Rorug02G0564800

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000371
Physical Location & Seq
Reverse (-)
68996949 .. 69004008
7060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0564800.1

Sequence Viewer

Length: 2412 bp
ATGCAGGGCTCGTCGTCGAGCTCTGCGGCTCAGCCGGAGGCCATACTGGAGTGGCTTCAGAAGGAAATGGGGTACCGACCCTTGGGCCCTTACGGTGGCGCCGCCTCCAGCAAATCCCAATTGCCGTCAATCGACGCCGTGAGGAAGATTTGCAGGGGGAACATGATACCCATTTGGAACTTCTTGATCACGCGCGTGAAGTCGGAGAGTACTGTGAAGAATATTCGGAGGAATATTACGGTGCACGGCGACAGCGGCGGCGCGTTGGTGAAGTTGGGGAAGGAGGAGGGGAGGAGTAAAGGGGGGAGGAGGAAGGAGAAGGCTGGGGAGAGTTCGAGTGCGGCGGAGGTCAGGGAGGCGGCGCTGCAGGAGAGGGTGGCGGCGGAGAAGGAGGTGGAGAAGTTGAGGAATATTGTCAAGAGGCAGAGGAAGGATTTGAAGGCTAGAATGCTGGAGGTTTCGAGGGCCGAGGCCGAGAGGAAGAGGATGCTTGATGAAAGATCAAAGAAAAGGCATAAGCAGGTGATGTTGGACGCGTACTATCTACAGTGTGAGGAAGCGGAAAAAATATTTGCAGAGTATCATAAACGTCTCTGTTATTATGTTAATCAAGCCAGGGATTCTCAAAGGTTAAGTGTGGACTCGTCTCTTGAATTGGTTAATAGCTTTAGTTCCAACAGTGAAAAGGAGGCTGTTTATTCAACACTTAGGGGCAGTAAAGCTGCAGATGATGTGCTTCTTATTGAAACCACTCGGGAAAGAAACATACGGAAGGCCTGTGAATCTCTTGCAGCACATATGATTGAAAAGATTCGCAATTCCTTTCCTGCGTATGAAGGAAGTGGTATTCATTTAAGTCCTCAGTTAGAAGCAGCCAAGTTAGGATTTGAATTTGATGGGGAATTACCTGAGGAGGTCAGAGGTGCAATTCTGAATGGCCTGAAGAGTCCTCCTCAGTTGCTTCAGGCAATTACGTCATACACATCACGATTGAAATCTCTAATTTCCAGAGAAATAGAGAAAATAGATGTAAGAGCTGATGCAGAAACTTTAAGGTACAAGTATGAAAACAACCGAGTTATAGATGTTTCTTCTCCTGATGTGAGTTCACCTTTACACTATCAACTTTATGGTAATGGAAAGATAGGAGTTGATGCACCATCAAGAGGAACTCAGCTTCTTGAAAGACAGAATAGTCGGGCTAAACCCCAATGCCATAGAAGATCATACTGTTTAAATAAAGCCCATGTTCAGCAATTTTTGGCTACTGAAGATGCACTGAACAAAGCTGCAGAAGCTAGGAGTCTGTGTCAAAATCTTATAAAGCGTTTGCATGGAAATAGTGATGGAGTTTCTTCAGGCATATCACAGAATGTAGGCAGTCTTAGGCAACTTGAGTTGGAGGTTTGGGCCAAGGAAAGAGAAGTTGCCGGCTTGAGGGCTAGCTTGAATACGCTAATGTCTGAAATACAACGCCTGAATAAATTATGTGCAGAAAGAAAAGAAGCTGAAGATTCATTGAAAAAGAAGTGGAAAAAGATTGAAGAATTTGATTCCCGCAGATCTGAACTGGAAACCATATATACTGCTCTACTAAAAGTTAACATGGATGCTGCCGCCTTCTGGAATCAGCAGCCATTAGCTGCAAGGGAGTATGCATCAAGCACTATTATTCCAGCATGCACAATAGTTATGGATCTTTCAAATAATGCAAAAGATCTTATTGAAAAAGAAGTATCTGCTTTTGATCAAAGTCCTGATAATAGTCTCTACATGCTTCCAGCAACTCCACAGGCACTATTGGAGTCAATGGGTGCAAACGGCTCGACTGGACCTGAAGCTGTTGCTGCTGCAGAAAAGAATGCAGCTATATTAACTGCAAAAGCAGGTGCTAGGGATCCATCAGCAATACCATCCATATGTCGTGTATCAGCCGCCCTTCAGTATCCTGGTGGTCTGGAGGGTTCAGATGCTGCTTTAGCATCAGTGTTAGAGTCGCTGGAGTTCTGTTTGAAACTTCGTGGTTCTGAGGCTAGCGTGTTGGAGGACTTAGCAAAGGCAATCAATTTGGTCCATACACGACAGGACCTTGTTGAAAGTGGTCATGTGCTGTTGAACCATGCCTATAGAGCTCAACAAGAATATGATAGGAAAACGAGTTTTTGTTTAAATTTGGCTGCTGAGCAAGAGAGAACTGTCACAGAGAAATGGTTGCCAGAACTTAAGACTGCAATTTTGAATGCTCAGAAGTGCTTGGAAGACTGCAATTATGTTAGAGGATTGCTTGATGAATGGTGGGAGCAACCAGCGGCAACTGTTGTTGACTGGGTCCTAGTTGATGGATTAAATGTCGCTGCTTGGCACAATCATGTGAAGCAGCTTCTTGCATTTTATGATCAGGAGCACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

803

Amino Acids

89.49

Weight (kDa)

8.04

Isoelectric Point (pI)

53.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAUS5 PF14817 12 - 789 3.4e-241 HAUS augmin-like complex subunit 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1322
AarI CACCTGC 2 cut(s) 511, 1877
AasI GACNNNNNNGTC 1 cut(s) 1194
Acc36I ACCTGC 2 cut(s) 511, 1877
Acc65I GGTACC 1 cut(s) 72
AccB1I GGYRCC 2 cut(s) 72, 98
AccII CGCG 4 cut(s) 193, 195, 263, 536
AclWI GGATC 3 cut(s) 1704, 1892, 1905
AcsI RAATTY 3 cut(s) 890, 1547, 2170
AcuI CTGAAG 8 cut(s) 41, 947, 962, 1290, 1341, 1530, 1857, 1925
AcyI GRCGYC 2 cut(s) 99, 135
AfaI GTAC 4 cut(s) 74, 211, 539, 1058
AfiI CCNNNNNNNGG 5 cut(s) 82, 95, 1166, 1437, 1623
AflII CTTAAG 1 cut(s) 2222
AflIII ACRYGT 2 cut(s) 534, 2406
AjnI CCWGG 2 cut(s) 614, 1948
AleI CACNNNNGTG 1 cut(s) 194
Alw21I GWGCWC 4 cut(s) 23, 246, 2134, 2406
Alw26I GTCTC 3 cut(s) 596, 651, 1772
Alw44I GTGCAC 1 cut(s) 242
AlwI GGATC 3 cut(s) 1704, 1892, 1905
AlwNI CAGNNNCTG 1 cut(s) 1973
Ama87I CYCGRG 1 cut(s) 753
AoxI GGCC 7 cut(s) 39, 85, 465, 471, 774, 937, 1410
ApaI GGGCCC 1 cut(s) 89
ApaLI GTGCAC 1 cut(s) 242
ApoI RAATTY 3 cut(s) 890, 1547, 2170
ArsI GACNNNNNNTTYG 2 cut(s) 2218, 2250
Asp700I GAANNNNTTC 1 cut(s) 810
Asp718I GGTACC 1 cut(s) 72
AspLEI GCGC 4 cut(s) 101, 195, 263, 364
AspS9I GGNCC 8 cut(s) 85, 86, 465, 1410, 1832, 2071, 2086, 2329
AsuHPI GGTGA 3 cut(s) 280, 535, 1101
AsuNHI GCTAGC 2 cut(s) 1442, 2033
AvaI CYCGRG 1 cut(s) 753
AvaII GGWCC 4 cut(s) 1832, 2071, 2086, 2329
AxyI CCTNAGG 1 cut(s) 909
BaeGI GKGCMC 2 cut(s) 89, 246
BamHI GGATCC 1 cut(s) 1897
BanI GGYRCC 2 cut(s) 72, 98
BanII GRGCYC 4 cut(s) 11, 23, 89, 2134
BbsI GAAGAC 1 cut(s) 2265
Bbv12I GWGCWC 4 cut(s) 23, 246, 2134, 2406
BccI CCATC 6 cut(s) 890, 1168, 1340, 1909, 1921, 2333
BceAI ACGGC 4 cut(s) 109, 122, 262, 1837
BcgI CGANNNNNNTGC 2 cut(s) 1806, 1840
