Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022265.1

Orthogroup ID

OG0007009

Physical Location & Seq

Genomic Coordinates Reverse (-)

1597 .. 2511

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022265.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

atgctaataagaataatttattcatcgcacaggttttatgtggctgaagttctacttgctttggagtatttgcatatgcttgggatcatttacagagacctcaaaccagagaatgttttagtgagggaagatgggcatataatgctttcagattttgacctttcattaagatgtgctgtttcccccaccctggttagatcttcaaactcaggcatggagacaaagaaatcagcatattgtgttcagcctgcgtgcatcgagccaacttgtgtaatgcagccagattgcattacaccagcgtgctttgctccacgctttttctcaagcaagcccaagaaggacaagaaaaagaccaaacccaagaatgatgtatataatcaagtgagccctctccctgagcttattgcagaacccactagtgctagatcaatgtcctttgtgggaacacacgagtatctggcgcctgaaataatcaaaggtgaaggtcatggcagtgctgtggattggtggacgtttgggatctttctctatgaacttttatttggcaaaactccattcaagggagcagggaaccgagctactttgtttaacgttgtcgggcagcctttgagatttccagagtcgcccagtgtcagctttgcagcaagggacttgatcagaggtctacttgtgaaagagccacagcatcgtcttgcttaccggcgtggggctacagaagtcaaacagcatccttttttccagagtgtgaattgggcgctaatccggtgtacaaatccgccttcggtgccagcaaaacagaacctgttggacacttctccaagacctgatactccgaaagcagccggcacggacgggaaggtaccgggtgttgatttgaagccttctggtaattatatagagattgatttcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

304

Amino Acids

33.96

Weight (kDa)

