Rmu_sc0011236.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011236.1
OG0000371
Physical Location & Seq
Forward (+)
21100 .. 21681
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011236.1_g000004.1.cds

Sequence Viewer

Length: 582 bp
atggtaagcgaattgatcgcacgacaaactcgagattgggaacatggagcgagggagaaagatctaaactggttgatgatgagaacggaaatccaattgggacagaggaaattccggtatgagaatgatcattctttgcaccatgctgcttggcaaatggaagagtacagcagcaatttttctccccattggttgatttgtcatctcaaaaagaacaagatctcatccgaatcaaagaagagagaggacatgttatgcgcagatgatccatcaagatcgatagggatgaagtgcattaagccgaggaacaagaggttaagaagagtggatcatcaagaagtgatggaaaatactttgatgagtatgcccagcaataacaaagatcatccatcaacatcaacagagatgaatatgcccagcaacaactactactttaaaaatgaggaggatttaccacaaagttcaactaaaagtagtactaacgctaatgaccagcaattcagtattagtgaaaacttggatttcgttgcggatcatgttcatactaatctcatgccaattaataatgtgaggaggatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

22.84

Weight (kDa)

7.16

Isoelectric Point (pI)

58.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 259
AciI CCGC 1 cut(s) 530
AclWI GGATC 3 cut(s) 260, 336, 540
AcsI RAATTY 1 cut(s) 110
AfaI GTAC 2 cut(s) 167, 478
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 1 cut(s) 465
AlwI GGATC 3 cut(s) 260, 336, 540
Ama87I CYCGRG 1 cut(s) 30
ApeKI GCWGC 2 cut(s) 146, 171
ApoI RAATTY 1 cut(s) 110
AseI ATTAAT 1 cut(s) 561
AspLEI GCGC 1 cut(s) 260
AvaI CYCGRG 1 cut(s) 30
BbvI GCAGC 2 cut(s) 133, 183
BccI CCATC 3 cut(s) 277, 337, 397
BclI TGATCA 1 cut(s) 127
BglII AGATCT 2 cut(s) 61, 219
BisI GCNGC 2 cut(s) 147, 172
BlsI GCNGC 2 cut(s) 148, 173
BmcAI AGTACT 1 cut(s) 478
BmeT110I CYCGRG 1 cut(s) 30
Bsa29I ATCGAT 1 cut(s) 278
BsaJI CCNNGG 1 cut(s) 302
BsaWI WCCGGW 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 74
BseCI ATCGAT 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 302
BseGI GGATG 4 cut(s) 224, 291, 385, 582
BseNI ACTGG 1 cut(s) 74
BseRI GAGGAG 1 cut(s) 458
BseXI GCAGC 2 cut(s) 133, 183
BseYI CCCAGC 2 cut(s) 368, 416
BshVI ATCGAT 1 cut(s) 278
BsiHKCI CYCGRG 1 cut(s) 30
BsiSI CCGG 1 cut(s) 115
BslFI GGGAC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 114
BsoBI CYCGRG 1 cut(s) 30
Bsp143I GATC 9 cut(s) 15, 61, 127, 219, 265, 275, 328, 382, 532
BspACI CCGC 1 cut(s) 530
BspDI ATCGAT 1 cut(s) 278
BspPI GGATC 3 cut(s) 260, 336, 540
BsrI ACTGG 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 9 cut(s) 15, 61, 127, 219, 265, 275, 328, 382, 532
Bst6I CTCTTC 3 cut(s) 156, 233, 316
BstF5I GGATG 4 cut(s) 224, 291, 385, 582
BstHHI GCGC 1 cut(s) 260
BstKTI GATC 9 cut(s) 18, 64, 130, 222, 268, 278, 331, 385, 535
BstMBI GATC 9 cut(s) 15, 61, 127, 219, 265, 275, 328, 382, 532
BstNSI RCATGY 1 cut(s) 253
BstV1I GCAGC 2 cut(s) 133, 183
BstX2I RGATCY 2 cut(s) 61, 219
BstYI RGATCY 2 cut(s) 61, 219
Bsu15I ATCGAT 1 cut(s) 278
BsuTUI ATCGAT 1 cut(s) 278
BtsCI GGATG 4 cut(s) 224, 291, 385, 582
CfoI GCGC 1 cut(s) 260
ClaI ATCGAT 1 cut(s) 278
Csp6I GTAC 2 cut(s) 166, 477
CviAII CATG 5 cut(s) 44, 143, 250, 536, 553
CviJI RGCY 1 cut(s) 301
