AT3G27700

Zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011914
Physical Location & Seq
Reverse (-)
10256895 .. 10261975
5081 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27700.2

Sequence Viewer

Length: 2727 bp
ATGGAACTTTCTGTTTCCTCTCCAAAGCAAAGTGTGTTATCTCCACCTGATTGTATGAGTGACCCTGAGGAGGAGCATGAGATCAGTGAGGAGGAGGATGATGATCGCAACCATAAGCACCGTAGGAAAGAAGAGACCAGGTCTCAGTCTTTGGAACAAGATTCTTCAGATCAGGCTTTCTCACGGCCGTACAGGAAAAACTATAGACATTATGAAAATGGCAATTCGTTTAGTGAACATGAAAAGCGGTCTTTTGGGACTGGATCAGGGCAACGTGTACAGTTTGATAACCAAAGAATGAGGTCAAACCCAATGTTTTCAAGGGACTCTGGTCCTGGTAGAGGTAGAGGAAACTATGGTTCTTGGGCCCAGCGTGATTCCAGGTTTAATCCTGTTGATCTCTCATCTCATATGGTTCAAGTCGGGTCTATGGGCCAGGGTATGTTTGGAGGAAGGGGACTAGCTGGTGTTTCAGCTGCTCAAAGTGCACCATGGCCTCCTTTTGGAATGATTCCTGGAGTTCCTAATGGTGGCTTGGATGGTTTCCATCACTTACAAGGGTCCCTTAGACCGCCCTTAAATGCGCCACTTAACATGGGTATTCCTCGGCAACGATGCAGAGACTTTGAGGAACGTGGTTTCTGCCTCAGAGGGGACATGTGTCCAATGGAGCATGGAATGAATCGTATTGTTGTTGACGATGTTCAGAGTCTATCACAGTTTAACCTTCCCGTTTCAGTCCCTGGTGCACCTCATCTGGCAGCTTCTTCTAAACAAGTGCCCGCTCAGTTTGGGGGTGCCAGTTTCATGAATCCTAAAGGAGCTCATGGGAGGACTAACGAGGGGGGAATGGCTGTTGATGGTTTGGGTTATGGGGATGCATATCCTAGTGCTGGTGGAACTGACTTTTACGATCCTGATCAACCTTTGTGGAATAATAGTACTGGTGAAACTTCAGGTGCAATATCTACACTCAATTCTCATGGGGTTGATGAGAATGTGGCTCCACTGGATGACAGTAACCAAGACGCCGCTGAAAATGGGTGTGGTATTAGAGACTCTAGAAGCACAAGTCAATCAGTTTGGGGAAGAATGAAAGGTTCTAATAGTCAAGCAAATTCCAAAGAGAAAGCTGATGCAGTATTAAATTCATCAGCTGTTCCTGAAGATCAATTGAAGGAGGTCTCAGTTAATTCATCTCGACACGGTAAACAAAACCATGTTGGTGAAAGTGTCGCAAAAGTTGTTGATTCATCGAATATTTCAAATGATATGATGAACAATACAAGGAAACCAACTCAAAAGGCAATGCGGACTCTATTTGTGAATTATGTTCCACACGAGAGCAACAGAAGGGACCTCATTCTTGCCCATTTTCAGAAATTTGGGAAAGTTATTGACATTCACATCCCAGTAAATAGTGAGAGAGCATTTGTGCAGTTCTCAAAACGTGAAGAGGCTGAATCTGCCCTCAGGGCACCTGATGCTGTGATGGGTAACCGCTTCATCAAACTTTGGTGGGCAAATAGAGATAGTATACCTGATAATGGCCTGTCCACTGGCAGTGGTGCTTCTATGAAGGGTCGTAGTATGACTGCTTCTGGAGCACAGAACCAATTTCCTATTGCTGCTGCATCGAAAAGCAACCATGTATCTTCAATTGCTAAGGTCCCTACCTTCCAAACTGGTGGAGCTCCATCCTCCTCTGAACAGCCTAAGCCTGTGGTGGTGACCACCAGTGGTCCCAAGGTTACGCCGCTTCAGCAGAAAAAAGCAGACACTCTTGAGCGGTTGAAGGAGACTCTTCGTAAAAAACAGGAAATGCTGGAGCAGAAGCGTAACGAGTACCGCAAAAAATTGGCTACACTTGAAAAACAAGGTACTGTTGTCAAGAGGGAGGAAGCAGATGAGCCAGATGCTAAGCGTGTTAAACTAGACACAGCCTCTGATTCGGGAGCTGCAATTGCATCACCAAAAACAGAGTCATCGACAGATAAGAAAGTGCCTATCCTGAAACCACTTTCCACCGCCAAACTAAGCACAGAAACGCCATCACCCGATTCAAAAAACTTTAAGCAAAGACCATATTCGTTTACCACAAGTTTGAACGCTCCTATGGTAAATAGGTATAAGTTGGATAACCGCACCACGACCATCAAAGTGGTTCCTCCTTTGCCAACTGGGTTAGCTGATGTTGCTGTCGTAAAGGAACATTTTTCATCTTACGGCGAAGTCTCAAAAGTGGAACTGGAAGACAATGCATCGATTGATAGTGGCAAGGATCATGAAACACAGAACGAAAGCCGTGCAGCTTGTGTCACATTTGTGAAACGCAGCGCAGCAGAGAAAGCGTTTGCTAATGCAAAGTGTTGGCAAGAACACACGTTGCAGCTCGTGTGGGTAACACGTCAAAGCAACAGAGAGAGCAACAATAACAATAACAATAGTAATAGTCTCTCTGTTTCTCGTGACAACCTTAGCAGCAAAAACAAGTGCGCTTCTGTCTCTAATGACCCAAAACCAGCAGTTGAAGTCAAGACCTCCTCTACGGAAGAACCAGAGAATACAAATGTTTCTGGAGACAACGACAGTACTTTGGATAAACAAGAGACCAAAGAAAGCGACAATGATAACAATAAAAGTAACCACGAGTCCATCGAAGGAGCTTCTGAGGTGATTGCAACTGCAGGAACTGATGAAGAACAATCTGAACAAATTCATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

908

Amino Acids

99.23

Weight (kDa)

6.4

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 440 - 503 7.7e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27700 AT3G27700
fragaria_vesca FvH4_6g51350
malus_domestica MD09G1028400.v1.1 MD17G1029900.v1.1
prunus_persica Prupe.3G289600_v2.0.a1 Prupe.3G290100_v2.0.a1
pyrus_communis pycom111g02240 pycom17g02730
rosa_chinensis RchiOBHm_Chr2g0173051
rosa_laevigata RLG00000022152
rosa_multiflora Rmu_sc0011236.1_g000003
rosa_roxburghii Rroxscaffold_2G00079290
rosa_rugosa Rorug02G0564800
rosa_samantha Rh2AG644300 Rh2BG655100 Rh2CG620400 Rh2DG668600
rosa_wichuraiana Rw2G052940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 797, 1477
AccBSI CCGCTC 2 cut(s) 785, 1789
AccI GTMKAC 1 cut(s) 1537
AclWI GGATC 3 cut(s) 271, 908, 2289
AcoI YGGCCR 1 cut(s) 185
AcsI RAATTY 4 cut(s) 1117, 1147, 1382, 2715
AcuI CTGAAG 4 cut(s) 150, 939, 1185, 1745
AcyI GRCGYC 1 cut(s) 1029
AfaI GTAC 6 cut(s) 191, 279, 943, 1847, 1882, 2593
AfiI CCNNNNNNNGG 7 cut(s) 70, 341, 503, 530, 652, 893, 1547
AflIII ACRYGT 4 cut(s) 274, 657, 2382, 2405
AjiI CACGTC 1 cut(s) 2408
AjnI CCWGG 6 cut(s) 137, 334, 380, 435, 514, 742
AleI CACNNNNGTG 1 cut(s) 2324
Alw21I GWGCWC 5 cut(s) 490, 751, 826, 1609, 1696
