FvH4_6g51350

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011914
Physical Location & Seq
Forward (+)
38074086 .. 38080242
6157 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51350.t1

Sequence Viewer

Length: 2790 bp
ATGGAATTAAATGTTTCGTCTCCAAAACCAGGTGGCCTTTCTGCTTCTGATTTTGTTAGTGATCCTGAGGAGAAGGAAGTCAGTGATGATGACGATGATGATCGAAATCACAAACATCGTAGACGAGATGCTCGTTCTCAGTCTTTGGAGAGAGATACCCTTGATCAAGATATAACAAGGCCATACAGAAAAAGGAACAAACCTTTTGTAAATGGGCACTCTTTCAGAGATAATGATTCTCAAGCGAGTACACCATCAAAGTATTATAATTCCACTTCGTTTGAGAACTTTTCTGGAAAGTTTGATAAAAGACGCCCAGGTTCAGCATCACTGCCTCGAGCACCTTTCGATTTAAATCAAAGGATGCGGGCAAACCAAGCATTCCCTGGAGACCTTGGTCCTGGTAGGGGAAGAGGACGGGACTCTGCATCATGGAGCCAACGTGATTCTAGGTTCAGCTCTGATATTACATCTCAGCTGGTTCAGCAGGGATCCCTTCCTCCGAGTATGTTTGGAGGACGGGGATTGCCAAATGTTTCCAATCCACAGAATGCGTCCTGGAATGCATTTGGATTACTTCCAGGAGTACCAAACGGTGGCCTGGATACACTGCATTCAATTGGGTTGCAAGGTACACTCAGACCACCAATCCGTTCTTCTTTAAATTTGGGCATCCCTCGCCAAAGATGTAGAGACTTTGAGGAGCGTGGGTTTTGTCTAAGAGGGGACATGTGTCCAATGGAACATGGAGTCAATCGGATTGTTGTTGAAGATGTGCAGAGTCTTTCCCAGTTCAATCTTCCTGTTTCACTTCCAAGCGCACACCTACTTGGAAAACCCACTGGTCCTGGACCTCTACCATCAGTCAGTGCATCTTCAACTACATTGATGAATAACAAAGGATTGCATAGCAAAGCGAGCAAGTCTAGTGTCACTGATGATACTTCTTTGGGTGGAACTGACTTGTATGACCCTGATCAACCCCTGTGGAACAATAATGGTCCTGAAACCTCAAATGCAATTCTAGGCCTTCAGTCACCTAGGAATGATGAAACTGACTCCTTATCAAATGATGATCCTTCTGACCGTCATCAAGCTAGATTGTGTGATAACGCAGACAATGAATACCCAATTAGAACTGTTGGTACTGCTGCGGGTTCACAGAGTACAAGTGTGTCAGTCTGGGGCAGAATTGGTAGCTCAAAAAACAGACCAGACGTGAAGGAGAAAATTGACCCTACAATAAACTATTCAGATAATCCTGAGAATGTAACCGAGTCACAAATCAACATTCATCAGCAACATCAAGGAAAGCGTAGCATTGCAGAGGATACAAACTCCAAAACCCTAAACTCGTTAGCCAAGAGACCGTATGATACTATGCGTACTGTTCGGAAACCATCTCAGAAAGCATTACGTACTCTATTTGTCAACGGTATTCCTCAGAAAAGCAACAGAAGGGAGGCTCTTGTTTCTCATTTTCAAAAATTTGGAGAGATTTTGGACATTCATATTCCATCAAATAGTGAGCGAGCTTTTGTCCAGTTTTCCAAGAGAGAAGAGGCTGAAGCTGCTTTAAAGGCACCTGATGCTGTAATGGGTAATCGTTTTATCAAGTTGTGGTGGGCAAATCGTGATAGCATTCCAGAGGATGGCCCTGGCAAGGCTAGTATGGTTTCTGAAAGTTCCCCTGGTTTGACAGCTGTTTCAGTTCCACTCCATTCATCTGGTTCTAGTTTTAGCAAGGATAATCAACAATCTTCTTCAAAGGGTAGTATTGTTCATGCATCTGATGCTTCTGTACCATCCTTTGATAACTCTAAGCCTGTAATCTCAAATGGTCCCAAGGCTCCACCTCTGCAGAAAAAGCTAGAAAATTTAGAGCAGTTAAAGGAGGAACTTCGCAAGAAGCAGGAAATGCTGGACCAGAAACGGAATGACTTTCGTCGCCAGTTGTACAAGCTTGAGAAACAAGGCGGACCAAAGGGTGAGGCAGACACAGAGCTAGCTGCCAAGAGACGCAAAGTGGGATTAGCAGCTGACGCTGATAAAGTTGCTACTCCGAGTTCCTCCAGTCCTACTCCTACTCCTGTGTCAGCACTGGCTGATGAGATGTTGACTGACAAGAACCAATCCGGGGATACCGTCGTCTCCCATAGTCCTAAAGCAAGTACAGCTATGACTCTACAGCAATCTCCTACCTTGAAGCATCAGATGATTCGTCCATCAGTACCACTAGGGACTCCTGTTCCACTGAATAGATACAAATTAGACAATCGTCCTACTGGATTTAGAATTCTCCCTCCTTTACCATCTGGATTTGCAAATGTTACTGTTATCAAGGAACACTTTGTACCATGTGGTGATATTTCTAATGTGGAATTAGAAGATCTGGAATCTCGTGATAGTAGTAGTGAGTTGGACATATCAAAGAAATGCTCAGCTCGTATAACTTTTGCAACACGGCGTTCAGCAGAGAAAGCATTTCTCAATGGTAAATGCTGGGAAGGGTGTGACTTAAAATTTGTGTGGTTGACATCTAGTAACTCCAGCAATGGTGGTGAAAAATCTCCATCCACCACTCCTAGGGCGGCATTATCTGCTGATATTCAGCCTGCAGATAAACTAGCAAGCACTACTTCCCAGGATACATCTGCATCAGGCGATGCAGAATCTGAACAGTCTGAAAGAAAAGATGGTGATGAGCACATGAAACTGGGTGAACCTTCCATGCCTAGTTCAAGCCCTACGTCTTGGGTGAAAGAGTCATCGAAAGGCGATGCAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

930

Amino Acids

101.36

Weight (kDa)

8.21

Isoelectric Point (pI)

52.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 475 - 538 1.8e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27700 AT3G27700
fragaria_vesca FvH4_6g51350
malus_domestica MD09G1028400.v1.1 MD17G1029900.v1.1
prunus_persica Prupe.3G289600_v2.0.a1 Prupe.3G290100_v2.0.a1
pyrus_communis pycom111g02240 pycom17g02730
rosa_chinensis RchiOBHm_Chr2g0173051
rosa_laevigata RLG00000022152
rosa_multiflora Rmu_sc0011236.1_g000003
rosa_roxburghii Rroxscaffold_2G00079290
rosa_rugosa Rorug02G0564800
rosa_samantha Rh2AG644300 Rh2BG655100 Rh2CG620400 Rh2DG668600
rosa_wichuraiana Rw2G052940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 267
AccB1I GGYRCC 1 cut(s) 1582
AccB7I CCANNNNNTGG 2 cut(s) 596, 1652
AccI GTMKAC 1 cut(s) 121
AciI CCGC 4 cut(s) 367, 1154, 1977, 2591
AclWI GGATC 4 cut(s) 56, 486, 499, 1070
AcsI RAATTY 5 cut(s) 664, 1487, 1876, 2295, 2522
AcuI CTGAAG 2 cut(s) 1016, 1587
AcyI GRCGYC 1 cut(s) 313
AfiI CCNNNNNNNGG 7 cut(s) 29, 407, 596, 1652, 1663, 2137, 2586
AflIII ACRYGT 1 cut(s) 729
AgsI TTSAA 8 cut(s) 618, 770, 796, 879, 1484, 1767, 2206, 2742
AjiI CACGTC 1 cut(s) 1219
AjuI GAANNNNNNNTTGG 2 cut(s) 640, 672
Alw21I GWGCWC 2 cut(s) 343, 2709
Alw26I GTCTC 6 cut(s) 24, 384, 687, 1360, 2011, 2155
AlwI GGATC 4 cut(s) 56, 486, 499, 1070
AlwNI CAGNNNCTG 1 cut(s) 2675
Ama87I CYCGRG 1 cut(s) 336
AoxI GGCC 5 cut(s) 34, 179, 598, 1027, 1654
ApeKI GCWGC 4 cut(s) 1151, 1571, 2009, 2036
ApoI RAATTY 5 cut(s) 664, 1487, 1876, 2295, 2522
ArsI GACNNNNNNTTYG 2 cut(s) 2507, 2539
