Rw7G037330
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000371
Physical Location & Seq
Reverse (-)
56705264 .. 56725897
20634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G037330.1

Sequence Viewer

Length: 1296 bp
ATGGATTGTTGTTTTCCGGCGGGTGTCAGATTCCACCCGACTGATGAAGAATTGATCGGCCACTATCTCTACCTGAAGAATTATCCCAAGTCGGCCTCGGCAGCACCATCCTTGCTTCTTCCTGAGTTTGATTTATACAGTGAGGCCGAACCCTGGATCATTTGGGAAGCCTATGGAGGACCTAATCTGAAACAACAAGATCTTTTTTTTTTTATACACCCCATAAGAAGAAGGCCAATCCCCGGTTGGATTGTCGGGCACTGGAGCCAAGGTGAACCGTCCAAACCCATTTTTGGTGAGCAGAACCAGGAAACCCAAATTGGGCGAAAGACAAAATTGAGGTATGAGAACAAACTGGTGTTGGAACAACACGGTTGTTGGATTATGGAGGAATATAGCGTTGTTGATGATCACTCCACAATAAGAAATAATAATGATAGCAAGAGGAAGTCTCAAGATGATGATGATGATCATCACCCAAAGCCTAGGAAAAAGCCCAAGTCTTTGACAGTTGCTGATCCACAACCTGCTTTTACAACCAGTGAGGATAGAAAGACTCAGCAATTTGATACTGTGGAAATGTTATATGATGAGCTGTTTGGCAATGATGATGATCAGATGGTTGCTCATGATCAGGAATATGAGACTCAGCATTTGATGTTAGAGGGTACTACTGATGACCACATTGACTATGCATTGGAGGTAGTAGAAGGGGATACACTAGCCCCTACCCTCTCAGAACAACACACATGTTCATCATTAATTGTGCAGCCCAGTCCTACCAAAGAAGATACATATACAGTACCTCATATTGGTTCAGACTTACACCAACTAGGAGACCAAAATGAGTTGATTACTAGTGAGGCACAAAGCAGTACAAGTATTGGTATTGGCATGTCTGAGGATACTGACTGGCTTGATCTTGCATTAGAAGAAGTAGAAAGGGAGACAATATCCCCTTCACCCTCAGAACAACAAATGTCATTGACTTCACATATGCTGGCCAATCCTTCCAAAGAAAATACATATAAAGTACCACTTGTACCTCATATTGGTTCAAAATGGCAACAACCAACAAATCAAAATGGGTTGGTTGAGGCACAAGGCAGTAGTGAAGATAATGAATTTAGTTTTGCCTTTGATGATATCATTATTCCTATGGATCATGCCTACATCAACTCTGATGAATTTAGCAACTACAACTTTGGAGATGAGTTCTTGTTGGAAGGGGATGACATCGATACAGCTGATATACTACCACTCTCATCATCATTCCCACAGCTGCCTGGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

431

Amino Acids

48.9

Weight (kDa)