Alw44I GTGCAC 2 cut(s) 486, 747
AlwI GGATC 3 cut(s) 271, 908, 2289
AlwNI CAGNNNCTG 3 cut(s) 743, 1946, 2693
AoxI GGCC 5 cut(s) 185, 366, 433, 494, 1549
ApaI GGGCCC 1 cut(s) 370
ApaLI GTGCAC 2 cut(s) 486, 747
ApoI RAATTY 4 cut(s) 1117, 1147, 1382, 2715
ArsI GACNNNNNNTTYG 2 cut(s) 1967, 1999
Asp700I GAANNNNTTC 1 cut(s) 2715
AspLEI GCGC 3 cut(s) 586, 2339, 2498
AspS9I GGNCC 8 cut(s) 332, 366, 367, 433, 561, 1357, 1669, 1742
AsuHPI GGTGA 6 cut(s) 959, 1238, 1741, 1962, 2046, 2686
AvaII GGWCC 5 cut(s) 332, 561, 1357, 1669, 1742
AxyI CCTNAGG 2 cut(s) 66, 1472
BaeGI GKGCMC 5 cut(s) 370, 490, 751, 783, 1480
BaeI ACNNNNGTAYC 2 cut(s) 1872, 1905
BanI GGYRCC 2 cut(s) 797, 1477
BanII GRGCYC 3 cut(s) 370, 826, 1696
BarI GAAGNNNNNNTAC 2 cut(s) 1582, 1614
BauI CACGAG 4 cut(s) 1340, 2393, 2466, 2648
BbsI GAAGAC 1 cut(s) 2259
Bbv12I GWGCWC 5 cut(s) 490, 751, 826, 1609, 1696
BccI CCATC 8 cut(s) 533, 555, 854, 1486, 1705, 2059, 2162, 2663
BceAI ACGGC 4 cut(s) 172, 200, 2242, 2289
BcgI CGANNNNNNTGC 2 cut(s) 2288, 2322
BciT130I CCWGG 6 cut(s) 139, 336, 382, 437, 516, 744
BclI TGATCA 1 cut(s) 919
BfaI CTAG 4 cut(s) 461, 888, 1062, 1934
BfmI CTRYAG 2 cut(s) 202, 2685
BglI GCCNNNNNGGC 1 cut(s) 1475
BlpI GCTNAGC 1 cut(s) 1920
BmcAI AGTACT 2 cut(s) 943, 2593
Bme1390I CCNGG 6 cut(s) 139, 336, 382, 437, 516, 744
Bme18I GGWCC 5 cut(s) 332, 561, 1357, 1669, 1742
BmgBI CACGTC 1 cut(s) 2408
BmgT120I GGNCC 8 cut(s) 332, 366, 367, 433, 561, 1357, 1669, 1742
BmrFI CCNGG 6 cut(s) 139, 336, 382, 437, 516, 744
BmrI ACTGGG 2 cut(s) 1406, 2190
BmsI GCATC 8 cut(s) 605, 868, 1126, 1474, 1643, 1906, 1976, 2270
BmuI ACTGGG 2 cut(s) 1406, 2190
BoxI GACNNNNGTC 2 cut(s) 330, 660
BpiI GAAGAC 1 cut(s) 2259
BpmI CTGGAG 4 cut(s) 537, 1623, 1847, 2598
Bpu10I CCTNAGC 3 cut(s) 1665, 1716, 2477
Bpu1102I GCTNAGC 1 cut(s) 1920
BpuEI CTTGAG 1 cut(s) 1805
Bsa29I ATCGAT 1 cut(s) 2264
BsaBI GATNNNNATC 3 cut(s) 102, 882, 918
BsaHI GRCGYC 1 cut(s) 1029
BsaI GGTCTC 4 cut(s) 128, 147, 1189, 2603
BsaJI CCNNGG 5 cut(s) 436, 491, 605, 742, 1746
Bsc4I CCNNNNNNNGG 7 cut(s) 70, 341, 503, 530, 652, 893, 1547
Bse21I CCTNAGG 2 cut(s) 66, 1472
Bse3DI GCAATG 1 cut(s) 1314