AspA2I CCTAGG 2 cut(s) 1040, 2585
AspLEI GCGC 1 cut(s) 821
AspS9I GGNCC 8 cut(s) 398, 845, 851, 1001, 1655, 1841, 1924, 1979
AsuC2I CCSGG 1 cut(s) 2137
AsuHPI GGTGA 7 cut(s) 1029, 2000, 2375, 2573, 2711, 2732, 2770
AsuNHI GCTAGC 1 cut(s) 2005
AvaI CYCGRG 1 cut(s) 336
AvaII GGWCC 7 cut(s) 398, 845, 851, 1001, 1841, 1924, 1979
AvrII CCTAGG 2 cut(s) 1040, 2585
AxyI CCTNAGG 1 cut(s) 66
BaeGI GKGCMC 1 cut(s) 219
BaeI ACNNNNGTAYC 2 cut(s) 2133, 2166
BamHI GGATCC 1 cut(s) 491
BanI GGYRCC 1 cut(s) 1582
BauI CACGAG 1 cut(s) 2400
Bbv12I GWGCWC 2 cut(s) 343, 2709
BbvI GCAGC 4 cut(s) 1138, 1558, 1996, 2048
BceAI ACGGC 1 cut(s) 2480
BciVI GTATCC 4 cut(s) 598, 1324, 2134, 2641
BclI TGATCA 2 cut(s) 163, 976
BcnI CCSGG 1 cut(s) 2137
BcoDI GTCTC 6 cut(s) 24, 384, 687, 1360, 2011, 2155
BfmI CTRYAG 3 cut(s) 1859, 2186, 2616
BfuI GTATCC 4 cut(s) 598, 1324, 2134, 2641
BglII AGATCT 1 cut(s) 2389
BisI GCNGC 5 cut(s) 1152, 1572, 2010, 2037, 2592
BlnI CCTAGG 2 cut(s) 1040, 2585
BlpI GCTNAGC 1 cut(s) 2440
BlsI GCNGC 5 cut(s) 1153, 1573, 2011, 2038, 2593
Bme18I GGWCC 7 cut(s) 398, 845, 851, 1001, 1841, 1924, 1979
BmeT110I CYCGRG 1 cut(s) 336
BmgBI CACGTC 1 cut(s) 1219
BmgT120I GGNCC 8 cut(s) 398, 845, 851, 1001, 1655, 1841, 1924, 1979
BmiI GGNNCC 5 cut(s) 437, 493, 1584, 1843, 1851
BmrI ACTGGG 2 cut(s) 784, 2726
BmtI GCTAGC 1 cut(s) 2009
BmuI ACTGGG 2 cut(s) 784, 2726
BoxI GACNNNNGTC 4 cut(s) 396, 732, 1944, 2277
BpmI CTGGAG 3 cut(s) 408, 2056, 2533
Bpu1102I GCTNAGC 1 cut(s) 2440
BpuEI CTTGAG 2 cut(s) 225, 1985
BpuMI CCSGG 1 cut(s) 2137
BsaAI YACGTR 1 cut(s) 1418
BsaBI GATNNNNATC 3 cut(s) 99, 105, 354
BsaHI GRCGYC 1 cut(s) 313
BsaI GGTCTC 2 cut(s) 384, 1360
BsaXI ACNNNNNCTCC 6 cut(s) 427, 457, 695, 725, 2071, 2101
Bsc4I CCNNNNNNNGG 7 cut(s) 29, 407, 596, 1652, 1663, 2137, 2586
Bse1I ACTGG 8 cut(s) 790, 847, 1543, 1951, 2073, 2106, 2290, 2721
Bse21I CCTNAGG 1 cut(s) 66
Bse3DI GCAATG 2 cut(s) 1320, 2560
Bse8I GATNNNNATC 3 cut(s) 99, 105, 354
BseGI GGATG 5 cut(s) 369, 672, 1657, 1805, 2573
BseJI GATNNNNATC 3 cut(s) 99, 105, 354
BseLI CCNNNNNNNGG 7 cut(s) 29, 407, 596, 1652, 1663, 2137, 2586
BseMI GCAATG 2 cut(s) 1320, 2560
BseMII CTCAG 8 cut(s) 57, 152, 488, 652, 1254, 1418, 1457, 2454
BseNI ACTGG 8 cut(s) 790, 847, 1543, 1951, 2073, 2106, 2290, 2721
BseRI GAGGAG 2 cut(s) 83, 716
BseSI GKGCMC 1 cut(s) 219
