Prupe.8G097100_v2.0.a1
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000371
Physical Location & Seq
Forward (+)
12910103 .. 12910996
894 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G097100.1

Sequence Viewer

Length: 894 bp
ATGGCACATCATCAGAACGTGCCGTTAGGTTTCCGTTTCCACCCCACTGATAAAGAGATTGTGGGTTCCTTTCTCCACACCTTGTTGGTCGACAGAAATCCTTTGATCCCGCCGTACAGCAACTTCATCCGTGCCTGCAATCTCTTCGGCAACAAGTTAGAGCCTTCGGAGATTTGGAACAAGTACGGAGGGCCTCAACTTGTTGATCAAGACTTGTATTTCCTTTCCGGGCTCAAGAAGTTAACCCCGAAGCGCATGGATCGTAGCATTGGCCACGGCGGTACGTGGAGTGAAACTGAATCCTTCAAACTTATTGAGTACGATAATGGAAACCCGAACCCCATTGGCCGAAAACGAAAATTCCGCTATGAGAATAAAGGGTCCGAGGAGCACACATGGTGGTTACTGGATGAATATAGTCTTTTTGTTGGTCCCAAGAATGACTACAATGATCGTAGTTACGATTTCGATTTCGTGATTTGTCGAATGAGGAAGAACGATAGGGCCTTGAGTAAGGAAATAAATTTAAAGCGTTCATCACAAGATCAAGTACAAAAAAAGAGGAGCACAAACAAAAAGATGAAAAAAGATCATCAAATGGGATCAACGGAAGAATCATCATCACTTGTACAACAAGGCTACTCTTCTAGTATAACTGGTGGTGAACTTGTGGTCTCTTATGATGATGTTGATCCGAATGATCTGACATTCTTCGAGAACAATCCTATCTTCAACATTGAACAAATACTTTGTGAAACCAAAGTAGAGAATCCTTGCAGCCCAAGTAACTTTGAGAATGTCAACAGCAGCTACTCTAAATGGACTGAATCATATATGGAAGAGCTCATGGCTTGTATCGAAGATATTAATTGTACAAGTGATAGCTGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

298

Amino Acids

34.4

Weight (kDa)

