Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8426677.1

Orthogroup ID

OG0007009

Physical Location & Seq

Genomic Coordinates Forward (+)

160 .. 861

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8426677.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atggagacaaagaaatcagcatattgtgttcagcctgcgtgcatcgagccaacttgtgtaatgcagccagattgcattacaccagcgtgctttgctccacgctttttctcaagcaagcccaagaaggacaagaaaaagaccaaacccaagaatgatgtatataatcaagtgagccctctccctgagcttattgcagaacccactagtgctagatcaatgtcctttgtgggaacacacgagtatctggcgcctgaaataatcaaaggtgaaggtcatggcagtgctgtggattggtggacgtttgggatctttctctatgaacttttatttggcaaaactccattcaagggagcagggaaccgagctactttgtttaacgttgtcgggcagcctttgagatttccagagtcgcccagtgtcagctttgcagcaagggacttgatcagaggtctacttgtgaaagagccacagcatcgtcttgcttaccggcgtggggctacagaagtcaaacagcatccttttttccagagtgtgaattgggcgctaatccggtgtacaaatccgccttcggtgccagcaaaacagaacctgttggacacttctccaagacctgatactccgaaagcagccggcacggacgggaaggtaccgggtgttgatttgaagccttctggtaattatatagagattgatttcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

233

Amino Acids

25.83

Weight (kDa)