BseXI GCAGC 4 cut(s) 1138, 1558, 1996, 2048
BseYI CCCAGC 1 cut(s) 2502
BsgI GTGCAG 1 cut(s) 797
BshFI GGCC 5 cut(s) 36, 181, 600, 1029, 1656
BshNI GGYRCC 1 cut(s) 1582
BsiHKAI GWGCWC 2 cut(s) 343, 2709
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 1 cut(s) 2136
BslFI GGGAC 4 cut(s) 434, 740, 1827, 2254
BslI CCNNNNNNNGG 7 cut(s) 29, 407, 596, 1652, 1663, 2137, 2586
BsmAI GTCTC 6 cut(s) 24, 384, 687, 1360, 2011, 2155
BsmBI CGTCTC 3 cut(s) 24, 2011, 2155
BsmFI GGGAC 4 cut(s) 434, 740, 1827, 2254
BsmI GAATGC 5 cut(s) 380, 556, 568, 613, 1641
BsnI GGCC 5 cut(s) 36, 181, 600, 1029, 1656
Bso31I GGTCTC 2 cut(s) 384, 1360
BsoBI CYCGRG 1 cut(s) 336
Bsp1286I GDGCHC 3 cut(s) 219, 343, 2709
Bsp1407I TGTACA 1 cut(s) 1956
Bsp143I GATC 7 cut(s) 61, 100, 163, 491, 976, 1075, 2389
Bsp1720I GCTNAGC 1 cut(s) 2440
BspACI CCGC 4 cut(s) 367, 1154, 1977, 2591
BspANI GGCC 5 cut(s) 36, 181, 600, 1029, 1656
BspCNI CTCAG 8 cut(s) 58, 151, 487, 651, 1255, 1417, 1456, 2453
BspLI GGNNCC 5 cut(s) 437, 493, 1584, 1843, 1851
BspMAI CTGCAG 2 cut(s) 1863, 2620
BspOI GCTAGC 1 cut(s) 2009
BspPI GGATC 4 cut(s) 56, 486, 499, 1070
BspT107I GGYRCC 1 cut(s) 1582
BspTNI GGTCTC 2 cut(s) 384, 1360
BsrDI GCAATG 2 cut(s) 1320, 2560
BsrGI TGTACA 1 cut(s) 1956
BsrI ACTGG 8 cut(s) 790, 847, 1543, 1951, 2073, 2106, 2290, 2721
BssMI GATC 7 cut(s) 61, 100, 163, 491, 976, 1075, 2389
BssNI GRCGYC 1 cut(s) 313
BssSI CACGAG 1 cut(s) 2400
BssT1I CCWWGG 4 cut(s) 394, 1040, 1845, 2585
Bst2BI CACGAG 1 cut(s) 2400
Bst4CI ACNGT 9 cut(s) 596, 1088, 1141, 1371, 1390, 1436, 2146, 2335, 2682
Bst6I CTCTTC 2 cut(s) 406, 1554
BstACI GRCGYC 1 cut(s) 313
BstAPI GCANNNNNTGC 4 cut(s) 1589, 1793, 1918, 2600
BstAUI TGTACA 1 cut(s) 1956
BstBAI YACGTR 1 cut(s) 1418
BstC8I GCNNGC 6 cut(s) 369, 919, 1533, 2007, 2616, 2632
BstF5I GGATG 5 cut(s) 369, 672, 1657, 1805, 2573
BstHHI GCGC 1 cut(s) 821
BstKTI GATC 7 cut(s) 64, 103, 166, 494, 979, 1078, 2392
BstMAI GTCTC 6 cut(s) 24, 384, 687, 1360, 2011, 2155
BstMBI GATC 7 cut(s) 61, 100, 163, 491, 976, 1075, 2389
BstNSI RCATGY 1 cut(s) 733
BstPAI GACNNNNGTC 4 cut(s) 396, 732, 1944, 2277
BstSFI CTRYAG 3 cut(s) 1859, 2186, 2616
BstSLI GKGCMC 1 cut(s) 219
BstSNI TACGTA 1 cut(s) 1418
BstV1I GCAGC 4 cut(s) 1138, 1558, 1996, 2048
BstX2I RGATCY 2 cut(s) 491, 2389
BstXI CCANNNNNNTGG 1 cut(s) 1727
BstYI RGATCY 2 cut(s) 491, 2389