Bse8I GATNNNNATC 3 cut(s) 102, 882, 918
BseBI CCWGG 6 cut(s) 139, 336, 382, 437, 516, 744
BseCI ATCGAT 1 cut(s) 2264
BseDI CCNNGG 5 cut(s) 436, 491, 605, 742, 1746
BseGI GGATG 6 cut(s) 103, 544, 883, 1018, 1407, 1697
BseJI GATNNNNATC 3 cut(s) 102, 882, 918
BseLI CCNNNNNNNGG 7 cut(s) 70, 341, 503, 530, 652, 893, 1547
BseMI GCAATG 1 cut(s) 1314
BseMII CTCAG 7 cut(s) 57, 158, 661, 800, 1200, 1486, 2661
BseRI GAGGAG 6 cut(s) 83, 86, 104, 107, 1693, 2533
BseSI GKGCMC 5 cut(s) 370, 490, 751, 783, 1480
BseX3I CGGCCG 1 cut(s) 185
BseYI CCCAGC 1 cut(s) 369
BsgI GTGCAG 2 cut(s) 1457, 2328
Bsh1285I CGRYCG 1 cut(s) 188
BshFI GGCC 5 cut(s) 187, 368, 435, 496, 1551
BshNI GGYRCC 2 cut(s) 797, 1477
BshVI ATCGAT 1 cut(s) 2264
BsiEI CGRYCG 1 cut(s) 188
BsiHKAI GWGCWC 5 cut(s) 490, 751, 826, 1609, 1696
BslFI GGGAC 9 cut(s) 271, 338, 471, 547, 668, 725, 1370, 1655, 1728
BslI CCNNNNNNNGG 7 cut(s) 70, 341, 503, 530, 652, 893, 1547
BsmFI GGGAC 9 cut(s) 271, 338, 471, 547, 668, 725, 1370, 1655, 1728
BsnI GGCC 5 cut(s) 187, 368, 435, 496, 1551
Bso31I GGTCTC 4 cut(s) 128, 147, 1189, 2603
Bsp120I GGGCCC 1 cut(s) 366
Bsp1286I GDGCHC 8 cut(s) 370, 490, 751, 783, 826, 1480, 1609, 1696
Bsp1407I TGTACA 1 cut(s) 277
Bsp143I GATC 9 cut(s) 81, 103, 169, 263, 397, 913, 919, 1168, 2281
Bsp1720I GCTNAGC 1 cut(s) 1920
Bsp19I CCATGG 1 cut(s) 491
BspANI GGCC 5 cut(s) 187, 368, 435, 496, 1551
BspCNI CTCAG 7 cut(s) 58, 157, 660, 799, 1199, 1485, 2662
BspDI ATCGAT 1 cut(s) 2264
BspHI TCATGA 2 cut(s) 807, 2284
BspMAI CTGCAG 1 cut(s) 2689
BspPI GGATC 3 cut(s) 271, 908, 2289
BspT107I GGYRCC 2 cut(s) 797, 1477
BspTNI GGTCTC 4 cut(s) 128, 147, 1189, 2603
BsrBI CCGCTC 2 cut(s) 785, 1789
BsrDI GCAATG 1 cut(s) 1314
BsrGI TGTACA 1 cut(s) 277
BssECI CCNNGG 5 cut(s) 436, 491, 605, 742, 1746
BssMI GATC 9 cut(s) 81, 103, 169, 263, 397, 913, 919, 1168, 2281
BssNAI GTATAC 1 cut(s) 1538
BssNI GRCGYC 1 cut(s) 1029
BssSI CACGAG 4 cut(s) 1340, 2393, 2466, 2648
BssT1I CCWWGG 2 cut(s) 491, 1746
Bst1107I GTATAC 1 cut(s) 1538
Bst2BI CACGAG 4 cut(s) 1340, 2393, 2466, 2648
Bst2UI CCWGG 6 cut(s) 139, 336, 382, 437, 516, 744