5.73

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 90
AciI CCGC 3 cut(s) 110, 279, 364
AclWI GGATC 4 cut(s) 100, 267, 610, 686
AcoI YGGCCR 2 cut(s) 271, 346
AcsI RAATTY 2 cut(s) 359, 523
AdeI CACNNNGTG 1 cut(s) 399
AfaI GTAC 7 cut(s) 116, 185, 283, 320, 552, 630, 874
AgsI TTSAA 3 cut(s) 307, 733, 740
AluBI AGCT 3 cut(s) 810, 844, 885
AluI AGCT 3 cut(s) 810, 844, 885
Alw21I GWGCWC 3 cut(s) 393, 569, 846
Alw26I GTCTC 1 cut(s) 679
AlwI GGATC 4 cut(s) 100, 267, 610, 686
AoxI GGCC 4 cut(s) 191, 271, 346, 504
ApeKI GCWGC 2 cut(s) 777, 807
ApoI RAATTY 2 cut(s) 359, 523
AseI ATTAAT 1 cut(s) 867
AspLEI GCGC 1 cut(s) 255
AspS9I GGNCC 4 cut(s) 191, 381, 431, 504
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 674
AvaII GGWCC 2 cut(s) 381, 431
BalI TGGCCA 1 cut(s) 273
BanII GRGCYC 2 cut(s) 234, 846
BarI GAAGNNNNNNTAC 2 cut(s) 107, 139
Bbv12I GWGCWC 3 cut(s) 393, 569, 846
BbvI GCAGC 2 cut(s) 789, 819
BceAI ACGGC 3 cut(s) 7, 97, 292
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BclI TGATCA 1 cut(s) 205
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 679
BfaI CTAG 1 cut(s) 648
BfmI CTRYAG 1 cut(s) 886
BisI GCNGC 2 cut(s) 778, 808
BlsI GCNGC 2 cut(s) 779, 809
Bme1390I CCNGG 1 cut(s) 229
Bme18I GGWCC 2 cut(s) 381, 431
BmgT120I GGNCC 4 cut(s) 191, 381, 431, 504
BmiI GGNNCC 3 cut(s) 67, 382, 433
BmrFI CCNGG 1 cut(s) 229
BpuEI CTTGAG 2 cut(s) 218, 529
BpuMI CCSGG 1 cut(s) 229
BsaAI YACGTR 1 cut(s) 285
BsaBI GATNNNNATC 1 cut(s) 690
BsaI GGTCTC 1 cut(s) 679
BsaJI CCNNGG 2 cut(s) 274, 384
Bse1I ACTGG 2 cut(s) 411, 661
Bse8I GATNNNNATC 1 cut(s) 690
BseDI CCNNGG 2 cut(s) 274, 384
BseGI GGATG 2 cut(s) 126, 415
BseJI GATNNNNATC 1 cut(s) 690
BseNI ACTGG 2 cut(s) 411, 661
BseRI GAGGAG 2 cut(s) 401, 577
BseXI GCAGC 2 cut(s) 789, 819
BshFI GGCC 4 cut(s) 193, 273, 348, 506
BsiHKAI GWGCWC 3 cut(s) 393, 569, 846
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 1 cut(s) 417
BsmAI GTCTC 1 cut(s) 679
BsmFI GGGAC 1 cut(s) 417
BsnI GGCC 4 cut(s) 193, 273, 348, 506
Bso31I GGTCTC 1 cut(s) 679
Bsp1286I GDGCHC 4 cut(s) 234, 393, 569, 846
Bsp1407I TGTACA 2 cut(s) 628, 872
Bsp143I GATC 9 cut(s) 105, 205, 259, 451, 544, 589, 602, 691, 700
BspACI CCGC 3 cut(s) 110, 279, 364
BspANI GGCC 4 cut(s) 193, 273, 348, 506
BspLI GGNNCC 3 cut(s) 67, 382, 433
BspPI GGATC 4 cut(s) 100, 267, 610, 686
BspQI GCTCTTC 1 cut(s) 834
BspTNI GGTCTC 1 cut(s) 679
BsrGI TGTACA 2 cut(s) 628, 872
BsrI ACTGG 2 cut(s) 411, 661
BssECI CCNNGG 2 cut(s) 274, 384
BssMI GATC 9 cut(s) 105, 205, 259, 451, 544, 589, 602, 691, 700
Bst6I CTCTTC 3 cut(s) 149, 649, 834
BstAUI TGTACA 2 cut(s) 628, 872
BstBAI YACGTR 1 cut(s) 285
BstC8I GCNNGC 1 cut(s) 136
BstDSI CCRYGG 1 cut(s) 274
BstF5I GGATG 2 cut(s) 126, 415
BstHHI GCGC 1 cut(s) 255
BstKTI GATC 9 cut(s) 108, 208, 262, 454, 547, 592, 605, 694, 703
BstMAI GTCTC 1 cut(s) 679
BstMBI GATC 9 cut(s) 105, 205, 259, 451, 544, 589, 602, 691, 700
BstSCI CCNGG 1 cut(s) 227
BstSFI CTRYAG 1 cut(s) 886
BstV1I GCAGC 2 cut(s) 789, 819
BsuRI GGCC 4 cut(s) 193, 273, 348, 506
BtgI CCRYGG 1 cut(s) 274
BtsCI GGATG 2 cut(s) 126, 415
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 1 cut(s) 136
CfoI GCGC 1 cut(s) 255
Cfr13I GGNCC 4 cut(s) 191, 381, 431, 504
Csp6I GTAC 7 cut(s) 115, 184, 282, 319, 551, 629, 873
CviAII CATG 3 cut(s) 256, 396, 847
CviQI GTAC 7 cut(s) 115, 184, 282, 319, 551, 629, 873
DpnI GATC 9 cut(s) 107, 207, 261, 453, 546, 591, 604, 693, 702
DpnII GATC 9 cut(s) 105, 205, 259, 451, 544, 589, 602, 691, 700
DraI TTTAAA 1 cut(s) 528
DraIII CACNNNGTG 1 cut(s) 399
EaeI YGGCCR 2 cut(s) 271, 346
Eam1104I CTCTTC 3 cut(s) 149, 649, 834
EarI CTCTTC 3 cut(s) 149, 649, 834
Ecl136II GAGCTC 1 cut(s) 844
Eco24I GRGCYC 2 cut(s) 234, 846
Eco31I GGTCTC 1 cut(s) 679
Eco47I GGWCC 2 cut(s) 381, 431