Bsu36I CCTNAGG 1 cut(s) 66
BsuI GTATCC 4 cut(s) 598, 1324, 2134, 2641
BsuRI GGCC 5 cut(s) 36, 181, 600, 1029, 1656
BtgZI GCGATG 1 cut(s) 2679
BtrI CACGTC 1 cut(s) 1219
BtsCI GGATG 5 cut(s) 369, 672, 1657, 1805, 2573
BtsI GCAGTG 2 cut(s) 329, 608
BtsIMutI CAGTG 8 cut(s) 88, 329, 608, 840, 874, 933, 2099, 2252
Cac8I GCNNGC 6 cut(s) 369, 919, 1533, 2007, 2616, 2632
CaiI CAGNNNCTG 1 cut(s) 2675
CfoI GCGC 1 cut(s) 821
Cfr13I GGNCC 8 cut(s) 398, 845, 851, 1001, 1655, 1841, 1924, 1979
CseI GACGC 4 cut(s) 321, 543, 2028, 2051
CsiI ACCWGGT 1 cut(s) 28
CspCI CAANNNNNGTGG 4 cut(s) 262, 297, 968, 1003
CviAII CATG 7 cut(s) 432, 730, 746, 1784, 2358, 2710, 2731
DpnI GATC 7 cut(s) 63, 102, 165, 493, 978, 1077, 2391
DpnII GATC 7 cut(s) 61, 100, 163, 491, 976, 1075, 2389
DraI TTTAAA 3 cut(s) 354, 663, 1578
Eam1104I CTCTTC 2 cut(s) 406, 1554
EarI CTCTTC 2 cut(s) 406, 1554
EciI GGCGGA 1 cut(s) 1992
Eco105I TACGTA 1 cut(s) 1418
Eco130I CCWWGG 4 cut(s) 394, 1040, 1845, 2585
Eco147I AGGCCT 1 cut(s) 1029
Eco31I GGTCTC 2 cut(s) 384, 1360
Eco47I GGWCC 7 cut(s) 398, 845, 851, 1001, 1841, 1924, 1979
Eco57I CTGAAG 2 cut(s) 1016, 1587
Eco81I CCTNAGG 1 cut(s) 66
Eco88I CYCGRG 1 cut(s) 336
EcoRI GAATTC 1 cut(s) 2295
EcoT14I CCWWGG 4 cut(s) 394, 1040, 1845, 2585
EcoT22I ATGCAT 2 cut(s) 568, 1789
ErhI CCWWGG 4 cut(s) 394, 1040, 1845, 2585
Esp3I CGTCTC 3 cut(s) 24, 2011, 2155
FaeI CATG 7 cut(s) 435, 733, 749, 1787, 2361, 2713, 2734
FalI AAGNNNNNCTT 4 cut(s) 2333, 2365, 2623, 2655
FaqI GGGAC 4 cut(s) 434, 740, 1827, 2254
FatI CATG 7 cut(s) 431, 729, 745, 1783, 2357, 2709, 2730
FauI CCCGC 2 cut(s) 360, 1147
FbaI TGATCA 2 cut(s) 163, 976
FblI GTMKAC 1 cut(s) 121
Fnu4HI GCNGC 5 cut(s) 1152, 1572, 2010, 2037, 2592
FokI GGATG 5 cut(s) 376, 659, 1664, 1792, 2560
Fsp4HI GCNGC 5 cut(s) 1152, 1572, 2010, 2037, 2592
GlaI GCGC 1 cut(s) 820
GluI GCNGC 5 cut(s) 1152, 1572, 2010, 2037, 2592
GsaI CCCAGC 1 cut(s) 2506
GsuI CTGGAG 3 cut(s) 408, 2056, 2533
HaeIII GGCC 5 cut(s) 36, 181, 600, 1029, 1656
HapII CCGG 1 cut(s) 2136
HgaI GACGC 4 cut(s) 321, 543, 2028, 2051
HhaI GCGC 1 cut(s) 821
Hin1I GRCGYC 1 cut(s) 313
Hin1II CATG 7 cut(s) 435, 733, 749, 1787, 2361, 2713, 2734
Hin6I GCGC 1 cut(s) 819
HinP1I GCGC 1 cut(s) 819
HincII GTYRAC 3 cut(s) 1432, 2118, 2535
HindII GTYRAC 3 cut(s) 1432, 2118, 2535
HindIII AAGCTT 1 cut(s) 1961