9.19

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27580 AT3G27580
fragaria_vesca	FvH4_6g51490 FvH4_6g51490 FvH4_6g51490
malus_domestica	MD09G1025200.v1.1 MD09G1026700.v1.1 MD17G1026400.v1.1
prunus_persica	Prupe.3G292300_v2.0.a1
pyrus_communis	pycom111g02080 pycom17g02150
rosa_chinensis	RchiOBHm_Chr2g0173131
rosa_laevigata	RLG00000022161
rosa_multiflora	Rmu_co8426677.1_g000001 Rmu_sc0020537.1_g000003 Rmu_sc0022265.1_g000001 Rmu_sc0035718.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079210
rosa_rugosa	Rorug02G0565500
rosa_samantha	Rh2AG645600 Rh2BG656300 Rh2CG621400 Rh2DG669700 Rh5CG232700
rosa_wichuraiana	Rw2G053020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	646
AccB1I	GGYRCC	3 cut(s)	247, 571, 646
AccI	GTMKAC	1 cut(s)	451
AciI	CCGC	1 cut(s)	563
AclI	AACGTT	1 cut(s)	378
AclWI	GGATC	1 cut(s)	314
AcyI	GRCGYC	1 cut(s)	248
AfaI	GTAC	2 cut(s)	556, 648
AfiI	CCNNNNNNNGG	2 cut(s)	347, 493
AgsI	TTSAA	2 cut(s)	346, 664
AhlI	ACTAGT	1 cut(s)	203
AjuI	GAANNNNNNNTTGG	2 cut(s)	312, 344
AleI	CACNNNNGTG	1 cut(s)	85
AluBI	AGCT	3 cut(s)	187, 365, 423
AluI	AGCT	3 cut(s)	187, 365, 423
AlwI	GGATC	1 cut(s)	314
AlwNI	CAGNNNCTG	1 cut(s)	589
ApeKI	GCWGC	4 cut(s)	64, 388, 428, 626
Asp718I	GGTACC	1 cut(s)	646
AspLEI	GCGC	2 cut(s)	250, 544
AsuC2I	CCSGG	1 cut(s)	651
AsuHPI	GGTGA	1 cut(s)	278
BaeI	ACNNNNGTAYC	2 cut(s)	224, 257
BanI	GGYRCC	3 cut(s)	247, 571, 646
BanII	GRGCYC	1 cut(s)	176
BauI	CACGAG	1 cut(s)	236
BbvI	GCAGC	4 cut(s)	76, 400, 440, 638
BclI	TGATCA	1 cut(s)	441
BcnI	CCSGG	1 cut(s)	651
BcuI	ACTAGT	1 cut(s)	203
BfaI	CTAG	2 cut(s)	204, 210
BfmI	CTRYAG	1 cut(s)	498
BfoI	RGCGCY	2 cut(s)	251, 545
BisI	GCNGC	4 cut(s)	65, 389, 429, 627
BlsI	GCNGC	4 cut(s)	66, 390, 430, 628
Bme1390I	CCNGG	1 cut(s)	651
BmiI	GGNNCC	4 cut(s)	249, 359, 573, 648
BmrFI	CCNGG	1 cut(s)	651
BmrI	ACTGGG	1 cut(s)	408
BmsI	GCATC	3 cut(s)	51, 481, 523
BmuI	ACTGGG	1 cut(s)	408
Bpu10I	CCTNAGC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	651
BsaHI	GRCGYC	1 cut(s)	248
BsaWI	WCCGGW	1 cut(s)	549
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 493
Bse118I	RCCGGY	2 cut(s)	486, 629
Bse1I	ACTGG	1 cut(s)	414
BseGI	GGATG	1 cut(s)	514
BseLI	CCNNNNNNNGG	2 cut(s)	347, 493
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	414
BseXI	GCAGC	4 cut(s)	76, 400, 440, 638
BshNI	GGYRCC	3 cut(s)	247, 571, 646
BsiSI	CCGG	4 cut(s)	487, 550, 630, 650
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	2 cut(s)	347, 493
BsmFI	GGGAC	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp1407I	TGTACA	1 cut(s)	554
Bsp143I	GATC	3 cut(s)	212, 306, 441
BspACI	CCGC	1 cut(s)	563
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	4 cut(s)	249, 359, 573, 648
BspPI	GGATC	1 cut(s)	314
BspT107I	GGYRCC	3 cut(s)	247, 571, 646
BsrFI	RCCGGY	2 cut(s)	486, 629
BsrGI	TGTACA	1 cut(s)	554
BsrI	ACTGG	1 cut(s)	414
BssAI	RCCGGY	2 cut(s)	486, 629
BssMI	GATC	3 cut(s)	212, 306, 441
BssNI	GRCGYC	1 cut(s)	248
BssSI	CACGAG	1 cut(s)	236
Bst2BI	CACGAG	1 cut(s)	236
BstACI	GRCGYC	1 cut(s)	248
BstAUI	TGTACA	1 cut(s)	554
BstC8I	GCNNGC	6 cut(s)	36, 40, 88, 116, 576, 631
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	514
BstH2I	RGCGCY	2 cut(s)	251, 545
BstHHI	GCGC	2 cut(s)	250, 544
BstKTI	GATC	3 cut(s)	215, 309, 444
BstMBI	GATC	3 cut(s)	212, 306, 441
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 571
BstSCI	CCNGG	1 cut(s)	649
BstSFI	CTRYAG	1 cut(s)	498
BstV1I	GCAGC	4 cut(s)	76, 400, 440, 638
BstX2I	RGATCY	1 cut(s)	306
BstYI	RGATCY	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	514
BtsI	GCAGTG	1 cut(s)	286
BtsIMutI	CAGTG	2 cut(s)	286, 421
Cac8I	GCNNGC	6 cut(s)	36, 40, 88, 116, 576, 631
CaiI	CAGNNNCTG	1 cut(s)	589
CfoI	GCGC	2 cut(s)	250, 544
Cfr10I	RCCGGY	2 cut(s)	486, 629
Csp6I	GTAC	2 cut(s)	555, 647
CviAII	CATG	1 cut(s)	275
CviQI	GTAC	2 cut(s)	555, 647
DdeI	CTNAG	1 cut(s)	183