BciT130I CCWGG 2 cut(s) 616, 1950
BciVI GTATCC 1 cut(s) 1956
BclI TGATCA 3 cut(s) 186, 1747, 2395
BcoDI GTCTC 3 cut(s) 596, 651, 1772
BfaI CTAG 6 cut(s) 444, 1299, 1443, 1893, 2034, 2333
BfmI CTRYAG 6 cut(s) 365, 545, 723, 1290, 1851, 2125
BfoI RGCGCY 2 cut(s) 102, 365
BfrI CTTAAG 1 cut(s) 2222
BfuAI ACCTGC 2 cut(s) 511, 1877
BfuI GTATCC 1 cut(s) 1956
BglII AGATCT 2 cut(s) 1562, 1717
BlpI GCTNAGC 2 cut(s) 30, 2181
BmcAI AGTACT 1 cut(s) 211
Bme1390I CCNGG 2 cut(s) 616, 1950
Bme18I GGWCC 4 cut(s) 1832, 2071, 2086, 2329
BmeT110I CYCGRG 1 cut(s) 753
BmgT120I GGNCC 8 cut(s) 85, 86, 465, 1410, 1832, 2071, 2086, 2329
BmiI GGNNCC 5 cut(s) 74, 87, 100, 1899, 2330
BmrFI CCNGG 2 cut(s) 616, 1950
BmrI ACTGGG 1 cut(s) 2335
BmsI GCATC 8 cut(s) 477, 1030, 1144, 1264, 1600, 1667, 1960, 1991
BmtI GCTAGC 2 cut(s) 1446, 2037
BmuI ACTGGG 1 cut(s) 2335
BpiI GAAGAC 1 cut(s) 2265
BplI GAGNNNNNCTC 2 cut(s) 937, 969
BpmI CTGGAG 5 cut(s) 68, 91, 473, 1979, 2021
Bpu1102I GCTNAGC 2 cut(s) 30, 2181
BpuEI CTTGAG 2 cut(s) 1415, 1456
BsaBI GATNNNNATC 1 cut(s) 994
BsaHI GRCGYC 2 cut(s) 99, 135
BsaJI CCNNGG 4 cut(s) 81, 468, 615, 1413
BsaXI ACNNNNNCTCC 3 cut(s) 1294, 1324, 2393
Bsc4I CCNNNNNNNGG 5 cut(s) 82, 95, 1166, 1437, 1623
Bse118I RCCGGY 1 cut(s) 1430
Bse1I ACTGG 4 cut(s) 51, 1575, 1834, 2330
Bse21I CCTNAGG 1 cut(s) 909
Bse8I GATNNNNATC 1 cut(s) 994
BseBI CCWGG 2 cut(s) 616, 1950
BseDI CCNNGG 4 cut(s) 81, 468, 615, 1413
BseGI GGATG 3 cut(s) 492, 1615, 1913
BseJI GATNNNNATC 1 cut(s) 994
BseLI CCNNNNNNNGG 5 cut(s) 82, 95, 1166, 1437, 1623
BseMII CTCAG 8 cut(s) 44, 875, 900, 968, 1187, 2019, 2172, 2258
BseNI ACTGG 4 cut(s) 51, 1575, 1834, 2330
BseRI GAGGAG 5 cut(s) 299, 307, 322, 926, 942
BseSI GKGCMC 2 cut(s) 89, 246
BseYI CCCAGC 1 cut(s) 323
BsgI GTGCAG 1 cut(s) 1512
Bsh1236I CGCG 4 cut(s) 193, 195, 263, 536
BshFI GGCC 7 cut(s) 41, 87, 467, 473, 776, 939, 1412
BshNI GGYRCC 2 cut(s) 72, 98
BsiHKAI GWGCWC 4 cut(s) 23, 246, 2134, 2406
BsiHKCI CYCGRG 1 cut(s) 753
BsiSI CCGG 2 cut(s) 35, 1431
BslI CCNNNNNNNGG 5 cut(s) 82, 95, 1166, 1437, 1623
BsmAI GTCTC 3 cut(s) 596, 651, 1772
BsmBI CGTCTC 2 cut(s) 596, 651
BsmI GAATGC 3 cut(s) 453, 1867, 2245
BsnI GGCC 7 cut(s) 41, 87, 467, 473, 776, 939, 1412
BsoBI CYCGRG 1 cut(s) 753
Bsp120I GGGCCC 1 cut(s) 85