Eco53kI GAGCTC 1 cut(s) 844
EcoICRI GAGCTC 1 cut(s) 844
EcoO109I RGGNCCY 2 cut(s) 191, 504
EcoT38I GRGCYC 2 cut(s) 234, 846
FaeI CATG 3 cut(s) 259, 399, 850
FaqI GGGAC 1 cut(s) 417
FatI CATG 3 cut(s) 255, 395, 846
FauI CCCGC 1 cut(s) 117
FbaI TGATCA 1 cut(s) 205
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 778, 808
FokI GGATG 2 cut(s) 113, 422
FriOI GRGCYC 2 cut(s) 234, 846
Fsp4HI GCNGC 2 cut(s) 778, 808
FspBI CTAG 1 cut(s) 648
GlaI GCGC 1 cut(s) 254
GluI GCNGC 2 cut(s) 778, 808
HaeIII GGCC 4 cut(s) 193, 273, 348, 506
HapII CCGG 1 cut(s) 228
HhaI GCGC 1 cut(s) 255
Hin1II CATG 3 cut(s) 259, 399, 850
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
HincII GTYRAC 3 cut(s) 91, 243, 802
HindII GTYRAC 3 cut(s) 91, 243, 802
HinfI GANTC 4 cut(s) 299, 614, 769, 827
HpaI GTTAAC 1 cut(s) 243
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 674
Hpy166II GTNNAC 4 cut(s) 91, 243, 665, 802
Hpy188I TCNGA 5 cut(s) 15, 169, 385, 696, 705
Hpy188III TCNNGA 4 cut(s) 209, 235, 475, 715
Hpy8I GTNNAC 4 cut(s) 91, 243, 665, 802
HpyAV CCTTC 2 cut(s) 174, 313
HpyCH4IV ACGT 2 cut(s) 18, 284
HpyCH4V TGCA 2 cut(s) 138, 777
HpySE526I ACGT 2 cut(s) 18, 284
Hsp92II CATG 3 cut(s) 259, 399, 850
HspAI GCGC 1 cut(s) 253
Ksp22I TGATCA 1 cut(s) 205
KspAI GTTAAC 1 cut(s) 243
Kzo9I GATC 9 cut(s) 105, 205, 259, 451, 544, 589, 602, 691, 700
LguI GCTCTTC 1 cut(s) 834
LmnI GCTCC 2 cut(s) 388, 564
LpnPI CCDG 4 cut(s) 148, 241, 392, 642
Lsp1109I GCAGC 2 cut(s) 789, 819
MaeI CTAG 1 cut(s) 648
MaeII ACGT 2 cut(s) 18, 284
MaeIII GTNAC 3 cut(s) 402, 458, 785
MalI GATC 9 cut(s) 107, 207, 261, 453, 546, 591, 604, 693, 702
MboI GATC 9 cut(s) 105, 205, 259, 451, 544, 589, 602, 691, 700
MboII GAAGA 8 cut(s) 136, 505, 623, 636, 703, 721, 851, 872
MhlI GDGCHC 4 cut(s) 234, 393, 569, 846
MlsI TGGCCA 1 cut(s) 273
MluCI AATT 3 cut(s) 359, 523, 868
MluNI TGGCCA 1 cut(s) 273
MnlI CCTC 5 cut(s) 182, 204, 379, 483, 555
Mox20I TGGCCA 1 cut(s) 273
MscI TGGCCA 1 cut(s) 273
MseI TTAA 3 cut(s) 242, 527, 867
Msp20I TGGCCA 1 cut(s) 273
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 229
NciI CCSGG 1 cut(s) 229
NdeII GATC 9 cut(s) 105, 205, 259, 451, 544, 589, 602, 691, 700
NlaIII CATG 3 cut(s) 259, 399, 850
NlaIV GGNNCC 3 cut(s) 67, 382, 433
PciSI GCTCTTC 1 cut(s) 834
PfeI GAWTC 4 cut(s) 299, 614, 769, 827
PkrI GCNGC 2 cut(s) 779, 809
Ppu21I YACGTR 1 cut(s) 285
PshBI ATTAAT 1 cut(s) 867
Psp124BI GAGCTC 1 cut(s) 846
PspN4I GGNNCC 3 cut(s) 67, 382, 433
PspPI GGNCC 4 cut(s) 191, 381, 431, 504
RsaI GTAC 7 cut(s) 116, 185, 283, 320, 552, 630, 874
RsaNI GTAC 7 cut(s) 115, 184, 282, 319, 551, 629, 873
SacI GAGCTC 1 cut(s) 846
SalI GTCGAC 1 cut(s) 89
SapI GCTCTTC 1 cut(s) 834
SaqAI TTAA 3 cut(s) 242, 527, 867
SatI GCNGC 2 cut(s) 778, 808
Sau3AI GATC 9 cut(s) 105, 205, 259, 451, 544, 589, 602, 691, 700
Sau96I GGNCC 4 cut(s) 191, 381, 431, 504
ScrFI CCNGG 1 cut(s) 229
SduI GDGCHC 4 cut(s) 234, 393, 569, 846
SetI ASST 7 cut(s) 21, 31, 83, 287, 812, 846, 887
SfcI CTRYAG 1 cut(s) 886
SinI GGWCC 2 cut(s) 381, 431
SmlI CTYRAG 2 cut(s) 233, 508
SmoI CTYRAG 2 cut(s) 233, 508
Sse9I AATT 3 cut(s) 359, 523, 868
SsiI CCGC 3 cut(s) 110, 279, 364
SspMI CTAG 1 cut(s) 648
SstI GAGCTC 1 cut(s) 846
StyD4I CCNGG 1 cut(s) 227
TaiI ACGT 2 cut(s) 21, 287
TaqI TCGA 5 cut(s) 90, 468, 484, 714, 858
TasI AATT 3 cut(s) 359, 523, 868
TatI WGTACW 3 cut(s) 550, 628, 872
TfiI GAWTC 4 cut(s) 299, 614, 769, 827
Tru1I TTAA 3 cut(s) 242, 527, 867
Tru9I TTAA 3 cut(s) 242, 527, 867
TscAI CASTG 1 cut(s) 52
TseI GCWGC 2 cut(s) 777, 807
TspDTI ATGAA 4 cut(s) 115, 426, 525, 596
TspGWI ACGGA 4 cut(s) 23, 119, 201, 623
TspRI CASTG 1 cut(s) 52
VpaK11BI GGWCC 2 cut(s) 381, 431
VspI ATTAAT 1 cut(s) 867
XapI RAATTY 2 cut(s) 359, 523
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.