8.98

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27580 AT3G27580
fragaria_vesca	FvH4_6g51490 FvH4_6g51490 FvH4_6g51490
malus_domestica	MD09G1025200.v1.1 MD09G1026700.v1.1 MD17G1026400.v1.1
prunus_persica	Prupe.3G292300_v2.0.a1
pyrus_communis	pycom111g02080 pycom17g02150
rosa_chinensis	RchiOBHm_Chr2g0173131
rosa_laevigata	RLG00000022161
rosa_multiflora	Rmu_co8426677.1_g000001 Rmu_sc0020537.1_g000003 Rmu_sc0022265.1_g000001 Rmu_sc0035718.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079210
rosa_rugosa	Rorug02G0565500
rosa_samantha	Rh2AG645600 Rh2BG656300 Rh2CG621400 Rh2DG669700 Rh5CG232700
rosa_wichuraiana	Rw2G053020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	859
AccB1I	GGYRCC	3 cut(s)	460, 784, 859
AccI	GTMKAC	1 cut(s)	664
AciI	CCGC	1 cut(s)	776
AclI	AACGTT	1 cut(s)	591
AclWI	GGATC	2 cut(s)	92, 527
AcuI	CTGAAG	1 cut(s)	66
AcyI	GRCGYC	1 cut(s)	461
AfaI	GTAC	2 cut(s)	769, 861
AfiI	CCNNNNNNNGG	3 cut(s)	190, 560, 706
AgsI	TTSAA	3 cut(s)	204, 559, 877
AhlI	ACTAGT	1 cut(s)	416
AjnI	CCWGG	1 cut(s)	189
AjuI	GAANNNNNNNTTGG	2 cut(s)	525, 557
AleI	CACNNNNGTG	1 cut(s)	298
AluBI	AGCT	3 cut(s)	400, 578, 636
AluI	AGCT	3 cut(s)	400, 578, 636
Alw26I	GTCTC	2 cut(s)	90, 212
AlwI	GGATC	2 cut(s)	92, 527
AlwNI	CAGNNNCTG	1 cut(s)	802
ApeKI	GCWGC	4 cut(s)	277, 601, 641, 839
Asp718I	GGTACC	1 cut(s)	859
AspLEI	GCGC	2 cut(s)	463, 757
AsuC2I	CCSGG	1 cut(s)	864
AsuHPI	GGTGA	1 cut(s)	491
BaeI	ACNNNNGTAYC	2 cut(s)	437, 470
BanI	GGYRCC	3 cut(s)	460, 784, 859
BanII	GRGCYC	1 cut(s)	389
BauI	CACGAG	1 cut(s)	449
BbvI	GCAGC	4 cut(s)	289, 613, 653, 851
BccI	CCATC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	191
BclI	TGATCA	1 cut(s)	654
BcnI	CCSGG	1 cut(s)	864
BcoDI	GTCTC	2 cut(s)	90, 212
BcuI	ACTAGT	1 cut(s)	416
BfaI	CTAG	2 cut(s)	417, 423
BfmI	CTRYAG	1 cut(s)	711
BfoI	RGCGCY	2 cut(s)	464, 758
BglII	AGATCT	1 cut(s)	197
BisI	GCNGC	4 cut(s)	278, 602, 642, 840
BlsI	GCNGC	4 cut(s)	279, 603, 643, 841
Bme1390I	CCNGG	2 cut(s)	191, 864
BmiI	GGNNCC	4 cut(s)	462, 572, 786, 861
BmrFI	CCNGG	2 cut(s)	191, 864
BmrI	ACTGGG	1 cut(s)	621
BmsI	GCATC	3 cut(s)	264, 694, 736
BmuI	ACTGGG	1 cut(s)	621
Bpu10I	CCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	307
BpuMI	CCSGG	1 cut(s)	864
BsaHI	GRCGYC	1 cut(s)	461
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	762
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 560, 706
Bse118I	RCCGGY	2 cut(s)	699, 842
Bse1I	ACTGG	1 cut(s)	627
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	727
BseLI	CCNNNNNNNGG	3 cut(s)	190, 560, 706
BseMII	CTCAG	2 cut(s)	222, 387
BseNI	ACTGG	1 cut(s)	627
BseXI	GCAGC	4 cut(s)	289, 613, 653, 851
BshNI	GGYRCC	3 cut(s)	460, 784, 859
BsiSI	CCGG	4 cut(s)	700, 763, 843, 863
BslFI	GGGAC	1 cut(s)	662
BslI	CCNNNNNNNGG	3 cut(s)	190, 560, 706
BsmAI	GTCTC	2 cut(s)	90, 212
BsmFI	GGGAC	1 cut(s)	662
Bso31I	GGTCTC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	389