Bsp1286I GDGCHC 6 cut(s) 11, 23, 89, 246, 2134, 2406
Bsp143I GATC 9 cut(s) 186, 500, 1223, 1562, 1696, 1717, 1747, 1897, 2395
Bsp1720I GCTNAGC 2 cut(s) 30, 2181
BspANI GGCC 7 cut(s) 41, 87, 467, 473, 776, 939, 1412
BspCNI CTCAG 8 cut(s) 43, 874, 901, 967, 1186, 2020, 2173, 2257
BspFNI CGCG 4 cut(s) 193, 195, 263, 536
BspLI GGNNCC 5 cut(s) 74, 87, 100, 1899, 2330
BspMAI CTGCAG 4 cut(s) 369, 727, 1294, 1855
BspMI ACCTGC 2 cut(s) 511, 1877
BspOI GCTAGC 2 cut(s) 1446, 2037
BspPI GGATC 3 cut(s) 1704, 1892, 1905
BspT107I GGYRCC 2 cut(s) 72, 98
BspTI CTTAAG 1 cut(s) 2222
BsrFI RCCGGY 1 cut(s) 1430
BsrI ACTGG 4 cut(s) 51, 1575, 1834, 2330
BssAI RCCGGY 1 cut(s) 1430
BssECI CCNNGG 4 cut(s) 81, 468, 615, 1413
BssMI GATC 9 cut(s) 186, 500, 1223, 1562, 1696, 1717, 1747, 1897, 2395
BssNI GRCGYC 2 cut(s) 99, 135
BssT1I CCWWGG 2 cut(s) 81, 1413
Bst2UI CCWGG 2 cut(s) 616, 1950
Bst4CI ACNGT 8 cut(s) 95, 214, 241, 549, 680, 1232, 2197, 2317
Bst6I CTCTTC 2 cut(s) 476, 938
BstACI GRCGYC 2 cut(s) 99, 135
BstAFI CTTAAG 1 cut(s) 2222
BstC8I GCNNGC 4 cut(s) 1432, 1444, 1681, 2035
BstF5I GGATG 3 cut(s) 492, 1615, 1913
BstFNI CGCG 4 cut(s) 193, 195, 263, 536
BstH2I RGCGCY 2 cut(s) 102, 365
BstHHI GCGC 4 cut(s) 101, 195, 263, 364
BstKTI GATC 9 cut(s) 189, 503, 1226, 1565, 1699, 1720, 1750, 1900, 2398
BstMAI GTCTC 3 cut(s) 596, 651, 1772
BstMBI GATC 9 cut(s) 186, 500, 1223, 1562, 1696, 1717, 1747, 1897, 2395
BstMWI GCNNNNNNNGC 5 cut(s) 255, 1295, 1847, 1979, 2129
BstNI CCWGG 2 cut(s) 616, 1950
BstNSI RCATGY 3 cut(s) 1683, 1777, 2410
BstSCI CCNGG 2 cut(s) 614, 1948
BstSFI CTRYAG 6 cut(s) 365, 545, 723, 1290, 1851, 2125
BstSLI GKGCMC 2 cut(s) 89, 246
BstUI CGCG 4 cut(s) 193, 195, 263, 536
BstV2I GAAGAC 1 cut(s) 2265
BstX2I RGATCY 4 cut(s) 1562, 1696, 1717, 1897
BstYI RGATCY 4 cut(s) 1562, 1696, 1717, 1897
Bsu36I CCTNAGG 1 cut(s) 909
BsuI GTATCC 1 cut(s) 1956
BsuRI GGCC 7 cut(s) 41, 87, 467, 473, 776, 939, 1412
BtsCI GGATG 3 cut(s) 492, 1615, 1913
BtsIMutI CAGTG 4 cut(s) 554, 685, 1277, 1992
BveI ACCTGC 2 cut(s) 511, 1877
Cac8I GCNNGC 4 cut(s) 1432, 1444, 1681, 2035
CaiI CAGNNNCTG 1 cut(s) 1973
CfoI GCGC 4 cut(s) 101, 195, 263, 364
Cfr10I RCCGGY 1 cut(s) 1430
Cfr13I GGNCC 8 cut(s) 85, 86, 465, 1410, 1832, 2071, 2086, 2329
CseI GACGC 2 cut(s) 143, 542
