Prupe.6G092100_v2.0.a1
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000371
Physical Location & Seq
Forward (+)
6347818 .. 6348948
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G092100.1

Sequence Viewer

Length: 1131 bp
ATGACGCAGCTGCTCGGCTTCAGGTTCGACCCCACGGACCAAGAAATTATCGGCTTCTTTCTCTACAAGGTGGTGGTGGCGAACAACCCTCTGACTTTGATGCCGCCATACAACAAGGTTATCTACAAGTGCAACCTCTTCGGCAACAAACGAGAACCCTCAGAAATTTGGAGAGATTACGGAGGGGATCAACTTGACGATCAAGACTTGTACTTCGTTTCCGAGCTCCAGAGAAACGGTTTGCGCACCCAACGCAAGACTGGCAGCTGCGGTACTTGGAGTGAAACCGAAACCTACCAAGATGTTAAAGATGAGGTGGATGAGATTATAGGTAGAAAACGGAAATTCCGGTACGAGAACGGCAATACTTCGGAGGACCACGCCGGCTGGCTTTTGGATGAATATAGCCTTTTCGAAAAGGGCTGCAAGAATCGCACAAGTCGTAATTGCTATGATTTTGACGTTGTGATTTGTCGGCTGAGAAGGAAGTGCAATATGAACAAGTCCGGGAAAAAGAGGAAGTGCTCATCTCGAGATCAATCAAACAAGAAGATGAAAAGAGATCAATCTACGAAGGAGACGAAGACTGAAAATTCAGTGGGGCCGCAAATTATGAATGATGAGAGCAATCAGTTGATGATCAACGACATTACCACTTGTGATCAAGATTATTTGATCGACACCAATCATAAAAGTTTCAACATTGATGAACTCTTCGTAGAACTAGACCGCGAACCGCCATTGTTACACTCGCAGCAACTACCTCAGATTGTTGAAAGCCAAGAAAAGCCTTTGCCAACTTCTTGCCTCTGTGTTAATCAATTTGATGGAGCACTGGAAGCAGCCGCCAGCAATCTGAGTAATTTTGAGTATAATAGCGAACTAGCAAGATCAACGTGGCAACATAATATGAATGCCGATGATCATCAAGATCCGAATTTAATCTTCACCGTCGATGAATTATTGGCAGAAGATGCAGAACCTTTGTCAACTTATGCGCTTGATGATGTTTATAATGTGGTCAGCCAACCATTAGACCAAAACAGTTGTTGGTCCAAATCCTTTATGGATCAGACTTACAATTCCTATATATACTCATCAATAGAGGAGGAGATCATAGCTGACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

377

Amino Acids

43.6

Weight (kDa)

4.72

Isoelectric Point (pI)

