Rorug02G0564900

galactinol--sucrose galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000371
Physical Location & Seq
Forward (+)
69011025 .. 69014749
3725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0564900.1

Sequence Viewer

Length: 684 bp
ATGGGCGCTGTCTGTTGTTGTTTGAATGCCGATGATTTTGAAGATTATGTGAATCCAAACAGTTCTGCACTGAGGAACTGTCCGTGTCTTGGTTGCTTTGGTCAAAACTTTGTAAATGTGTATTCATCACTTTTCAGAAGAGGGGAACTGCAGTCGCTCCCCTCATCCATTCAGGGGGCTGCATCGATGACTTCTGCAGCCTCACTTGATAGCTCTTTATCTGACATGTATCGCTCTCCTCCAAGGCCCTTGCCTTATGATGCTGACCCCAGATACATCCGTTTGCAGCGGGATGGATTGGTTTCTAGGCGTGAGAAAGGCACTAGTCATTCTCATGAGGAGACCGAACCTCTAAGAAGTGATACCGATGCAGATTCAGAATGTTTGAGTACAGGAGACAAATGGAATGGATCTACTTGTGAAGATGGATCAAAAGAACATCGTGCGAGGTCCTCGATGAAGTTGTCATCTGCAAAAGCAACAACTGGATTTGGGATCATTTATACATCTTCAGAAGAAGAGGATGTATGCCCAACATGTCTTGAAGAATATACTCCAGAAAACCCCAAAATAATGACAAAATGCTCTCATCATTATCATCTCGCTTGTATATATGAGTGGATGGAGAGAAGTGAAAGTTGTCCTGTTTGTGGCAAGGTCATGGCATTCGATGAAACGACTTAA

Protein Analysis

227

Amino Acids

25.14

Weight (kDa)

4.93

Isoelectric Point (pI)