Csp6I GTAC 4 cut(s) 73, 210, 538, 1057
CviQI GTAC 4 cut(s) 73, 210, 538, 1057
DinI GGCGCC 1 cut(s) 100
DpnI GATC 9 cut(s) 188, 502, 1225, 1564, 1698, 1719, 1749, 1899, 2397
DpnII GATC 9 cut(s) 186, 500, 1223, 1562, 1696, 1717, 1747, 1897, 2395
DraI TTTAAA 2 cut(s) 1236, 2169
DrdI GACNNNNNNGTC 1 cut(s) 1194
DseDI GACNNNNNNGTC 1 cut(s) 1194
Eam1104I CTCTTC 2 cut(s) 476, 938
EarI CTCTTC 2 cut(s) 476, 938
EciI GGCGGA 2 cut(s) 359, 398
Ecl136II GAGCTC 2 cut(s) 21, 2132
Eco130I CCWWGG 2 cut(s) 81, 1413
Eco147I AGGCCT 1 cut(s) 776
Eco24I GRGCYC 4 cut(s) 11, 23, 89, 2134
Eco47I GGWCC 4 cut(s) 1832, 2071, 2086, 2329
Eco53kI GAGCTC 2 cut(s) 21, 2132
Eco57I CTGAAG 8 cut(s) 41, 947, 962, 1290, 1341, 1530, 1857, 1925
Eco81I CCTNAGG 1 cut(s) 909
Eco88I CYCGRG 1 cut(s) 753
EcoICRI GAGCTC 2 cut(s) 21, 2132
EcoO109I RGGNCCY 3 cut(s) 86, 2086, 2329
EcoRII CCWGG 2 cut(s) 614, 1948
EcoT14I CCWWGG 2 cut(s) 81, 1413
EcoT22I ATGCAT 1 cut(s) 1660
EcoT38I GRGCYC 4 cut(s) 11, 23, 89, 2134
EgeI GGCGCC 1 cut(s) 100
EheI GGCGCC 1 cut(s) 100
ErhI CCWWGG 2 cut(s) 81, 1413
Esp3I CGTCTC 2 cut(s) 596, 651
FauI CCCGC 1 cut(s) 1565
FauNDI CATATG 2 cut(s) 798, 1919
FbaI TGATCA 3 cut(s) 186, 1747, 2395
FokI GGATG 3 cut(s) 499, 1622, 1900
FriOI GRGCYC 4 cut(s) 11, 23, 89, 2134
FspBI CTAG 6 cut(s) 444, 1299, 1443, 1893, 2034, 2333
GlaI GCGC 4 cut(s) 100, 194, 262, 363
GsaI CCCAGC 1 cut(s) 327
GsuI CTGGAG 5 cut(s) 68, 91, 473, 1979, 2021
HaeII RGCGCY 2 cut(s) 102, 365
HaeIII GGCC 7 cut(s) 41, 87, 467, 473, 776, 939, 1412
HapII CCGG 2 cut(s) 35, 1431
HgaI GACGC 2 cut(s) 143, 542
HhaI GCGC 4 cut(s) 101, 195, 263, 364
Hin1I GRCGYC 2 cut(s) 99, 135
Hin6I GCGC 4 cut(s) 99, 193, 261, 362
HinP1I GCGC 4 cut(s) 99, 193, 261, 362
HincII GTYRAC 2 cut(s) 1603, 2323
HindII GTYRAC 2 cut(s) 1603, 2323
HpaI GTTAAC 1 cut(s) 1603
HpaII CCGG 2 cut(s) 35, 1431
HphI GGTGA 3 cut(s) 280, 535, 1101
Hpy166II GTNNAC 5 cut(s) 244, 640, 1109, 1603, 2323
Hpy8I GTNNAC 5 cut(s) 244, 640, 1109, 1603, 2323
Hpy99I CGWCG 3 cut(s) 16, 19, 137
HpyCH4III ACNGT 8 cut(s) 95, 214, 241, 549, 680, 1232, 2197, 2317
HpyCH4IV ACGT 2 cut(s) 589, 974
HpyF10VI GCNNNNNNNGC 5 cut(s) 255, 1295, 1847, 1979, 2129
HpySE526I ACGT 2 cut(s) 589, 974
Hsp92I GRCGYC 2 cut(s) 99, 135
HspAI GCGC 4 cut(s) 99, 193, 261, 362