49.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1014
Acc16I TGCGCA 1 cut(s) 245
AccII CGCG 1 cut(s) 732
AciI CCGC 6 cut(s) 104, 270, 605, 730, 737, 846
AclWI GGATC 3 cut(s) 195, 926, 1077
AcsI RAATTY 4 cut(s) 165, 344, 592, 937
AcuI CTGAAG 1 cut(s) 4
AfaI GTAC 3 cut(s) 212, 274, 353
AgsI TTSAA 2 cut(s) 700, 776
AluBI AGCT 4 cut(s) 10, 226, 267, 1121
AluI AGCT 4 cut(s) 10, 226, 267, 1121
Alw21I GWGCWC 3 cut(s) 228, 527, 835
Alw26I GTCTC 1 cut(s) 572
AlwI GGATC 3 cut(s) 195, 926, 1077
Ama87I CYCGRG 1 cut(s) 531
AoxI GGCC 1 cut(s) 602
ApeKI GCWGC 7 cut(s) 7, 10, 264, 267, 423, 754, 842
ApoI RAATTY 4 cut(s) 165, 344, 592, 937
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
AspLEI GCGC 2 cut(s) 246, 1000
AspS9I GGNCC 4 cut(s) 37, 376, 602, 1053
AsuC2I CCSGG 1 cut(s) 508
AsuHPI GGTGA 1 cut(s) 940
AsuII TTCGAA 1 cut(s) 414
AvaI CYCGRG 1 cut(s) 531
AvaII GGWCC 3 cut(s) 37, 376, 1053
BanII GRGCYC 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 590
Bbv12I GWGCWC 3 cut(s) 228, 527, 835
BbvI GCAGC 6 cut(s) 19, 254, 276, 410, 766, 854
BccI CCATC 1 cut(s) 821
BceAI ACGGC 1 cut(s) 376
BcgI CGANNNNNNTGC 2 cut(s) 121, 155
BclI TGATCA 3 cut(s) 639, 661, 922
BcnI CCSGG 1 cut(s) 508
BcoDI GTCTC 1 cut(s) 572
BfaI CTAG 2 cut(s) 725, 884
Bme1390I CCNGG 1 cut(s) 508
Bme18I GGWCC 3 cut(s) 37, 376, 1053
BmeT110I CYCGRG 1 cut(s) 531
BmgT120I GGNCC 4 cut(s) 37, 376, 602, 1053
BmiI GGNNCC 1 cut(s) 603
BmrFI CCNGG 1 cut(s) 508
BmsI GCATC 2 cut(s) 90, 964
BpiI GAAGAC 1 cut(s) 590
BpmI CTGGAG 1 cut(s) 212
Bpu14I TTCGAA 1 cut(s) 414
BpuMI CCSGG 1 cut(s) 508
BsaBI GATNNNNATC 1 cut(s) 924
BsaJI CCNNGG 1 cut(s) 33
BsaWI WCCGGW 1 cut(s) 348
Bse118I RCCGGY 1 cut(s) 383
Bse1I ACTGG 2 cut(s) 265, 840
Bse8I GATNNNNATC 1 cut(s) 924
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 2 cut(s) 325, 403
BseJI GATNNNNATC 1 cut(s) 924
BseMII CTCAG 4 cut(s) 174, 470, 779, 848
BseNI ACTGG 2 cut(s) 265, 840
BseRI GAGGAG 2 cut(s) 1121, 1124
BseXI GCAGC 6 cut(s) 19, 254, 276, 410, 766, 854
Bsh1236I CGCG 1 cut(s) 732
BshFI GGCC 1 cut(s) 604
BsiHKAI GWGCWC 3 cut(s) 228, 527, 835
BsiHKCI CYCGRG 1 cut(s) 531
BsiSI CCGG 3 cut(s) 349, 384, 507
BsmAI GTCTC 1 cut(s) 572
BsmBI CGTCTC 1 cut(s) 572
BsmI GAATGC 1 cut(s) 919
BsnI GGCC 1 cut(s) 604
BsoBI CYCGRG 1 cut(s) 531
Bsp119I TTCGAA 1 cut(s) 414
Bsp1286I GDGCHC 3 cut(s) 228, 527, 835
BspACI CCGC 6 cut(s) 104, 270, 605, 730, 737, 846
BspANI GGCC 1 cut(s) 604
BspCNI CTCAG 4 cut(s) 173, 471, 778, 849
BspFNI CGCG 1 cut(s) 732