4.4

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 6 - 133 2.4e-17 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 535
AciI CCGC 1 cut(s) 20
AclWI GGATC 3 cut(s) 164, 512, 1170
AcoI YGGCCR 2 cut(s) 58, 1002
AcsI RAATTY 2 cut(s) 1124, 1187
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 5 cut(s) 670, 804, 877, 1035, 1044
AfiI CCNNNNNNNGG 6 cut(s) 153, 242, 293, 321, 812, 1052
AflIII ACRYGT 1 cut(s) 749
AgsI TTSAA 1 cut(s) 1059
AhlI ACTAGT 1 cut(s) 857
AjnI CCWGG 3 cut(s) 152, 306, 1285
AjuI GAANNNNNNNTTGG 2 cut(s) 303, 335
AluBI AGCT 3 cut(s) 595, 1247, 1282
AluI AGCT 3 cut(s) 595, 1247, 1282
Alw26I GTCTC 4 cut(s) 456, 638, 831, 941
AlwI GGATC 3 cut(s) 164, 512, 1170
AlwNI CAGNNNCTG 1 cut(s) 515
AoxI GGCC 5 cut(s) 58, 93, 144, 233, 1002
ApeKI GCWGC 3 cut(s) 101, 769, 1282
ApoI RAATTY 2 cut(s) 1124, 1187
ArsI GACNNNNNNTTYG 2 cut(s) 637, 669
AseI ATTAAT 1 cut(s) 761
AspA2I CCTAGG 1 cut(s) 485
AspS9I GGNCC 1 cut(s) 179
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 4 cut(s) 284, 308, 467, 954
AvaII GGWCC 1 cut(s) 179
AvrII CCTAGG 1 cut(s) 485
BaeGI GKGCMC 1 cut(s) 261
BalI TGGCCA 1 cut(s) 1004
BbvI GCAGC 3 cut(s) 113, 781, 1269
BccI CCATC 2 cut(s) 115, 613
BciT130I CCWGG 3 cut(s) 154, 308, 1287
BciVI GTATCC 2 cut(s) 709, 898
BclI TGATCA 4 cut(s) 409, 469, 613, 631
BcnI CCSGG 1 cut(s) 243
BcoDI GTCTC 4 cut(s) 456, 638, 831, 941
BcuI ACTAGT 1 cut(s) 857
BfaI CTAG 4 cut(s) 486, 722, 833, 858
BfuAI ACCTGC 1 cut(s) 535
BfuI GTATCC 2 cut(s) 709, 898
BglII AGATCT 1 cut(s) 199
BisI GCNGC 3 cut(s) 102, 770, 1283
BlnI CCTAGG 1 cut(s) 485
BlsI GCNGC 3 cut(s) 103, 771, 1284
Bme1390I CCNGG 4 cut(s) 154, 243, 308, 1287
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 266
BmrFI CCNGG 4 cut(s) 154, 243, 308, 1287
BmrI ACTGGG 1 cut(s) 768
BmuI ACTGGG 1 cut(s) 768
BplI GAGNNNNNCTC 2 cut(s) 436, 468
BpmI CTGGAG 1 cut(s) 283
BpuEI CTTGAG 1 cut(s) 438
BpuMI CCSGG 1 cut(s) 243
Bsa29I ATCGAT 1 cut(s) 1239
BsaBI GATNNNNATC 3 cut(s) 468, 471, 612
BsaI GGTCTC 1 cut(s) 831
BsaJI CCNNGG 5 cut(s) 96, 152, 241, 268, 485
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bsc4I CCNNNNNNNGG 6 cut(s) 153, 242, 293, 321, 812, 1052
Bse1I ACTGG 5 cut(s) 266, 360, 540, 774, 917
Bse3DI GCAATG 1 cut(s) 610
Bse8I GATNNNNATC 3 cut(s) 468, 471, 612
BseBI CCWGG 3 cut(s) 154, 308, 1287
BseCI ATCGAT 1 cut(s) 1239
BseDI CCNNGG 5 cut(s) 96, 152, 241, 268, 485
BseGI GGATG 2 cut(s) 107, 1237
BseJI GATNNNNATC 3 cut(s) 468, 471, 612
BseLI CCNNNNNNNGG 6 cut(s) 153, 242, 293, 321, 812, 1052
BseMI GCAATG 1 cut(s) 610
BseMII CTCAG 6 cut(s) 114, 572, 662, 750, 891, 981
BseNI ACTGG 5 cut(s) 266, 360, 540, 774, 917
BseSI GKGCMC 1 cut(s) 261
BseXI GCAGC 3 cut(s) 113, 781, 1269
BsgI GTGCAG 1 cut(s) 788
BshFI GGCC 5 cut(s) 60, 95, 146, 235, 1004
BshVI ATCGAT 1 cut(s) 1239
BsiSI CCGG 2 cut(s) 17, 243
BslI CCNNNNNNNGG 6 cut(s) 153, 242, 293, 321, 812, 1052