KasI GGCGCC 1 cut(s) 98
KpnI GGTACC 1 cut(s) 76
KroI GCCGGC 1 cut(s) 1430
KroNI GCCGGC 1 cut(s) 1432
Ksp22I TGATCA 3 cut(s) 186, 1747, 2395
KspAI GTTAAC 1 cut(s) 1603
Kzo9I GATC 9 cut(s) 186, 500, 1223, 1562, 1696, 1717, 1747, 1897, 2395
LmnI GCTCC 2 cut(s) 2299, 2401
LweI GCATC 8 cut(s) 477, 1030, 1144, 1264, 1600, 1667, 1960, 1991
MaeI CTAG 6 cut(s) 444, 1299, 1443, 1893, 2034, 2333
MaeII ACGT 2 cut(s) 589, 974
MaeIII GTNAC 1 cut(s) 2197
MalI GATC 9 cut(s) 188, 502, 1225, 1564, 1698, 1719, 1749, 1899, 2397
MboI GATC 9 cut(s) 186, 500, 1223, 1562, 1696, 1717, 1747, 1897, 2395
MfeI CAATTG 1 cut(s) 119
MflI RGATCY 4 cut(s) 1562, 1696, 1717, 1897
MhlI GDGCHC 6 cut(s) 11, 23, 89, 246, 2134, 2406
MluI ACGCGT 1 cut(s) 534
Mly113I GGCGCC 1 cut(s) 99
MlyI GAGTC 5 cut(s) 635, 955, 1312, 1814, 2003
MmeI TCCRAC 5 cut(s) 183, 510, 699, 1380, 2022
Mph1103I ATGCAT 1 cut(s) 1660
MroNI GCCGGC 1 cut(s) 1430
MroXI GAANNNNTTC 1 cut(s) 810
MslI CAYNNNNRTG 3 cut(s) 194, 1918, 2367
MspA1I CMGCKG 2 cut(s) 255, 2309
MspCI CTTAAG 1 cut(s) 2222
MspI CCGG 2 cut(s) 35, 1431
MspR9I CCNGG 2 cut(s) 616, 1950
MunI CAATTG 1 cut(s) 119
Mva1269I GAATGC 3 cut(s) 453, 1867, 2245
MvaI CCWGG 2 cut(s) 616, 1950
MvnI CGCG 4 cut(s) 193, 195, 263, 536
MwoI GCNNNNNNNGC 5 cut(s) 255, 1295, 1847, 1979, 2129
NaeI GCCGGC 1 cut(s) 1432
NarI GGCGCC 1 cut(s) 99
NdeI CATATG 2 cut(s) 798, 1919
NdeII GATC 9 cut(s) 186, 500, 1223, 1562, 1696, 1717, 1747, 1897, 2395
NgoMIV GCCGGC 1 cut(s) 1430
NheI GCTAGC 2 cut(s) 1442, 2033
NlaIV GGNNCC 5 cut(s) 74, 87, 100, 1899, 2330
NmeAIII GCCGAG 2 cut(s) 493, 499
NmuCI GTSAC 1 cut(s) 2197
NsiI ATGCAT 1 cut(s) 1660
NspI RCATGY 3 cut(s) 1683, 1777, 2410
OliI CACNNNNGTG 1 cut(s) 194
PaeI GCATGC 1 cut(s) 1683
PaqCI CACCTGC 2 cut(s) 511, 1877
PceI AGGCCT 1 cut(s) 776
PciI ACATGT 1 cut(s) 2406
PctI GAATGC 3 cut(s) 453, 1867, 2245
PdiI GCCGGC 1 cut(s) 1432
PdmI GAANNNNTTC 1 cut(s) 810
PfeI GAWTC 6 cut(s) 620, 782, 811, 1514, 1553, 1627
PflFI GACNNNGTC 1 cut(s) 2327
PleI GAGTC 5 cut(s) 635, 954, 1311, 1813, 2002
PluTI GGCGCC 1 cut(s) 102
PpsI GAGTC 5 cut(s) 635, 954, 1311, 1813, 2002
PpuMI RGGWCCY 2 cut(s) 2086, 2329
PscI ACATGT 1 cut(s) 2406
PsiI TTATAA 1 cut(s) 1322
Psp124BI GAGCTC 2 cut(s) 23, 2134
Psp5II RGGWCCY 2 cut(s) 2086, 2329