Bst4CI ACNGT 7 cut(s) 122, 282, 720, 1019, 1208, 1885, 2591
Bst6I CTCTTC 3 cut(s) 126, 1449, 1809
BstACI GRCGYC 1 cut(s) 1029
BstAPI GCANNNNNTGC 1 cut(s) 1484
BstAUI TGTACA 1 cut(s) 277
BstC8I GCNNGC 1 cut(s) 783
BstDSI CCRYGG 1 cut(s) 491
BstEII GGTNACC 2 cut(s) 1496, 1729
BstENI CCTNNNNNAGG 1 cut(s) 339
BstF5I GGATG 6 cut(s) 103, 544, 883, 1018, 1407, 1697
BstHHI GCGC 3 cut(s) 586, 2339, 2498
BstKTI GATC 9 cut(s) 84, 106, 172, 266, 400, 916, 922, 1171, 2284
BstMBI GATC 9 cut(s) 81, 103, 169, 263, 397, 913, 919, 1168, 2281
BstMCI CGRYCG 1 cut(s) 188
BstMWI GCNNNNNNNGC 9 cut(s) 485, 1466, 1475, 1484, 1604, 1762, 1964, 2195, 2348
BstNI CCWGG 6 cut(s) 139, 336, 382, 437, 516, 744
BstNSI RCATGY 1 cut(s) 661
BstPAI GACNNNNGTC 2 cut(s) 330, 660
BstPI GGTNACC 2 cut(s) 1496, 1729
BstSCI CCNGG 6 cut(s) 137, 334, 380, 435, 514, 742
BstSFI CTRYAG 2 cut(s) 202, 2685
BstSLI GKGCMC 5 cut(s) 370, 490, 751, 783, 1480
BstV2I GAAGAC 1 cut(s) 2259
BstXI CCANNNNNNTGG 2 cut(s) 1688, 2161
BstZ17I GTATAC 1 cut(s) 1538
BstZI CGGCCG 1 cut(s) 185
Bsu15I ATCGAT 1 cut(s) 2264
Bsu36I CCTNAGG 2 cut(s) 66, 1472
BsuRI GGCC 5 cut(s) 187, 368, 435, 496, 1551
BsuTUI ATCGAT 1 cut(s) 2264
BtgI CCRYGG 1 cut(s) 491
BtrI CACGTC 1 cut(s) 2408
BtsCI GGATG 6 cut(s) 103, 544, 883, 1018, 1407, 1697
BtsI GCAGTG 1 cut(s) 1570
BtsIMutI CAGTG 5 cut(s) 91, 1007, 1557, 1570, 1744
Cac8I GCNNGC 1 cut(s) 783
CaiI CAGNNNCTG 3 cut(s) 743, 1946, 2693
CciI TCATGA 2 cut(s) 807, 2284
CfoI GCGC 3 cut(s) 586, 2339, 2498
Cfr13I GGNCC 8 cut(s) 332, 366, 367, 433, 561, 1357, 1669, 1742
ClaI ATCGAT 1 cut(s) 2264
CseI GACGC 1 cut(s) 1037
CsiI ACCWGGT 1 cut(s) 137
Csp6I GTAC 6 cut(s) 190, 278, 942, 1846, 1881, 2592
CspCI CAANNNNNGTGG 2 cut(s) 911, 946
CviQI GTAC 6 cut(s) 190, 278, 942, 1846, 1881, 2592
DpnI GATC 9 cut(s) 83, 105, 171, 265, 399, 915, 921, 1170, 2283
DpnII GATC 9 cut(s) 81, 103, 169, 263, 397, 913, 919, 1168, 2281
EaeI YGGCCR 1 cut(s) 185
EagI CGGCCG 1 cut(s) 185
Eam1104I CTCTTC 3 cut(s) 126, 1449, 1809
EarI CTCTTC 3 cut(s) 126, 1449, 1809
Ecl136II GAGCTC 2 cut(s) 824, 1694
EclXI CGGCCG 1 cut(s) 185
Eco130I CCWWGG 2 cut(s) 491, 1746
Eco24I GRGCYC 3 cut(s) 370, 826, 1696