Bsp1407I	TGTACA	1 cut(s)	767
Bsp143I	GATC	5 cut(s)	84, 197, 425, 519, 654
BspACI	CCGC	1 cut(s)	776
BspCNI	CTCAG	2 cut(s)	221, 388
BspLI	GGNNCC	4 cut(s)	462, 572, 786, 861
BspPI	GGATC	2 cut(s)	92, 527
BspT107I	GGYRCC	3 cut(s)	460, 784, 859
BspTNI	GGTCTC	1 cut(s)	90
BsrFI	RCCGGY	2 cut(s)	699, 842
BsrGI	TGTACA	1 cut(s)	767
BsrI	ACTGG	1 cut(s)	627
BssAI	RCCGGY	2 cut(s)	699, 842
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	5 cut(s)	84, 197, 425, 519, 654
BssNI	GRCGYC	1 cut(s)	461
BssSI	CACGAG	1 cut(s)	449
Bst2BI	CACGAG	1 cut(s)	449
Bst2UI	CCWGG	1 cut(s)	191
BstACI	GRCGYC	1 cut(s)	461
BstAPI	GCANNNNNTGC	1 cut(s)	142
BstAUI	TGTACA	1 cut(s)	767
BstC8I	GCNNGC	6 cut(s)	249, 253, 301, 329, 789, 844
BstDEI	CTNAG	2 cut(s)	208, 396
BstF5I	GGATG	1 cut(s)	727
BstH2I	RGCGCY	2 cut(s)	464, 758
BstHHI	GCGC	2 cut(s)	463, 757
BstKTI	GATC	5 cut(s)	87, 200, 428, 522, 657
BstMAI	GTCTC	2 cut(s)	90, 212
BstMBI	GATC	5 cut(s)	84, 197, 425, 519, 654
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 305, 784
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	2 cut(s)	189, 862
BstSFI	CTRYAG	1 cut(s)	711
BstV1I	GCAGC	4 cut(s)	289, 613, 653, 851
BstX2I	RGATCY	2 cut(s)	197, 519
BstYI	RGATCY	2 cut(s)	197, 519
BtgZI	GCGATG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	727
BtsI	GCAGTG	1 cut(s)	499
BtsIMutI	CAGTG	2 cut(s)	499, 634
Cac8I	GCNNGC	6 cut(s)	249, 253, 301, 329, 789, 844
CaiI	CAGNNNCTG	1 cut(s)	802
CfoI	GCGC	2 cut(s)	463, 757
Cfr10I	RCCGGY	2 cut(s)	699, 842
Csp6I	GTAC	2 cut(s)	768, 860
CviAII	CATG	2 cut(s)	214, 488
CviQI	GTAC	2 cut(s)	768, 860
DdeI	CTNAG	2 cut(s)	208, 396
DinI	GGCGCC	1 cut(s)	462
DpnI	GATC	5 cut(s)	86, 199, 427, 521, 656
DpnII	GATC	5 cut(s)	84, 197, 425, 519, 654
EciI	GGCGGA	1 cut(s)	765
Eco24I	GRGCYC	1 cut(s)	389
Eco31I	GGTCTC	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	389
EgeI	GGCGCC	1 cut(s)	462
EheI	GGCGCC	1 cut(s)	462
FaeI	CATG	2 cut(s)	217, 491
FalI	AAGNNNNNCTT	2 cut(s)	39, 71
FaqI	GGGAC	1 cut(s)	662
FatI	CATG	2 cut(s)	213, 487
FauNDI	CATATG	1 cut(s)	75
FbaI	TGATCA	1 cut(s)	654
FblI	GTMKAC	1 cut(s)	664
Fnu4HI	GCNGC	4 cut(s)	278, 602, 642, 840
FokI	GGATG	1 cut(s)	714
FriOI	GRGCYC	1 cut(s)	389
Fsp4HI	GCNGC	4 cut(s)	278, 602, 642, 840
FspBI	CTAG	2 cut(s)	417, 423
GlaI	GCGC	2 cut(s)	462, 756
GluI	GCNGC	4 cut(s)	278, 602, 642, 840
HaeII	RGCGCY	2 cut(s)	464, 758
HapII	CCGG	4 cut(s)	700, 763, 843, 863
HhaI	GCGC	2 cut(s)	463, 757
Hin1I	GRCGYC	1 cut(s)	461
Hin1II	CATG	2 cut(s)	217, 491
Hin6I	GCGC	2 cut(s)	461, 755
HinP1I	GCGC	2 cut(s)	461, 755
HinfI	GANTC	1 cut(s)	620
HpaII	CCGG	4 cut(s)	700, 763, 843, 863
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	3 cut(s)	510, 665, 768
Hpy188I	TCNGA	3 cut(s)	151, 659, 834
Hpy188III	TCNNGA	2 cut(s)	617, 739
Hpy8I	GTNNAC	3 cut(s)	510, 665, 768
HpyAV	CCTTC	5 cut(s)	331, 476, 789, 850, 891