CviKI_1 RGCY 1 cut(s) 301
CviQI GTAC 2 cut(s) 166, 477
DpnI GATC 9 cut(s) 17, 63, 129, 221, 267, 277, 330, 384, 534
DpnII GATC 9 cut(s) 15, 61, 127, 219, 265, 275, 328, 382, 532
DraI TTTAAA 1 cut(s) 436
Eam1104I CTCTTC 3 cut(s) 156, 233, 316
EarI CTCTTC 3 cut(s) 156, 233, 316
Eco88I CYCGRG 1 cut(s) 30
FaeI CATG 5 cut(s) 47, 146, 253, 539, 556
FaqI GGGAC 1 cut(s) 114
FatI CATG 5 cut(s) 43, 142, 249, 535, 552
FbaI TGATCA 1 cut(s) 127
Fnu4HI GCNGC 2 cut(s) 147, 172
FokI GGATG 3 cut(s) 211, 298, 372
Fsp4HI GCNGC 2 cut(s) 147, 172
FspI TGCGCA 1 cut(s) 259
GlaI GCGC 1 cut(s) 259
GluI GCNGC 2 cut(s) 147, 172
GsaI CCCAGC 2 cut(s) 372, 420
HapII CCGG 1 cut(s) 115
HhaI GCGC 1 cut(s) 260
Hin1II CATG 5 cut(s) 47, 146, 253, 539, 556
Hin6I GCGC 1 cut(s) 258
HinP1I GCGC 1 cut(s) 258
HinfI GANTC 1 cut(s) 230
HpaII CCGG 1 cut(s) 115
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 3 cut(s) 32, 273, 335
HpyCH4V TGCA 2 cut(s) 139, 294
Hsp92II CATG 5 cut(s) 47, 146, 253, 539, 556
HspAI GCGC 1 cut(s) 258
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 9 cut(s) 15, 61, 127, 219, 265, 275, 328, 382, 532
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 5 cut(s) 55, 128, 382, 430, 506
Lsp1109I GCAGC 2 cut(s) 133, 183
MalI GATC 9 cut(s) 17, 63, 129, 221, 267, 277, 330, 384, 534
MboI GATC 9 cut(s) 15, 61, 127, 219, 265, 275, 328, 382, 532
MboII GAAGA 3 cut(s) 173, 250, 333
MfeI CAATTG 1 cut(s) 95
MflI RGATCY 2 cut(s) 61, 219
MluCI AATT 6 cut(s) 11, 95, 110, 175, 497, 558
MnlI CCTC 9 cut(s) 45, 99, 238, 297, 306, 436, 439, 564, 567
MseI TTAA 4 cut(s) 297, 317, 435, 561
MspI CCGG 1 cut(s) 115
MunI CAATTG 1 cut(s) 95
NdeII GATC 9 cut(s) 15, 61, 127, 219, 265, 275, 328, 382, 532
NlaIII CATG 5 cut(s) 47, 146, 253, 539, 556
NmeAIII GCCGAG 1 cut(s) 327
NsbI TGCGCA 1 cut(s) 259
NspI RCATGY 1 cut(s) 253
PaeR7I CTCGAG 1 cut(s) 30
PciI ACATGT 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 28
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 2 cut(s) 148, 173
PscI ACATGT 1 cut(s) 249
PshBI ATTAAT 1 cut(s) 561
PspFI CCCAGC 2 cut(s) 368, 416
PsuI RGATCY 2 cut(s) 61, 219
RsaI GTAC 2 cut(s) 167, 478
RsaNI GTAC 2 cut(s) 166, 477
SaqAI TTAA 4 cut(s) 297, 317, 435, 561
SatI GCNGC 2 cut(s) 147, 172
Sau3AI GATC 9 cut(s) 15, 61, 127, 219, 265, 275, 328, 382, 532
ScaI AGTACT 1 cut(s) 478
SetI ASST 1 cut(s) 317
Sfr274I CTCGAG 1 cut(s) 30
SlaI CTCGAG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
Sse9I AATT 6 cut(s) 11, 95, 110, 175, 497, 558
SsiI CCGC 1 cut(s) 530
TaqI TCGA 2 cut(s) 31, 278
TasI AATT 6 cut(s) 11, 95, 110, 175, 497, 558
TatI WGTACW 2 cut(s) 165, 476
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 4 cut(s) 297, 317, 435, 561
Tru9I TTAA 4 cut(s) 297, 317, 435, 561
TseI GCWGC 2 cut(s) 146, 171
TspDTI ATGAA 3 cut(s) 302, 422, 530
TspGWI ACGGA 1 cut(s) 101
VspI ATTAAT 1 cut(s) 561
XapI RAATTY 1 cut(s) 110
XceI RCATGY 1 cut(s) 253
XhoI CTCGAG 1 cut(s) 30
ZrmI AGTACT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.