64.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 172 - 217 1.5e-10 RING-H2 zinc finger domain
zf-ANAPC11 PF12861 175 - 224 6.9e-07 Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_2 PF13639 176 - 217 3.8e-11 Ring finger domain
zf-C3HC4_2 PF13923 177 - 217 1.5e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 177 - 217 1.5e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 177 - 219 3.6e-06 zinc-RING finger domain
zf-RING_UBOX PF13445 177 - 215 8.1e-06 RING-type zinc-finger
zf-RING_11 PF17123 177 - 204 8.6e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 289
AclWI GGATC 3 cut(s) 418, 436, 503
AcuI CTGAAG 1 cut(s) 495
AfaI GTAC 1 cut(s) 391
AfiI CCNNNNNNNGG 3 cut(s) 89, 174, 650
AflIII ACRYGT 2 cut(s) 225, 536
AgsI TTSAA 3 cut(s) 25, 41, 545
AhlI ACTAGT 1 cut(s) 323
AluBI AGCT 1 cut(s) 213
AluI AGCT 1 cut(s) 213
Alw26I GTCTC 2 cut(s) 335, 390
AlwI GGATC 3 cut(s) 418, 436, 503
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 3 cut(s) 179, 197, 286
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 246, 450
AvaII GGWCC 1 cut(s) 450
BaeI ACNNNNGTAYC 2 cut(s) 265, 298
BbvI GCAGC 3 cut(s) 166, 209, 298
BccI CCATC 3 cut(s) 287, 419, 616
BcoDI GTCTC 2 cut(s) 335, 390
BcuI ACTAGT 1 cut(s) 323
BfaI CTAG 2 cut(s) 306, 324
BfmI CTRYAG 2 cut(s) 149, 195
BfoI RGCGCY 1 cut(s) 9
BisI GCNGC 3 cut(s) 180, 198, 287
BlsI GCNGC 3 cut(s) 181, 199, 288
Bme18I GGWCC 1 cut(s) 450
BmgT120I GGNCC 2 cut(s) 246, 450
BmsI GCATC 3 cut(s) 191, 250, 358
BpmI CTGGAG 1 cut(s) 540
Bsa29I ATCGAT 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 335
BsaJI CCNNGG 1 cut(s) 242
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 174, 650
Bse1I ACTGG 1 cut(s) 490
BseCI ATCGAT 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 5 cut(s) 164, 276, 298, 529, 627
BseLI CCNNNNNNNGG 3 cut(s) 89, 174, 650
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 490
BseRI GAGGAG 2 cut(s) 228, 353
BseXI GCAGC 3 cut(s) 166, 209, 298
BsgI GTGCAG 1 cut(s) 51
BshFI GGCC 1 cut(s) 247
BshVI ATCGAT 1 cut(s) 185
BslI CCNNNNNNNGG 3 cut(s) 89, 174, 650
BsmAI GTCTC 2 cut(s) 335, 390
BsmI GAATGC 2 cut(s) 31, 665
BsnI GGCC 1 cut(s) 247
Bso31I GGTCTC 1 cut(s) 335
Bsp143I GATC 3 cut(s) 410, 428, 495
BspACI CCGC 1 cut(s) 289
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 1 cut(s) 63
BspDI ATCGAT 1 cut(s) 185
BspHI TCATGA 1 cut(s) 334
BspMAI CTGCAG 2 cut(s) 153, 199
BspPI GGATC 3 cut(s) 418, 436, 503
BspTNI GGTCTC 1 cut(s) 335
BsrI ACTGG 1 cut(s) 490
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 3 cut(s) 410, 428, 495
BssT1I CCWWGG 1 cut(s) 242
Bst4CI ACNGT 2 cut(s) 62, 80
Bst6I CTCTTC 2 cut(s) 133, 513
BstDEI CTNAG 2 cut(s) 71, 353
BstF5I GGATG 5 cut(s) 164, 276, 298, 529, 627
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 3 cut(s) 413, 431, 498
BstMAI GTCTC 2 cut(s) 335, 390
BstMBI GATC 3 cut(s) 410, 428, 495
BstNSI RCATGY 2 cut(s) 229, 540
BstSFI CTRYAG 2 cut(s) 149, 195
BstV1I GCAGC 3 cut(s) 166, 209, 298
BstX2I RGATCY 1 cut(s) 410
BstYI RGATCY 1 cut(s) 410
Bsu15I ATCGAT 1 cut(s) 185
BsuRI GGCC 1 cut(s) 247
BsuTUI ATCGAT 1 cut(s) 185
BtsCI GGATG 5 cut(s) 164, 276, 298, 529, 627
BtsIMutI CAGTG 1 cut(s) 68
CciI TCATGA 1 cut(s) 334
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 2 cut(s) 246, 450