Eco31I GGTCTC 4 cut(s) 128, 147, 1189, 2603
Eco47I GGWCC 5 cut(s) 332, 561, 1357, 1669, 1742
Eco52I CGGCCG 1 cut(s) 185
Eco53kI GAGCTC 2 cut(s) 824, 1694
Eco57I CTGAAG 4 cut(s) 150, 939, 1185, 1745
Eco81I CCTNAGG 2 cut(s) 66, 1472
Eco91I GGTNACC 2 cut(s) 1496, 1729
EcoICRI GAGCTC 2 cut(s) 824, 1694
EcoNI CCTNNNNNAGG 1 cut(s) 339
EcoO109I RGGNCCY 3 cut(s) 561, 1357, 1669
EcoO65I GGTNACC 2 cut(s) 1496, 1729
EcoRII CCWGG 6 cut(s) 137, 334, 380, 435, 514, 742
EcoT14I CCWWGG 2 cut(s) 491, 1746
EcoT22I ATGCAT 2 cut(s) 883, 2263
EcoT38I GRGCYC 3 cut(s) 370, 826, 1696
ErhI CCWWGG 2 cut(s) 491, 1746
FalI AAGNNNNNCTT 2 cut(s) 549, 581
FaqI GGGAC 9 cut(s) 271, 338, 471, 547, 668, 725, 1370, 1655, 1728
FauI CCCGC 1 cut(s) 790
FauNDI CATATG 1 cut(s) 411
FbaI TGATCA 1 cut(s) 919
FblI GTMKAC 1 cut(s) 1537
FokI GGATG 6 cut(s) 110, 551, 890, 1025, 1394, 1684
FriOI GRGCYC 3 cut(s) 370, 826, 1696
FspBI CTAG 4 cut(s) 461, 888, 1062, 1934
GlaI GCGC 3 cut(s) 585, 2338, 2497
GsaI CCCAGC 1 cut(s) 373
GsuI CTGGAG 4 cut(s) 537, 1623, 1847, 2598
HaeIII GGCC 5 cut(s) 187, 368, 435, 496, 1551
HgaI GACGC 1 cut(s) 1037
HhaI GCGC 3 cut(s) 586, 2339, 2498
Hin1I GRCGYC 1 cut(s) 1029
Hin6I GCGC 3 cut(s) 584, 2337, 2496
HinP1I GCGC 3 cut(s) 584, 2337, 2496
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HphI GGTGA 6 cut(s) 959, 1238, 1741, 1962, 2046, 2686
Hpy166II GTNNAC 9 cut(s) 236, 278, 488, 697, 749, 1211, 1538, 1557, 2094
Hpy188I TCNGA 8 cut(s) 169, 650, 708, 1380, 1708, 1948, 2671, 2710
Hpy8I GTNNAC 9 cut(s) 236, 278, 488, 697, 749, 1211, 1538, 1557, 2094
HpyAV CCTTC 8 cut(s) 447, 737, 1171, 1347, 1573, 1687, 1789, 2654
HpyCH4III ACNGT 7 cut(s) 122, 282, 720, 1019, 1208, 1885, 2591
HpyCH4IV ACGT 5 cut(s) 274, 634, 1450, 2384, 2407
HpyF10VI GCNNNNNNNGC 9 cut(s) 485, 1466, 1475, 1484, 1604, 1762, 1964, 2195, 2348
HpySE526I ACGT 5 cut(s) 274, 634, 1450, 2384, 2407
Hsp92I GRCGYC 1 cut(s) 1029
HspAI GCGC 3 cut(s) 584, 2337, 2496
KflI GGGWCCC 1 cut(s) 561
Ksp22I TGATCA 1 cut(s) 919
Kzo9I GATC 9 cut(s) 81, 103, 169, 263, 397, 913, 919, 1168, 2281
LweI GCATC 8 cut(s) 605, 868, 1126, 1474, 1643, 1906, 1976, 2270