HpaII CCGG 1 cut(s) 2136
HphI GGTGA 7 cut(s) 1029, 2000, 2375, 2573, 2711, 2732, 2770
Hpy166II GTNNAC 8 cut(s) 122, 251, 635, 1160, 1432, 2118, 2535, 2723
Hpy8I GTNNAC 8 cut(s) 122, 251, 635, 1160, 1432, 2118, 2535, 2723
Hpy99I CGWCG 2 cut(s) 1950, 2150
HpyAV CCTTC 8 cut(s) 67, 506, 1040, 1089, 1216, 1452, 2501, 2736
HpyCH4III ACNGT 9 cut(s) 596, 1088, 1141, 1371, 1390, 1436, 2146, 2335, 2682
HpyCH4IV ACGT 4 cut(s) 442, 1218, 1417, 2750
HpySE526I ACGT 4 cut(s) 442, 1218, 1417, 2750
Hsp92I GRCGYC 1 cut(s) 313
Hsp92II CATG 7 cut(s) 435, 733, 749, 1787, 2361, 2713, 2734
HspAI GCGC 1 cut(s) 819
Ksp22I TGATCA 2 cut(s) 163, 976
Kzo9I GATC 7 cut(s) 61, 100, 163, 491, 976, 1075, 2389
LmnI GCTCC 3 cut(s) 435, 703, 1855
Lsp1109I GCAGC 4 cut(s) 1138, 1558, 1996, 2048
MabI ACCWGGT 1 cut(s) 28
MaeII ACGT 4 cut(s) 442, 1218, 1417, 2750
MaeIII GTNAC 7 cut(s) 931, 1035, 1270, 1278, 2329, 2513, 2543
MalI GATC 7 cut(s) 63, 102, 165, 493, 978, 1077, 2391
MboI GATC 7 cut(s) 61, 100, 163, 491, 976, 1075, 2389
MboII GAAGA 9 cut(s) 423, 648, 782, 791, 867, 1571, 1752, 1755, 2399
MfeI CAATTG 1 cut(s) 618
MflI RGATCY 2 cut(s) 491, 2389
MhlI GDGCHC 3 cut(s) 219, 343, 2709
MlyI GAGTC 8 cut(s) 416, 759, 790, 1052, 1286, 2176, 2236, 2774
MmeI TCCRAC 1 cut(s) 2400
Mph1103I ATGCAT 2 cut(s) 568, 1789
MseI TTAA 7 cut(s) 8, 353, 662, 1577, 1889, 2519, 2788
MspA1I CMGCKG 3 cut(s) 478, 1703, 2039
MspI CCGG 1 cut(s) 2136
MunI CAATTG 1 cut(s) 618
Mva1269I GAATGC 5 cut(s) 380, 556, 568, 613, 1641
NciI CCSGG 1 cut(s) 2137
NdeII GATC 7 cut(s) 61, 100, 163, 491, 976, 1075, 2389
NheI GCTAGC 1 cut(s) 2005
NlaIII CATG 7 cut(s) 435, 733, 749, 1787, 2361, 2713, 2734
NlaIV GGNNCC 5 cut(s) 437, 493, 1584, 1843, 1851
NmuCI GTSAC 4 cut(s) 931, 1035, 1278, 2513
NsiI ATGCAT 2 cut(s) 568, 1789
NspI RCATGY 1 cut(s) 733
PaeR7I CTCGAG 1 cut(s) 336
PceI AGGCCT 1 cut(s) 1029
PciI ACATGT 1 cut(s) 729
PcsI WCGNNNNNNNCGW 1 cut(s) 130
PctI GAATGC 5 cut(s) 380, 556, 568, 613, 1641
PfeI GAWTC 5 cut(s) 236, 446, 2218, 2396, 2672
PflMI CCANNNNNTGG 2 cut(s) 596, 1652
PfoI TCCNGGA 3 cut(s) 557, 580, 847
PkrI GCNGC 5 cut(s) 1153, 1573, 2011, 2038, 2593
PleI GAGTC 8 cut(s) 416, 758, 789, 1052, 1285, 2176, 2236, 2773
PpsI GAGTC 8 cut(s) 416, 758, 789, 1052, 1285, 2176, 2236, 2773
Ppu21I YACGTR 1 cut(s) 1418
PscI ACATGT 1 cut(s) 729