BsmAI GTCTC 4 cut(s) 456, 638, 831, 941
BsnI GGCC 5 cut(s) 60, 95, 146, 235, 1004
Bso31I GGTCTC 1 cut(s) 831
Bsp1286I GDGCHC 1 cut(s) 261
BspACI CCGC 1 cut(s) 20
BspANI GGCC 5 cut(s) 60, 95, 146, 235, 1004
BspCNI CTCAG 6 cut(s) 115, 571, 661, 749, 892, 980
BspDI ATCGAT 1 cut(s) 1239
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 1 cut(s) 266
BspMI ACCTGC 1 cut(s) 535
BspPI GGATC 3 cut(s) 164, 512, 1170
BspTNI GGTCTC 1 cut(s) 831
BsrDI GCAATG 1 cut(s) 610
BsrI ACTGG 5 cut(s) 266, 360, 540, 774, 917
BssECI CCNNGG 5 cut(s) 96, 152, 241, 268, 485
BssT1I CCWWGG 2 cut(s) 268, 485
Bst2UI CCWGG 3 cut(s) 154, 308, 1287
Bst4CI ACNGT 6 cut(s) 140, 279, 374, 511, 574, 802
BstC8I GCNNGC 1 cut(s) 1002
BstDEI CTNAG 6 cut(s) 123, 558, 648, 736, 900, 967
BstF5I GGATG 2 cut(s) 107, 1237
BstMAI GTCTC 4 cut(s) 456, 638, 831, 941
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNI CCWGG 3 cut(s) 154, 308, 1287
BstNSI RCATGY 2 cut(s) 753, 898
BstSCI CCNGG 4 cut(s) 152, 241, 306, 1285
BstSLI GKGCMC 1 cut(s) 261
BstV1I GCAGC 3 cut(s) 113, 781, 1269
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
Bsu15I ATCGAT 1 cut(s) 1239
BsuI GTATCC 2 cut(s) 709, 898
BsuRI GGCC 5 cut(s) 60, 95, 146, 235, 1004
BsuTUI ATCGAT 1 cut(s) 1239
BtsCI GGATG 2 cut(s) 107, 1237
BtsIMutI CAGTG 3 cut(s) 145, 259, 547
BveI ACCTGC 1 cut(s) 535
Cac8I GCNNGC 1 cut(s) 1002
CaiI CAGNNNCTG 1 cut(s) 515
CciI TCATGA 1 cut(s) 628
Cfr13I GGNCC 1 cut(s) 179
ClaI ATCGAT 1 cut(s) 1239
Csp6I GTAC 5 cut(s) 669, 803, 876, 1034, 1043
CviAII CATG 4 cut(s) 629, 750, 895, 1166
CviQI GTAC 5 cut(s) 669, 803, 876, 1034, 1043
DdeI CTNAG 6 cut(s) 123, 558, 648, 736, 900, 967
EaeI YGGCCR 2 cut(s) 58, 1002
Eco130I CCWWGG 2 cut(s) 268, 485
Eco31I GGTCTC 1 cut(s) 831
Eco32I GATATC 1 cut(s) 1147
Eco47I GGWCC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 179
EcoRII CCWGG 3 cut(s) 152, 306, 1285
EcoRV GATATC 1 cut(s) 1147
EcoT14I CCWWGG 2 cut(s) 268, 485
EcoT22I ATGCAT 1 cut(s) 697
ErhI CCWWGG 2 cut(s) 268, 485
FaeI CATG 4 cut(s) 632, 753, 898, 1169
FalI AAGNNNNNCTT 2 cut(s) 1023, 1055
FatI CATG 4 cut(s) 628, 749, 894, 1165
FauI CCCGC 1 cut(s) 13
FauNDI CATATG 1 cut(s) 996
FbaI TGATCA 4 cut(s) 409, 469, 613, 631
Fnu4HI GCNGC 3 cut(s) 102, 770, 1283
FokI GGATG 2 cut(s) 94, 1244
Fsp4HI GCNGC 3 cut(s) 102, 770, 1283
FspBI CTAG 4 cut(s) 486, 722, 833, 858
GluI GCNGC 3 cut(s) 102, 770, 1283
GsuI CTGGAG 1 cut(s) 283
HaeIII GGCC 5 cut(s) 60, 95, 146, 235, 1004
HapII CCGG 2 cut(s) 17, 243
Hin1II CATG 4 cut(s) 632, 753, 898, 1169
HinfI GANTC 3 cut(s) 30, 556, 646
HpaII CCGG 2 cut(s) 17, 243
HphI GGTGA 4 cut(s) 284, 308, 467, 954
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 8 cut(s) 29, 189, 618, 739, 820, 901, 970, 1183
Hpy188III TCNNGA 4 cut(s) 122, 455, 629, 635
Hpy8I GTNNAC 1 cut(s) 275
HpyAV CCTTC 5 cut(s) 225, 704, 969, 1020, 1220
HpyCH4III ACNGT 6 cut(s) 140, 279, 374, 511, 574, 802