DinI	GGCGCC	1 cut(s)	249
DpnI	GATC	3 cut(s)	214, 308, 443
DpnII	GATC	3 cut(s)	212, 306, 441
EciI	GGCGGA	1 cut(s)	552
Eco24I	GRGCYC	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	176
EgeI	GGCGCC	1 cut(s)	249
EheI	GGCGCC	1 cut(s)	249
FaeI	CATG	1 cut(s)	278
FaiI	YATR	7 cut(s)	22, 160, 162, 276, 318, 681, 683
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	1 cut(s)	274
FbaI	TGATCA	1 cut(s)	441
FblI	GTMKAC	1 cut(s)	451
Fnu4HI	GCNGC	4 cut(s)	65, 389, 429, 627
FokI	GGATG	1 cut(s)	501
FriOI	GRGCYC	1 cut(s)	176
Fsp4HI	GCNGC	4 cut(s)	65, 389, 429, 627
FspBI	CTAG	2 cut(s)	204, 210
GlaI	GCGC	2 cut(s)	249, 543
GluI	GCNGC	4 cut(s)	65, 389, 429, 627
HaeII	RGCGCY	2 cut(s)	251, 545
HapII	CCGG	4 cut(s)	487, 550, 630, 650
HhaI	GCGC	2 cut(s)	250, 544
Hin1I	GRCGYC	1 cut(s)	248
Hin1II	CATG	1 cut(s)	278
Hin6I	GCGC	2 cut(s)	248, 542
HinP1I	GCGC	2 cut(s)	248, 542
HinfI	GANTC	1 cut(s)	407
HpaII	CCGG	4 cut(s)	487, 550, 630, 650
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	3 cut(s)	297, 452, 555
Hpy188I	TCNGA	2 cut(s)	446, 621
Hpy188III	TCNNGA	2 cut(s)	404, 526
Hpy8I	GTNNAC	3 cut(s)	297, 452, 555
HpyAV	CCTTC	5 cut(s)	118, 263, 576, 637, 678
HpyCH4IV	ACGT	2 cut(s)	299, 378
HpyCH4V	TGCA	5 cut(s)	42, 64, 75, 194, 428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 571
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	2 cut(s)	299, 378
Hsp92I	GRCGYC	1 cut(s)	248
Hsp92II	CATG	1 cut(s)	278
HspAI	GCGC	2 cut(s)	248, 542
KasI	GGCGCC	1 cut(s)	247
KpnI	GGTACC	1 cut(s)	650
KroI	GCCGGC	1 cut(s)	629
KroNI	GCCGGC	1 cut(s)	631
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	3 cut(s)	212, 306, 441
LmnI	GCTCC	2 cut(s)	100, 350
Lsp1109I	GCAGC	4 cut(s)	76, 400, 440, 638
LweI	GCATC	3 cut(s)	51, 481, 523
MaeI	CTAG	2 cut(s)	204, 210
MaeII	ACGT	2 cut(s)	299, 378
MalI	GATC	3 cut(s)	214, 308, 443
MboI	GATC	3 cut(s)	212, 306, 441
MflI	RGATCY	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	2 cut(s)	535, 676
Mly113I	GGCGCC	1 cut(s)	248
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	573
MnlI	CCTC	2 cut(s)	186, 440
MroNI	GCCGGC	1 cut(s)	629
MseI	TTAA	1 cut(s)	375
MslI	CAYNNNNRTG	2 cut(s)	85, 279
MspI	CCGG	4 cut(s)	487, 550, 630, 650
MspR9I	CCNGG	1 cut(s)	651
MwoI	GCNNNNNNNGC	2 cut(s)	92, 571
NaeI	GCCGGC	1 cut(s)	631
NarI	GGCGCC	1 cut(s)	248
NciI	CCSGG	1 cut(s)	651
NdeII	GATC	3 cut(s)	212, 306, 441
NgoMIV	GCCGGC	1 cut(s)	629
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	4 cut(s)	249, 359, 573, 648
OliI	CACNNNNGTG	1 cut(s)	85
PdiI	GCCGGC	1 cut(s)	631
PkrI	GCNGC	4 cut(s)	66, 390, 430, 628
PleI	GAGTC	1 cut(s)	415
PluTI	GGCGCC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	415
Psp1406I	AACGTT	1 cut(s)	378
PspN4I	GGNNCC	4 cut(s)	249, 359, 573, 648
PstNI	CAGNNNCTG	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	306
RsaI	GTAC	2 cut(s)	556, 648
RsaNI	GTAC	2 cut(s)	555, 647
RseI	CAYNNNNRTG	2 cut(s)	85, 279
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	4 cut(s)	65, 389, 429, 627
Sau3AI	GATC	3 cut(s)	212, 306, 441
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	651
SduI	GDGCHC	1 cut(s)	176
SfaNI	GCATC	3 cut(s)	51, 481, 523
SfcI	CTRYAG	1 cut(s)	498
SfoI	GGCGCC	1 cut(s)	249
SmiMI	CAYNNNNRTG	2 cut(s)	85, 279
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
SpeI	ACTAGT	1 cut(s)	203
Sse9I	AATT	2 cut(s)	535, 676
SsiI	CCGC	1 cut(s)	563
SspDI	GGCGCC	1 cut(s)	247
SspMI	CTAG	2 cut(s)	204, 210
StyD4I	CCNGG	1 cut(s)	649
TaiI	ACGT	2 cut(s)	302, 381
TaqI	TCGA	1 cut(s)	45
TasI	AATT	2 cut(s)	535, 676
TatI	WGTACW	1 cut(s)	554
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	2 cut(s)	286, 421
TseI	GCWGC	4 cut(s)	64, 388, 428, 626
TspDTI	ATGAA	1 cut(s)	333
TspGWI	ACGGA	1 cut(s)	650
TspRI	CASTG	2 cut(s)	286, 421
XmiI	GTMKAC	1 cut(s)	451
XspI	CTAG	2 cut(s)	204, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.