Rh7CG383900
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000371
Physical Location & Seq
Reverse (-)
48439131 .. 48439427
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG383900.1

Sequence Viewer

Length: 297 bp
ATGGCTAACGTTCCGGTAGGTTTCTGGTTCCACCCGACTGAAGATGAGCTCATCCGGTACTACTTGTATATGAAGAACAAGGTGAGCGTGGGTGAAGATGACTCTGAAGCAGCAACGATGGTGGTGCCGGAGTTTGACCTCTACGGCAAGACCGAGCCCTGGAACATTTGGGTAGCTCACGGCGGAGCGGATCTGTACGACCAGGATTTGTTCTTCTTAAAAAAGCTGAAGAAGGTGAATCCCCATGGCACACGAATCAATCGAAAGATTAGGACGGGGACTTGGAGCAAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

98

Amino Acids

11.38

Weight (kDa)

6.83

Isoelectric Point (pI)

31.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 5 - 97 3e-15 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 124
AccBSI CCGCTC 1 cut(s) 188
AciI CCGC 2 cut(s) 183, 188
AclI AACGTT 1 cut(s) 9
AclWI GGATC 1 cut(s) 198
AcuI CTGAAG 3 cut(s) 60, 126, 248
AfaI GTAC 2 cut(s) 59, 197
AfiI CCNNNNNNNGG 1 cut(s) 159
AjnI CCWGG 2 cut(s) 158, 201
AluBI AGCT 3 cut(s) 49, 176, 226
AluI AGCT 3 cut(s) 49, 176, 226
Alw21I GWGCWC 1 cut(s) 51
AlwI GGATC 1 cut(s) 198
ApeKI GCWGC 1 cut(s) 110
AsuHPI GGTGA 3 cut(s) 94, 104, 247
BanI GGYRCC 1 cut(s) 124
BanII GRGCYC 2 cut(s) 51, 159
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 122
BccI CCATC 1 cut(s) 112
BceAI ACGGC 2 cut(s) 160, 196
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciT130I CCWGG 2 cut(s) 160, 203
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 2 cut(s) 160, 203
BmiI GGNNCC 2 cut(s) 29, 126
BmrFI CCNGG 2 cut(s) 160, 203
BsaJI CCNNGG 2 cut(s) 158, 244
BsaWI WCCGGW 2 cut(s) 13, 54
Bsc4I CCNNNNNNNGG 1 cut(s) 159
BseBI CCWGG 2 cut(s) 160, 203
BseDI CCNNGG 2 cut(s) 158, 244
BseGI GGATG 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 122
BshNI GGYRCC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 3 cut(s) 14, 55, 128
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 292
Bsp1286I GDGCHC 2 cut(s) 51, 159
Bsp143I GATC 1 cut(s) 190
Bsp19I CCATGG 1 cut(s) 244
BspACI CCGC 2 cut(s) 183, 188
BspLI GGNNCC 2 cut(s) 29, 126
BspPI GGATC 1 cut(s) 198
BspT107I GGYRCC 1 cut(s) 124
BsrBI CCGCTC 1 cut(s) 188
BssECI CCNNGG 2 cut(s) 158, 244
BssMI GATC 1 cut(s) 190
BssT1I CCWWGG 1 cut(s) 244
Bst2UI CCWGG 2 cut(s) 160, 203
BstDSI CCRYGG 1 cut(s) 244
BstF5I GGATG 1 cut(s) 51
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstNI CCWGG 2 cut(s) 160, 203
BstSCI CCNGG 2 cut(s) 158, 201
BstV1I GCAGC 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BtgI CCRYGG 1 cut(s) 244
BtsCI GGATG 1 cut(s) 51
Csp6I GTAC 2 cut(s) 58, 196
CspCI CAANNNNNGTGG 2 cut(s) 102, 137
CviAII CATG 1 cut(s) 245
CviJI RGCY 6 cut(s) 5, 49, 157, 176, 226, 294
CviKI_1 RGCY 6 cut(s) 5, 49, 157, 176, 226, 294
CviQI GTAC 2 cut(s) 58, 196
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
EciI GGCGGA 1 cut(s) 198
Ecl136II GAGCTC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 2 cut(s) 51, 159
Eco53kI GAGCTC 1 cut(s) 49
Eco57I CTGAAG 3 cut(s) 60, 126, 248
EcoICRI GAGCTC 1 cut(s) 49
EcoRII CCWGG 2 cut(s) 158, 201
EcoT14I CCWWGG 1 cut(s) 244
EcoT38I GRGCYC 2 cut(s) 51, 159
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 1 cut(s) 248
FaiI YATR 3 cut(s) 69, 71, 246
FaqI GGGAC 1 cut(s) 292
FatI CATG 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 38
FriOI GRGCYC 2 cut(s) 51, 159
Fsp4HI GCNGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 111
HapII CCGG 3 cut(s) 14, 55, 128
Hin1II CATG 1 cut(s) 248
HinfI GANTC 3 cut(s) 101, 238, 255
HpaII CCGG 3 cut(s) 14, 55, 128
HphI GGTGA 3 cut(s) 94, 104, 247
Hpy188I TCNGA 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 9
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 1 cut(s) 248
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 2 cut(s) 185, 285
LpnPI CCDG 8 cut(s) 10, 27, 68, 141, 145, 172, 188, 215
Lsp1109I GCAGC 1 cut(s) 122
MaeII ACGT 1 cut(s) 9
MalI GATC 1 cut(s) 192
MbiI CCGCTC 1 cut(s) 188
MboI GATC 1 cut(s) 190
MboII GAAGA 5 cut(s) 53, 85, 107, 205, 241
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 2 cut(s) 51, 159
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 1 cut(s) 149
MseI TTAA 1 cut(s) 218
MspI CCGG 3 cut(s) 14, 55, 128
MspR9I CCNGG 2 cut(s) 160, 203
MvaI CCWGG 2 cut(s) 160, 203
NcoI CCATGG 1 cut(s) 244
NdeII GATC 1 cut(s) 190
NlaIII CATG 1 cut(s) 248
NlaIV GGNNCC 2 cut(s) 29, 126
PcsI WCGNNNNNNNCGW 2 cut(s) 150, 259
PfeI GAWTC 2 cut(s) 238, 255
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
Psp124BI GAGCTC 1 cut(s) 51
Psp1406I AACGTT 1 cut(s) 9
Psp6I CCWGG 2 cut(s) 158, 201
PspGI CCWGG 2 cut(s) 158, 201
PspN4I GGNNCC 2 cut(s) 29, 126
PsuI RGATCY 1 cut(s) 190
RsaI GTAC 2 cut(s) 59, 197
RsaNI GTAC 2 cut(s) 58, 196
SacI GAGCTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 190
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 160, 203
SduI GDGCHC 2 cut(s) 51, 159
SetI ASST 8 cut(s) 12, 22, 51, 84, 141, 178, 228, 237
SsiI CCGC 2 cut(s) 183, 188
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 2 cut(s) 158, 201
StyI CCWWGG 1 cut(s) 244
TaiI ACGT 1 cut(s) 12
TaqI TCGA 1 cut(s) 262
TaqII GACCGA 1 cut(s) 167
TfiI GAWTC 2 cut(s) 238, 255
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.