PshAI GACNNNNGTC 4 cut(s) 396, 732, 1944, 2277
PsiI TTATAA 1 cut(s) 267
PspFI CCCAGC 1 cut(s) 2502
PspN4I GGNNCC 5 cut(s) 437, 493, 1584, 1843, 1851
PspPI GGNCC 8 cut(s) 398, 845, 851, 1001, 1655, 1841, 1924, 1979
PspXI VCTCGAGB 1 cut(s) 336
PsrI GAACNNNNNNTAC 4 cut(s) 1129, 1161, 2337, 2369
PstI CTGCAG 2 cut(s) 1863, 2620
PstNI CAGNNNCTG 1 cut(s) 2675
PsuI RGATCY 2 cut(s) 491, 2389
PvuII CAGCTG 3 cut(s) 478, 1703, 2039
SaqAI TTAA 7 cut(s) 8, 353, 662, 1577, 1889, 2519, 2788
SatI GCNGC 5 cut(s) 1152, 1572, 2010, 2037, 2592
Sau3AI GATC 7 cut(s) 61, 100, 163, 491, 976, 1075, 2389
Sau96I GGNCC 8 cut(s) 398, 845, 851, 1001, 1655, 1841, 1924, 1979
SchI GAGTC 8 cut(s) 416, 759, 790, 1052, 1286, 2176, 2236, 2774
SduI GDGCHC 3 cut(s) 219, 343, 2709
SexAI ACCWGGT 1 cut(s) 28
SfcI CTRYAG 3 cut(s) 1859, 2186, 2616
Sfr274I CTCGAG 1 cut(s) 336
SinI GGWCC 7 cut(s) 398, 845, 851, 1001, 1841, 1924, 1979
SlaI CTCGAG 1 cut(s) 336
SmiI ATTTAAAT 1 cut(s) 354
SmlI CTYRAG 3 cut(s) 240, 336, 1964
SmoI CTYRAG 3 cut(s) 240, 336, 1964
SnaBI TACGTA 1 cut(s) 1418
SseBI AGGCCT 1 cut(s) 1029
SsiI CCGC 4 cut(s) 367, 1154, 1977, 2591
StuI AGGCCT 1 cut(s) 1029
StyI CCWWGG 4 cut(s) 394, 1040, 1845, 2585
SwaI ATTTAAAT 1 cut(s) 354
TaaI ACNGT 9 cut(s) 596, 1088, 1141, 1371, 1390, 1436, 2146, 2335, 2682
TaiI ACGT 4 cut(s) 445, 1221, 1420, 2753
TaqI TCGA 4 cut(s) 103, 337, 348, 2771
TatI WGTACW 4 cut(s) 248, 1166, 1956, 2171
TauI GCSGC 1 cut(s) 2594
TfiI GAWTC 5 cut(s) 236, 446, 2218, 2396, 2672
Tru1I TTAA 7 cut(s) 8, 353, 662, 1577, 1889, 2519, 2788
Tru9I TTAA 7 cut(s) 8, 353, 662, 1577, 1889, 2519, 2788
TscAI CASTG 8 cut(s) 88, 336, 615, 847, 874, 940, 2106, 2259
TseFI GTSAC 4 cut(s) 931, 1035, 1278, 2513
TseI GCWGC 4 cut(s) 1151, 1571, 2009, 2036
Tsp45I GTSAC 4 cut(s) 931, 1035, 1278, 2513
TspDTI ATGAA 8 cut(s) 905, 1065, 1137, 1283, 1499, 1713, 1772, 2726
TspGWI ACGGA 2 cut(s) 641, 1948
TspRI CASTG 8 cut(s) 88, 336, 615, 847, 874, 940, 2106, 2259
Van91I CCANNNNNTGG 2 cut(s) 596, 1652
VpaK11BI GGWCC 7 cut(s) 398, 845, 851, 1001, 1841, 1924, 1979
XapI RAATTY 5 cut(s) 664, 1487, 1876, 2295, 2522
XceI RCATGY 1 cut(s) 733
XcmI CCANNNNNNNNNTGG 1 cut(s) 383
XhoI CTCGAG 1 cut(s) 336
XmaJI CCTAGG 2 cut(s) 1040, 2585
XmiI GTMKAC 1 cut(s) 121
Zsp2I ATGCAT 2 cut(s) 568, 1789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.