MabI ACCWGGT 1 cut(s) 137
MaeI CTAG 4 cut(s) 461, 888, 1062, 1934
MaeII ACGT 5 cut(s) 274, 634, 1450, 2384, 2407
MalI GATC 9 cut(s) 83, 105, 171, 265, 399, 915, 921, 1170, 2283
MbiI CCGCTC 2 cut(s) 785, 1789
MboI GATC 9 cut(s) 81, 103, 169, 263, 397, 913, 919, 1168, 2281
MfeI CAATTG 3 cut(s) 1172, 1659, 1962
MhlI GDGCHC 8 cut(s) 370, 490, 751, 783, 826, 1480, 1609, 1696
MlyI GAGTC 7 cut(s) 320, 718, 1052, 1309, 1795, 1991, 2660
MmeI TCCRAC 1 cut(s) 2115
Mph1103I ATGCAT 2 cut(s) 883, 2263
MroXI GAANNNNTTC 1 cut(s) 2715
MseI TTAA 8 cut(s) 387, 578, 591, 723, 1145, 1191, 1929, 2073
MslI CAYNNNNRTG 3 cut(s) 1224, 2159, 2324
MspA1I CMGCKG 3 cut(s) 476, 1034, 1157
MspR9I CCNGG 6 cut(s) 139, 336, 382, 437, 516, 744
MunI CAATTG 3 cut(s) 1172, 1659, 1962
MvaI CCWGG 6 cut(s) 139, 336, 382, 437, 516, 744
MwoI GCNNNNNNNGC 9 cut(s) 485, 1466, 1475, 1484, 1604, 1762, 1964, 2195, 2348
NcoI CCATGG 1 cut(s) 491
NdeI CATATG 1 cut(s) 411
NdeII GATC 9 cut(s) 81, 103, 169, 263, 397, 913, 919, 1168, 2281
NmeAIII GCCGAG 1 cut(s) 586
NmuCI GTSAC 4 cut(s) 59, 1729, 2317, 2468
NsiI ATGCAT 2 cut(s) 883, 2263
NspI RCATGY 1 cut(s) 661
OliI CACNNNNGTG 1 cut(s) 2324
PagI TCATGA 2 cut(s) 807, 2284
PciI ACATGT 1 cut(s) 657
PcsI WCGNNNNNNNCGW 1 cut(s) 2655
PdmI GAANNNNTTC 1 cut(s) 2715
PfeI GAWTC 9 cut(s) 161, 377, 511, 682, 811, 1250, 1463, 1949, 2060
PflFI GACNNNGTC 1 cut(s) 139
PfoI TCCNGGA 1 cut(s) 514
PleI GAGTC 7 cut(s) 320, 717, 1052, 1309, 1795, 1990, 2659
PpsI GAGTC 7 cut(s) 320, 717, 1052, 1309, 1795, 1990, 2659
PpuMI RGGWCCY 3 cut(s) 561, 1357, 1669
PscI ACATGT 1 cut(s) 657
PshAI GACNNNNGTC 2 cut(s) 330, 660
Psp124BI GAGCTC 2 cut(s) 826, 1696
Psp5II RGGWCCY 3 cut(s) 561, 1357, 1669
Psp6I CCWGG 6 cut(s) 137, 334, 380, 435, 514, 742
PspEI GGTNACC 2 cut(s) 1496, 1729
PspFI CCCAGC 1 cut(s) 369
PspGI CCWGG 6 cut(s) 137, 334, 380, 435, 514, 742
PspOMI GGGCCC 1 cut(s) 366
PspPI GGNCC 8 cut(s) 332, 366, 367, 433, 561, 1357, 1669, 1742
PspPPI RGGWCCY 3 cut(s) 561, 1357, 1669
PstI CTGCAG 1 cut(s) 2689
PstNI CAGNNNCTG 3 cut(s) 743, 1946, 2693
PsyI GACNNNGTC 1 cut(s) 139
PvuII CAGCTG 2 cut(s) 476, 1157