BspLI GGNNCC 1 cut(s) 603
BspPI GGATC 3 cut(s) 195, 926, 1077
BspT104I TTCGAA 1 cut(s) 414
BsrFI RCCGGY 1 cut(s) 383
BsrI ACTGG 2 cut(s) 265, 840
BssAI RCCGGY 1 cut(s) 383
BssECI CCNNGG 1 cut(s) 33
Bst4CI ACNGT 3 cut(s) 239, 952, 1046
Bst6I CTCTTC 2 cut(s) 143, 719
BstAPI GCANNNNNTGC 1 cut(s) 974
BstBI TTCGAA 1 cut(s) 414
BstC8I GCNNGC 3 cut(s) 385, 389, 850
BstDEI CTNAG 4 cut(s) 160, 479, 765, 857
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 325, 403
BstFNI CGCG 1 cut(s) 732
BstHHI GCGC 2 cut(s) 246, 1000
BstMAI GTCTC 1 cut(s) 572
BstMWI GCNNNNNNNGC 5 cut(s) 252, 261, 432, 839, 974
BstSCI CCNGG 1 cut(s) 506
BstUI CGCG 1 cut(s) 732
BstV1I GCAGC 6 cut(s) 19, 254, 276, 410, 766, 854
BstV2I GAAGAC 1 cut(s) 590
BstX2I RGATCY 1 cut(s) 931
BstYI RGATCY 1 cut(s) 931
BsuRI GGCC 1 cut(s) 604
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 2 cut(s) 325, 403
BtsIMutI CAGTG 2 cut(s) 603, 833
Cac8I GCNNGC 3 cut(s) 385, 389, 850
CfoI GCGC 2 cut(s) 246, 1000
Cfr10I RCCGGY 1 cut(s) 383
Cfr13I GGNCC 4 cut(s) 37, 376, 602, 1053
CseI GACGC 1 cut(s) 13
Csp6I GTAC 3 cut(s) 211, 273, 352
CviQI GTAC 3 cut(s) 211, 273, 352
DdeI CTNAG 4 cut(s) 160, 479, 765, 857
Eam1104I CTCTTC 2 cut(s) 143, 719
EarI CTCTTC 2 cut(s) 143, 719
Ecl136II GAGCTC 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 3 cut(s) 37, 376, 1053
Eco53kI GAGCTC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 4
Eco88I CYCGRG 1 cut(s) 531
EcoICRI GAGCTC 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 572
FbaI TGATCA 3 cut(s) 639, 661, 922
FokI GGATG 2 cut(s) 332, 410
FriOI GRGCYC 1 cut(s) 228
FspBI CTAG 2 cut(s) 725, 884
FspI TGCGCA 1 cut(s) 245
GlaI GCGC 2 cut(s) 245, 999
GsuI CTGGAG 1 cut(s) 212
HaeIII GGCC 1 cut(s) 604
HapII CCGG 3 cut(s) 349, 384, 507
HgaI GACGC 1 cut(s) 13
HhaI GCGC 2 cut(s) 246, 1000
Hin6I GCGC 2 cut(s) 244, 998
HinP1I GCGC 2 cut(s) 244, 998
HincII GTYRAC 1 cut(s) 990
HindII GTYRAC 1 cut(s) 990
HinfI GANTC 1 cut(s) 430
HpaII CCGG 3 cut(s) 349, 384, 507
HphI GGTGA 1 cut(s) 940
Hpy166II GTNNAC 1 cut(s) 990
Hpy188I TCNGA 8 cut(s) 93, 163, 223, 373, 768, 858, 936, 1074
Hpy188III TCNNGA 6 cut(s) 203, 229, 531, 533, 665, 929
Hpy8I GTNNAC 1 cut(s) 990
Hpy99I CGWCG 1 cut(s) 956
HpyAV CCTTC 2 cut(s) 477, 568
HpyCH4III ACNGT 3 cut(s) 239, 952, 1046
HpyCH4IV ACGT 2 cut(s) 462, 896
HpyCH4V TGCA 4 cut(s) 132, 426, 492, 977
HpyF10VI GCNNNNNNNGC 5 cut(s) 252, 261, 432, 839, 974
HpyF3I CTNAG 4 cut(s) 160, 479, 765, 857
HpySE526I ACGT 2 cut(s) 462, 896