HpyCH4IV	ACGT	2 cut(s)	512, 591
HpyCH4V	TGCA	6 cut(s)	73, 255, 277, 288, 407, 641
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 305, 784
HpyF3I	CTNAG	2 cut(s)	208, 396
HpySE526I	ACGT	2 cut(s)	512, 591
Hsp92I	GRCGYC	1 cut(s)	461
Hsp92II	CATG	2 cut(s)	217, 491
HspAI	GCGC	2 cut(s)	461, 755
KasI	GGCGCC	1 cut(s)	460
KpnI	GGTACC	1 cut(s)	863
KroI	GCCGGC	1 cut(s)	842
KroNI	GCCGGC	1 cut(s)	844
Ksp22I	TGATCA	1 cut(s)	654
Kzo9I	GATC	5 cut(s)	84, 197, 425, 519, 654
LmnI	GCTCC	2 cut(s)	313, 563
Lsp1109I	GCAGC	4 cut(s)	289, 613, 653, 851
LweI	GCATC	3 cut(s)	264, 694, 736
MaeI	CTAG	2 cut(s)	417, 423
MaeII	ACGT	2 cut(s)	512, 591
MalI	GATC	5 cut(s)	86, 199, 427, 521, 656
MboI	GATC	5 cut(s)	84, 197, 425, 519, 654
MboII	GAAGA	2 cut(s)	140, 192
MflI	RGATCY	2 cut(s)	197, 519
MhlI	GDGCHC	1 cut(s)	389
MluCI	AATT	3 cut(s)	15, 748, 889
Mly113I	GGCGCC	1 cut(s)	461
MlyI	GAGTC	1 cut(s)	629
MmeI	TCCRAC	1 cut(s)	786
MnlI	CCTC	4 cut(s)	110, 117, 399, 653
MroNI	GCCGGC	1 cut(s)	842
MseI	TTAA	2 cut(s)	167, 588
MslI	CAYNNNNRTG	3 cut(s)	169, 298, 492
MspI	CCGG	4 cut(s)	700, 763, 843, 863
MspR9I	CCNGG	2 cut(s)	191, 864
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	3 cut(s)	142, 305, 784
NaeI	GCCGGC	1 cut(s)	844
NarI	GGCGCC	1 cut(s)	461
NciI	CCSGG	1 cut(s)	864
NdeI	CATATG	1 cut(s)	75
NdeII	GATC	5 cut(s)	84, 197, 425, 519, 654
NgoMIV	GCCGGC	1 cut(s)	842
NlaIII	CATG	2 cut(s)	217, 491
NlaIV	GGNNCC	4 cut(s)	462, 572, 786, 861
OliI	CACNNNNGTG	1 cut(s)	298
PdiI	GCCGGC	1 cut(s)	844
PkrI	GCNGC	4 cut(s)	279, 603, 643, 841
PleI	GAGTC	1 cut(s)	628
PluTI	GGCGCC	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	628
Psp1406I	AACGTT	1 cut(s)	591
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	4 cut(s)	462, 572, 786, 861
PstNI	CAGNNNCTG	1 cut(s)	802
PsuI	RGATCY	2 cut(s)	197, 519
RsaI	GTAC	2 cut(s)	769, 861
RsaNI	GTAC	2 cut(s)	768, 860
RseI	CAYNNNNRTG	3 cut(s)	169, 298, 492
SaqAI	TTAA	2 cut(s)	167, 588
SatI	GCNGC	4 cut(s)	278, 602, 642, 840
Sau3AI	GATC	5 cut(s)	84, 197, 425, 519, 654
SchI	GAGTC	1 cut(s)	629
ScrFI	CCNGG	2 cut(s)	191, 864
SduI	GDGCHC	1 cut(s)	389
SfaNI	GCATC	3 cut(s)	264, 694, 736
SfcI	CTRYAG	1 cut(s)	711
SfoI	GGCGCC	1 cut(s)	462
SmiMI	CAYNNNNRTG	3 cut(s)	169, 298, 492
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
SpeI	ACTAGT	1 cut(s)	416
Sse9I	AATT	3 cut(s)	15, 748, 889
SsiI	CCGC	1 cut(s)	776
SspDI	GGCGCC	1 cut(s)	460
SspMI	CTAG	2 cut(s)	417, 423
StyD4I	CCNGG	2 cut(s)	189, 862
TaiI	ACGT	2 cut(s)	515, 594
TaqI	TCGA	1 cut(s)	258
TasI	AATT	3 cut(s)	15, 748, 889
TatI	WGTACW	1 cut(s)	767
Tru1I	TTAA	2 cut(s)	167, 588
Tru9I	TTAA	2 cut(s)	167, 588
TscAI	CASTG	2 cut(s)	499, 634
TseI	GCWGC	4 cut(s)	277, 601, 641, 839
TspDTI	ATGAA	3 cut(s)	12, 153, 546
TspGWI	ACGGA	1 cut(s)	863
TspRI	CASTG	2 cut(s)	499, 634
XmiI	GTMKAC	1 cut(s)	664
XspI	CTAG	2 cut(s)	417, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.