Psp6I CCWGG 2 cut(s) 614, 1948
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 2 cut(s) 614, 1948
PspN4I GGNNCC 5 cut(s) 74, 87, 100, 1899, 2330
PspOMI GGGCCC 1 cut(s) 85
PspPI GGNCC 8 cut(s) 85, 86, 465, 1410, 1832, 2071, 2086, 2329
PspPPI RGGWCCY 2 cut(s) 2086, 2329
PstI CTGCAG 4 cut(s) 369, 727, 1294, 1855
PstNI CAGNNNCTG 1 cut(s) 1973
PsuI RGATCY 4 cut(s) 1562, 1696, 1717, 1897
PsyI GACNNNGTC 1 cut(s) 2327
RsaI GTAC 4 cut(s) 74, 211, 539, 1058
RsaNI GTAC 4 cut(s) 73, 210, 538, 1057
RseI CAYNNNNRTG 3 cut(s) 194, 1918, 2367
SacI GAGCTC 2 cut(s) 23, 2134
Sau3AI GATC 9 cut(s) 186, 500, 1223, 1562, 1696, 1717, 1747, 1897, 2395
Sau96I GGNCC 8 cut(s) 85, 86, 465, 1410, 1832, 2071, 2086, 2329
ScaI AGTACT 1 cut(s) 211
SchI GAGTC 5 cut(s) 635, 955, 1312, 1814, 2003
ScrFI CCNGG 2 cut(s) 616, 1950
SduI GDGCHC 6 cut(s) 11, 23, 89, 246, 2134, 2406
SfaNI GCATC 8 cut(s) 477, 1030, 1144, 1264, 1600, 1667, 1960, 1991
SfcI CTRYAG 6 cut(s) 365, 545, 723, 1290, 1851, 2125
SfoI GGCGCC 1 cut(s) 100
SinI GGWCC 4 cut(s) 1832, 2071, 2086, 2329
SmiMI CAYNNNNRTG 3 cut(s) 194, 1918, 2367
SmlI CTYRAG 3 cut(s) 1394, 1435, 2222
SmoI CTYRAG 3 cut(s) 1394, 1435, 2222
SphI GCATGC 1 cut(s) 1683
SseBI AGGCCT 1 cut(s) 776
SspDI GGCGCC 1 cut(s) 98
SspI AATATT 4 cut(s) 223, 235, 412, 570
SspMI CTAG 6 cut(s) 444, 1299, 1443, 1893, 2034, 2333
SstI GAGCTC 2 cut(s) 23, 2134
StuI AGGCCT 1 cut(s) 776
StyD4I CCNGG 2 cut(s) 614, 1948
StyI CCWWGG 2 cut(s) 81, 1413
TaaI ACNGT 8 cut(s) 95, 214, 241, 549, 680, 1232, 2197, 2317
TaiI ACGT 2 cut(s) 592, 977
TaqI TCGA 5 cut(s) 17, 132, 335, 461, 1826
TatI WGTACW 1 cut(s) 209
TfiI GAWTC 6 cut(s) 620, 782, 811, 1514, 1553, 1627
TscAI CASTG 4 cut(s) 554, 685, 1284, 1992
TseFI GTSAC 1 cut(s) 2197
Tsp45I GTSAC 1 cut(s) 2197
TspDTI ATGAA 6 cut(s) 510, 839, 849, 1080, 1506, 2304
TspGWI ACGGA 1 cut(s) 784
TspRI CASTG 4 cut(s) 554, 685, 1284, 1992
Tth111I GACNNNGTC 1 cut(s) 2327
Vha464I CTTAAG 1 cut(s) 2222
VneI GTGCAC 1 cut(s) 242
VpaK11BI GGWCC 4 cut(s) 1832, 2071, 2086, 2329
XapI RAATTY 3 cut(s) 890, 1547, 2170
XceI RCATGY 3 cut(s) 1683, 1777, 2410
XmnI GAANNNNTTC 1 cut(s) 810
XspI CTAG 6 cut(s) 444, 1299, 1443, 1893, 2034, 2333
ZrmI AGTACT 1 cut(s) 211
Zsp2I ATGCAT 1 cut(s) 1660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.