RsaI GTAC 6 cut(s) 191, 279, 943, 1847, 1882, 2593
RsaNI GTAC 6 cut(s) 190, 278, 942, 1846, 1881, 2592
RseI CAYNNNNRTG 3 cut(s) 1224, 2159, 2324
SacI GAGCTC 2 cut(s) 826, 1696
SaqAI TTAA 8 cut(s) 387, 578, 591, 723, 1145, 1191, 1929, 2073
Sau3AI GATC 9 cut(s) 81, 103, 169, 263, 397, 913, 919, 1168, 2281
Sau96I GGNCC 8 cut(s) 332, 366, 367, 433, 561, 1357, 1669, 1742
ScaI AGTACT 2 cut(s) 943, 2593
SchI GAGTC 7 cut(s) 320, 718, 1052, 1309, 1795, 1991, 2660
ScrFI CCNGG 6 cut(s) 139, 336, 382, 437, 516, 744
SduI GDGCHC 8 cut(s) 370, 490, 751, 783, 826, 1480, 1609, 1696
SexAI ACCWGGT 1 cut(s) 137
SfaNI GCATC 8 cut(s) 605, 868, 1126, 1474, 1643, 1906, 1976, 2270
SfcI CTRYAG 2 cut(s) 202, 2685
SinI GGWCC 5 cut(s) 332, 561, 1357, 1669, 1742
SmiMI CAYNNNNRTG 3 cut(s) 1224, 2159, 2324
SmlI CTYRAG 1 cut(s) 1784
SmoI CTYRAG 1 cut(s) 1784
SspI AATATT 1 cut(s) 1261
SspMI CTAG 4 cut(s) 461, 888, 1062, 1934
SstI GAGCTC 2 cut(s) 826, 1696
StyD4I CCNGG 6 cut(s) 137, 334, 380, 435, 514, 742
StyI CCWWGG 2 cut(s) 491, 1746
TaaI ACNGT 7 cut(s) 122, 282, 720, 1019, 1208, 1885, 2591
TaiI ACGT 5 cut(s) 277, 637, 1453, 2387, 2410
TaqI TCGA 6 cut(s) 1201, 1256, 1637, 1988, 2264, 2658
TatI WGTACW 3 cut(s) 277, 941, 2591
TauI GCSGC 2 cut(s) 1034, 1759
TfiI GAWTC 9 cut(s) 161, 377, 511, 682, 811, 1250, 1463, 1949, 2060
Tru1I TTAA 8 cut(s) 387, 578, 591, 723, 1145, 1191, 1929, 2073
Tru9I TTAA 8 cut(s) 387, 578, 591, 723, 1145, 1191, 1929, 2073
TscAI CASTG 5 cut(s) 91, 1014, 1564, 1570, 1744
TseFI GTSAC 4 cut(s) 59, 1729, 2317, 2468
Tsp45I GTSAC 4 cut(s) 59, 1729, 2317, 2468
TspGWI ACGGA 1 cut(s) 2564
TspRI CASTG 5 cut(s) 91, 1014, 1564, 1570, 1744
Tth111I GACNNNGTC 1 cut(s) 139
VneI GTGCAC 2 cut(s) 486, 747
VpaK11BI GGWCC 5 cut(s) 332, 561, 1357, 1669, 1742
XagI CCTNNNNNAGG 1 cut(s) 339
XapI RAATTY 4 cut(s) 1117, 1147, 1382, 2715
XbaI TCTAGA 1 cut(s) 1061
XceI RCATGY 1 cut(s) 661
XcmI CCANNNNNNNNNTGG 1 cut(s) 443
XmiI GTMKAC 1 cut(s) 1537
XmnI GAANNNNTTC 1 cut(s) 2715
XspI CTAG 4 cut(s) 461, 888, 1062, 1934
ZrmI AGTACT 2 cut(s) 943, 2593
Zsp2I ATGCAT 2 cut(s) 883, 2263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.