CCTNNNNNAGG	1 cut(s)	102
EcoRII	CCWGG	2 cut(s)	127, 511
EcoT14I	CCWWGG	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	3 cut(s)	215, 284, 356
FaiI	YATR	8 cut(s)	213, 219, 282, 311, 354, 416, 501, 604
FaqI	GGGAC	3 cut(s)	126, 145, 583
FatI	CATG	3 cut(s)	211, 280, 352
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	3 cut(s)	207, 478, 612
FokI	GGATG	4 cut(s)	175, 181, 422, 429
Fsp4HI	GCNGC	3 cut(s)	207, 478, 612
FspBI	CTAG	2 cut(s)	117, 492
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	3 cut(s)	207, 478, 612
GsuI	CTGGAG	1 cut(s)	582
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	2 cut(s)	360, 543
HhaI	GCGC	1 cut(s)	287
Hin1II	CATG	3 cut(s)	215, 284, 356
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HinfI	GANTC	4 cut(s)	47, 455, 470, 488
Hpy188I	TCNGA	7 cut(s)	15, 58, 162, 327, 402, 460, 594
Hpy188III	TCNNGA	2 cut(s)	374, 561
HpyAV	CCTTC	1 cut(s)	586
HpyCH4III	ACNGT	3 cut(s)	54, 232, 321
HpyCH4V	TGCA	1 cut(s)	292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	6 cut(s)	99, 147, 305, 459, 547, 591
Hsp92II	CATG	3 cut(s)	215, 284, 356
HspAI	GCGC	1 cut(s)	285
KpnI	GGTACC	1 cut(s)	275
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	1 cut(s)	15
Lsp1109I	GCAGC	3 cut(s)	193, 489, 598
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	2 cut(s)	117, 492
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	3 cut(s)	238, 308, 423
MfeI	CAATTG	1 cut(s)	167
MlsI	TGGCCA	1 cut(s)	543
MluCI	AATT	4 cut(s)	167, 255, 464, 496
MluNI	TGGCCA	1 cut(s)	543
MnlI	CCTC	8 cut(s)	94, 98, 154, 162, 350, 403, 454, 600
Mox20I	TGGCCA	1 cut(s)	543
MscI	TGGCCA	1 cut(s)	543
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	1 cut(s)	216
Msp20I	TGGCCA	1 cut(s)	543
MspR9I	CCNGG	2 cut(s)	129, 513
MunI	CAATTG	1 cut(s)	167
MvaI	CCWGG	2 cut(s)	129, 513
MwoI	GCNNNNNNNGC	1 cut(s)	212
NcoI	CCATGG	1 cut(s)	280
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	3 cut(s)	215, 284, 356
NlaIV	GGNNCC	2 cut(s)	96, 273
PfeI	GAWTC	4 cut(s)	47, 455, 470, 488
PflFI	GACNNNGTC	1 cut(s)	62
PkrI	GCNGC	3 cut(s)	208, 479, 613
PshBI	ATTAAT	1 cut(s)	258
Psp6I	CCWGG	2 cut(s)	127, 511
PspGI	CCWGG	2 cut(s)	127, 511
PspN4I	GGNNCC	2 cut(s)	96, 273
PspPI	GGNCC	2 cut(s)	359, 509
PstI	CTGCAG	1 cut(s)	294
PsyI	GACNNNGTC	1 cut(s)	62
RsaI	GTAC	2 cut(s)	273, 673
RsaNI	GTAC	2 cut(s)	272, 672
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	3 cut(s)	207, 478, 612
Sau3AI	GATC	1 cut(s)	15
Sau96I	GGNCC	2 cut(s)	359, 509
ScrFI	CCNGG	2 cut(s)	129, 513
SetI	ASST	9 cut(s)	100, 130, 273, 277, 395, 411, 482, 511, 517
SfaNI	GCATC	1 cut(s)	451
SfcI	CTRYAG	1 cut(s)	290
SinI	GGWCC	1 cut(s)	509
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	4 cut(s)	167, 255, 464, 496
SspMI	CTAG	2 cut(s)	117, 492
StyD4I	CCNGG	2 cut(s)	127, 511
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	3 cut(s)	54, 232, 321
TaqI	TCGA	1 cut(s)	122
TasI	AATT	4 cut(s)	167, 255, 464, 496
TatI	WGTACW	1 cut(s)	671
TfiI	GAWTC	4 cut(s)	47, 455, 470, 488
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	4 cut(s)	25, 57, 205, 670
TseI	GCWGC	3 cut(s)	206, 477, 611
TspDTI	ATGAA	2 cut(s)	177, 234
TspGWI	ACGGA	1 cut(s)	547
TspRI	CASTG	4 cut(s)	25, 57, 205, 670
Tth111I	GACNNNGTC	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	509
VspI	ATTAAT	1 cut(s)	258
XagI	CCTNNNNNAGG	1 cut(s)	102
XapI	RAATTY	1 cut(s)	464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XspI	CTAG	2 cut(s)	117, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.