ClaI ATCGAT 1 cut(s) 185
Csp6I GTAC 1 cut(s) 390
CviAII CATG 4 cut(s) 226, 335, 537, 661
CviJI RGCY 4 cut(s) 179, 200, 213, 247
CviKI_1 RGCY 4 cut(s) 179, 200, 213, 247
CviQI GTAC 1 cut(s) 390
DdeI CTNAG 2 cut(s) 71, 353
DpnI GATC 3 cut(s) 412, 430, 497
DpnII GATC 3 cut(s) 410, 428, 495
Eam1104I CTCTTC 2 cut(s) 133, 513
EarI CTCTTC 2 cut(s) 133, 513
Eco130I CCWWGG 1 cut(s) 242
Eco31I GGTCTC 1 cut(s) 335
Eco47I GGWCC 1 cut(s) 450
Eco57I CTGAAG 1 cut(s) 495
EcoO109I RGGNCCY 2 cut(s) 246, 450
EcoT14I CCWWGG 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 4 cut(s) 229, 338, 540, 664
FatI CATG 4 cut(s) 225, 334, 536, 660
FauI CCCGC 1 cut(s) 282
Fnu4HI GCNGC 3 cut(s) 180, 198, 287
FokI GGATG 5 cut(s) 151, 263, 305, 536, 634
Fsp4HI GCNGC 3 cut(s) 180, 198, 287
FspBI CTAG 2 cut(s) 306, 324
GlaI GCGC 1 cut(s) 7
GluI GCNGC 3 cut(s) 180, 198, 287
GsuI CTGGAG 1 cut(s) 540
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 1 cut(s) 247
HhaI GCGC 1 cut(s) 8
Hin1II CATG 4 cut(s) 229, 338, 540, 664
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HinfI GANTC 2 cut(s) 52, 374
Hpy188I TCNGA 4 cut(s) 137, 223, 379, 514
Hpy188III TCNNGA 3 cut(s) 335, 542, 557
HpyCH4III ACNGT 2 cut(s) 62, 80
HpyCH4V TGCA 7 cut(s) 68, 151, 182, 197, 286, 371, 473
HpyF3I CTNAG 2 cut(s) 71, 353
Hsp92II CATG 4 cut(s) 229, 338, 540, 664
HspAI GCGC 1 cut(s) 6
Kzo9I GATC 3 cut(s) 410, 428, 495
LmnI GCTCC 1 cut(s) 162
LpnPI CCDG 6 cut(s) 158, 283, 378, 471, 570, 657
Lsp1109I GCAGC 3 cut(s) 166, 209, 298
LweI GCATC 3 cut(s) 191, 250, 358
MaeI CTAG 2 cut(s) 306, 324
MalI GATC 3 cut(s) 412, 430, 497
MboI GATC 3 cut(s) 410, 428, 495
MboII GAAGA 7 cut(s) 53, 150, 434, 501, 527, 530, 557
MflI RGATCY 1 cut(s) 410
MseI TTAA 1 cut(s) 682
MslI CAYNNNNRTG 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 289
Mva1269I GAATGC 2 cut(s) 31, 665
NdeII GATC 3 cut(s) 410, 428, 495
NlaIII CATG 4 cut(s) 229, 338, 540, 664
NspI RCATGY 2 cut(s) 229, 540
PagI TCATGA 1 cut(s) 334
PciI ACATGT 2 cut(s) 225, 536
PctI GAATGC 2 cut(s) 31, 665
PfeI GAWTC 2 cut(s) 52, 374
PkrI GCNGC 3 cut(s) 181, 199, 288
PpuMI RGGWCCY 1 cut(s) 450
PscI ACATGT 2 cut(s) 225, 536
Psp5II RGGWCCY 1 cut(s) 450
PspPI GGNCC 2 cut(s) 246, 450
PspPPI RGGWCCY 1 cut(s) 450
PstI CTGCAG 2 cut(s) 153, 199
PsuI RGATCY 1 cut(s) 410
RsaI GTAC 1 cut(s) 391
RsaNI GTAC 1 cut(s) 390
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 1 cut(s) 682
SatI GCNGC 3 cut(s) 180, 198, 287
Sau3AI GATC 3 cut(s) 410, 428, 495
Sau96I GGNCC 2 cut(s) 246, 450
SetI ASST 4 cut(s) 215, 352, 452, 660
SfaNI GCATC 3 cut(s) 191, 250, 358
SfcI CTRYAG 2 cut(s) 149, 195
SinI GGWCC 1 cut(s) 450
SmiMI CAYNNNNRTG 1 cut(s) 333
SpeI ACTAGT 1 cut(s) 323
SsiI CCGC 1 cut(s) 289
SspMI CTAG 2 cut(s) 306, 324
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 2 cut(s) 62, 80
TaqI TCGA 3 cut(s) 185, 455, 669
TaqII GACCGA 1 cut(s) 359
TatI WGTACW 1 cut(s) 389
TfiI GAWTC 2 cut(s) 52, 374
Tru1I TTAA 1 cut(s) 682
Tru9I TTAA 1 cut(s) 682
TscAI CASTG 1 cut(s) 75
TseI GCWGC 3 cut(s) 179, 197, 286
TspDTI ATGAA 2 cut(s) 114, 473
TspGWI ACGGA 2 cut(s) 72, 269
TspRI CASTG 1 cut(s) 75
VpaK11BI GGWCC 1 cut(s) 450
XceI RCATGY 2 cut(s) 229, 540
XspI CTAG 2 cut(s) 306, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.