HpyCH4V TGCA 3 cut(s) 695, 769, 926
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 6 cut(s) 123, 558, 648, 736, 900, 967
Hsp92II CATG 4 cut(s) 632, 753, 898, 1169
Ksp22I TGATCA 4 cut(s) 409, 469, 613, 631
LmnI GCTCC 1 cut(s) 264
Lsp1109I GCAGC 3 cut(s) 113, 781, 1269
MaeI CTAG 4 cut(s) 486, 722, 833, 858
MboII GAAGA 7 cut(s) 59, 88, 110, 240, 800, 944, 1127
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 261
MlsI TGGCCA 1 cut(s) 1004
MluCI AATT 8 cut(s) 50, 79, 318, 335, 563, 762, 1124, 1187
MluNI TGGCCA 1 cut(s) 1004
MlyI GAGTC 2 cut(s) 550, 640
MmeI TCCRAC 4 cut(s) 227, 342, 359, 1203
Mox20I TGGCCA 1 cut(s) 1004
Mph1103I ATGCAT 1 cut(s) 697
MscI TGGCCA 1 cut(s) 1004
MseI TTAA 1 cut(s) 761
Msp20I TGGCCA 1 cut(s) 1004
MspA1I CMGCKG 2 cut(s) 1247, 1282
MspI CCGG 2 cut(s) 17, 243
MspR9I CCNGG 4 cut(s) 154, 243, 308, 1287
MvaI CCWGG 3 cut(s) 154, 308, 1287
MwoI GCNNNNNNNGC 1 cut(s) 101
NciI CCSGG 1 cut(s) 243
NdeI CATATG 1 cut(s) 996
NlaIII CATG 4 cut(s) 632, 753, 898, 1169
NlaIV GGNNCC 1 cut(s) 266
NmeAIII GCCGAG 1 cut(s) 77
NsiI ATGCAT 1 cut(s) 697
NspI RCATGY 2 cut(s) 753, 898
PagI TCATGA 1 cut(s) 628
PciI ACATGT 1 cut(s) 749
PfeI GAWTC 1 cut(s) 30
PkrI GCNGC 3 cut(s) 103, 771, 1284
PleI GAGTC 2 cut(s) 550, 640
PpsI GAGTC 2 cut(s) 550, 640
PpuMI RGGWCCY 1 cut(s) 179
PscI ACATGT 1 cut(s) 749
PshBI ATTAAT 1 cut(s) 761
Psp5II RGGWCCY 1 cut(s) 179
Psp6I CCWGG 3 cut(s) 152, 306, 1285
PspGI CCWGG 3 cut(s) 152, 306, 1285
PspN4I GGNNCC 1 cut(s) 266
PspPI GGNCC 1 cut(s) 179
PspPPI RGGWCCY 1 cut(s) 179
PstNI CAGNNNCTG 1 cut(s) 515
PsuI RGATCY 1 cut(s) 199
PvuII CAGCTG 2 cut(s) 1247, 1282
RsaI GTAC 5 cut(s) 670, 804, 877, 1035, 1044
RsaNI GTAC 5 cut(s) 669, 803, 876, 1034, 1043
SaqAI TTAA 1 cut(s) 761
SatI GCNGC 3 cut(s) 102, 770, 1283
Sau96I GGNCC 1 cut(s) 179
SchI GAGTC 2 cut(s) 550, 640
ScrFI CCNGG 4 cut(s) 154, 243, 308, 1287
SduI GDGCHC 1 cut(s) 261
SinI GGWCC 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 453
SmoI CTYRAG 1 cut(s) 453
SpeI ACTAGT 1 cut(s) 857
Sse9I AATT 8 cut(s) 50, 79, 318, 335, 563, 762, 1124, 1187
SsiI CCGC 1 cut(s) 20
SspMI CTAG 4 cut(s) 486, 722, 833, 858
StyD4I CCNGG 4 cut(s) 152, 241, 306, 1285
StyI CCWWGG 2 cut(s) 268, 485
TaaI ACNGT 6 cut(s) 140, 279, 374, 511, 574, 802
TaqI TCGA 1 cut(s) 1239
TasI AATT 8 cut(s) 50, 79, 318, 335, 563, 762, 1124, 1187
TatI WGTACW 1 cut(s) 875
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 1 cut(s) 761
Tru9I TTAA 1 cut(s) 761
TscAI CASTG 3 cut(s) 145, 266, 547
TseI GCWGC 3 cut(s) 101, 769, 1282
TspDTI ATGAA 4 cut(s) 60, 744, 1137, 1200
TspRI CASTG 3 cut(s) 145, 266, 547
VpaK11BI GGWCC 1 cut(s) 179
VspI ATTAAT 1 cut(s) 761
XapI RAATTY 2 cut(s) 1124, 1187
XceI RCATGY 2 cut(s) 753, 898
XcmI CCANNNNNNNNNTGG 1 cut(s) 243
XmaJI CCTAGG 1 cut(s) 485
XspI CTAG 4 cut(s) 486, 722, 833, 858
Zsp2I ATGCAT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.