HspAI GCGC 2 cut(s) 244, 998
KroI GCCGGC 1 cut(s) 383
KroNI GCCGGC 1 cut(s) 385
Ksp22I TGATCA 3 cut(s) 639, 661, 922
LmnI GCTCC 2 cut(s) 231, 830
LpnPI CCDG 9 cut(s) 7, 242, 246, 362, 373, 397, 520, 821, 862
Lsp1109I GCAGC 6 cut(s) 19, 254, 276, 410, 766, 854
LweI GCATC 2 cut(s) 90, 964
MaeI CTAG 2 cut(s) 725, 884
MaeII ACGT 2 cut(s) 462, 896
MaeIII GTNAC 1 cut(s) 744
MboII GAAGA 6 cut(s) 130, 562, 595, 706, 937, 983
MflI RGATCY 1 cut(s) 931
MhlI GDGCHC 3 cut(s) 228, 527, 835
MroNI GCCGGC 1 cut(s) 383
MseI TTAA 3 cut(s) 306, 816, 941
MspA1I CMGCKG 2 cut(s) 10, 267
MspI CCGG 3 cut(s) 349, 384, 507
MspR9I CCNGG 1 cut(s) 508
Mva1269I GAATGC 1 cut(s) 919
MvnI CGCG 1 cut(s) 732
MwoI GCNNNNNNNGC 5 cut(s) 252, 261, 432, 839, 974
NaeI GCCGGC 1 cut(s) 385
NciI CCSGG 1 cut(s) 508
NgoMIV GCCGGC 1 cut(s) 383
NlaIV GGNNCC 1 cut(s) 603
NsbI TGCGCA 1 cut(s) 245
NspV TTCGAA 1 cut(s) 414
PaeR7I CTCGAG 1 cut(s) 531
PcsI WCGNNNNNNNCGW 2 cut(s) 439, 578
PctI GAATGC 1 cut(s) 919
PdiI GCCGGC 1 cut(s) 385
PfeI GAWTC 1 cut(s) 430
PfoI TCCNGGA 1 cut(s) 506
PsiI TTATAA 1 cut(s) 1014
Psp124BI GAGCTC 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 603
PspPI GGNCC 4 cut(s) 37, 376, 602, 1053
PsuI RGATCY 1 cut(s) 931
PvuII CAGCTG 2 cut(s) 10, 267
RsaI GTAC 3 cut(s) 212, 274, 353
RsaNI GTAC 3 cut(s) 211, 273, 352
SacI GAGCTC 1 cut(s) 228
SaqAI TTAA 3 cut(s) 306, 816, 941
Sau96I GGNCC 4 cut(s) 37, 376, 602, 1053
ScrFI CCNGG 1 cut(s) 508
SduI GDGCHC 3 cut(s) 228, 527, 835
SfaNI GCATC 2 cut(s) 90, 964
Sfr274I CTCGAG 1 cut(s) 531
SfuI TTCGAA 1 cut(s) 414
SinI GGWCC 3 cut(s) 37, 376, 1053
SlaI CTCGAG 1 cut(s) 531
SmlI CTYRAG 1 cut(s) 531
SmoI CTYRAG 1 cut(s) 531
SsiI CCGC 6 cut(s) 104, 270, 605, 730, 737, 846
SspMI CTAG 2 cut(s) 725, 884
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 506
TaaI ACNGT 3 cut(s) 239, 952, 1046
TaiI ACGT 2 cut(s) 465, 899
TaqI TCGA 5 cut(s) 27, 414, 532, 678, 954
TatI WGTACW 1 cut(s) 210
TauI GCSGC 3 cut(s) 106, 607, 848
TfiI GAWTC 1 cut(s) 430
Tru1I TTAA 3 cut(s) 306, 816, 941
Tru9I TTAA 3 cut(s) 306, 816, 941
TscAI CASTG 2 cut(s) 603, 840
TseI GCWGC 7 cut(s) 7, 10, 264, 267, 423, 754, 842
TspDTI ATGAA 7 cut(s) 414, 512, 569, 629, 723, 926, 972
TspGWI ACGGA 3 cut(s) 50, 195, 355
TspRI CASTG 2 cut(s) 603, 840
VpaK11BI GGWCC 3 cut(s) 37, 376, 1053
XapI RAATTY 4 cut(s) 165, 344, 592, 937
XcmI CCANNNNNNNNNTGG 2 cut(s) 257, 1063
XhoI CTCGAG 1 cut(s) 531
XspI CTAG 2 cut(s) 725, 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.