MD11G1075500.v1.1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000371
Physical Location & Seq
Reverse (-)
6424099 .. 6425058
960 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1075500.v1.1.491

Sequence Viewer

Length: 960 bp
ATGGAGAATTTCTACGGCAATACGCTGATGGGTTCTTACGGTAACGTGCCGCCGGGTTTTCGATTCCTTCCAACCGATCAAGAACTGGTCGGTTTCTATCTTTCCAACAGAGTCGTCGCCGGAAAGAAGTTTATGGCGTACTGCCGGAGCTTCATGCACGAGTTCGACCCCTTCGGGGAGATGGAGCCGTGGGTTATCTGGGAGAATTTCGGCGGACGTTCCCTTGTGGATCAAGACTTGTATTTGTTCTACGAACTGCATTATCTGCCGTCGAGCTACATCAAACGCACCATTGACGCCGGAGTCACCTGGAGCCAGAGCTCATATAAGATGGTTAAGGATTTTGAAGGAAAACCAATTGGAGATAAGAGGTGTTTCAAGTATAAGAACGAGGGGTGTGACCAGGACGGTGGCTGGCTCCTAGAAGAATACAGTCTTCGTCAAACCCAAGAAATCGTCGATGGCAATGGCTCCGATCATAAATCCCGAACGGTTGTTCTTTGCCGGCTTAAAAAGAATCCGAGGTGCGCGAACATGAAAGATCATCCAACCCGAGAATTGAAGGAGAAACCGGAGAACGAGAGAGCAAGGAAAAGTAGTTCTCTTGTGCACGTTGATGAAAGCAATAAGAAGATCAGTGGAACTAATCAAGATCAGGAGTGCAAGAGCGGCATTGACCTGAATGCAATGCCGCCAGATTTTTCTGATCATGATTGTCCCACGACGACCAGTGGCGTTTGTTCTTGTCCGATATGCTTGGATGGCGGAGGTGGTGAATCGCTTTTAGAGGATGAAGACTTTCTTTTAGACGATGAAGATTTGCTTAAAGGCGTCGACTTATCATTAGGACCACCGGTGCAGCCTCAGTTTGAAGAAACTCAAGTTGTGCCTCGGCCAGCTTCAACCGGCTTTGAGGACGGACTGACTGCAGATGAAAGCTATTTTGTCAATGACCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

320

Amino Acids

36.07

Weight (kDa)

4.75

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 17 - 146 9.9e-15 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
AccBSI CCGCTC 1 cut(s) 669
AccI GTMKAC 1 cut(s) 834
AccII CGCG 1 cut(s) 530
AciI CCGC 5 cut(s) 50, 213, 669, 692, 765
AclWI GGATC 1 cut(s) 237
AcoI YGGCCR 1 cut(s) 893
AcsI RAATTY 2 cut(s) 7, 205
AcyI GRCGYC 2 cut(s) 297, 831
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 175
AgeI ACCGGT 2 cut(s) 853, 954
AgsI TTSAA 5 cut(s) 347, 379, 562, 872, 903
AjnI CCWGG 2 cut(s) 308, 402
AloI GAACNNNNNNTCC 2 cut(s) 583, 615
AluBI AGCT 5 cut(s) 150, 276, 321, 899, 939
AluI AGCT 5 cut(s) 150, 276, 321, 899, 939
Alw21I GWGCWC 2 cut(s) 323, 612
Alw44I GTGCAC 1 cut(s) 608
AlwI GGATC 1 cut(s) 237
Ama87I CYCGRG 1 cut(s) 552
AoxI GGCC 1 cut(s) 893
ApaLI GTGCAC 1 cut(s) 608
ApeKI GCWGC 1 cut(s) 859
ApoI RAATTY 2 cut(s) 7, 205
AsiGI ACCGGT 2 cut(s) 853, 954
Asp700I GAANNNNTTC 1 cut(s) 798
AspLEI GCGC 1 cut(s) 530
AspS9I GGNCC 1 cut(s) 848
AsuC2I CCSGG 1 cut(s) 54
AsuHPI GGTGA 2 cut(s) 298, 785
AvaI CYCGRG 1 cut(s) 552
AvaII GGWCC 1 cut(s) 848
BaeGI GKGCMC 1 cut(s) 612
BanII GRGCYC 1 cut(s) 323
BauI CACGAG 1 cut(s) 158
BbsI GAAGAC 2 cut(s) 428, 801
Bbv12I GWGCWC 2 cut(s) 323, 612
BbvI GCAGC 1 cut(s) 871
BccI CCATC 5 cut(s) 22, 175, 325, 455, 755
BceAI ACGGC 3 cut(s) 31, 172, 253
BciT130I CCWGG 2 cut(s) 310, 404
BclI TGATCA 1 cut(s) 706
BcnI CCSGG 1 cut(s) 54
BfaI CTAG 1 cut(s) 422
BfmI CTRYAG 1 cut(s) 927
BisI GCNGC 4 cut(s) 50, 670, 692, 860
BlsI GCNGC 4 cut(s) 51, 671, 693, 861
Bme1390I CCNGG 3 cut(s) 54, 310, 404
Bme18I GGWCC 1 cut(s) 848
BmeT110I CYCGRG 1 cut(s) 552
BmgT120I GGNCC 1 cut(s) 848
BmiI GGNNCC 4 cut(s) 186, 314, 419, 472
BmrFI CCNGG 3 cut(s) 54, 310, 404
BpiI GAAGAC 2 cut(s) 428, 801
BpmI CTGGAG 1 cut(s) 331
BpuEI CTTGAG 1 cut(s) 864
BpuMI CCSGG 1 cut(s) 54
BsaHI GRCGYC 2 cut(s) 297, 831
BsaJI CCNNGG 3 cut(s) 188, 521, 890
BsaWI WCCGGW 3 cut(s) 571, 853, 954
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse118I RCCGGY 4 cut(s) 504, 853, 905, 954
Bse1I ACTGG 2 cut(s) 90, 729
Bse3DI GCAATG 2 cut(s) 472, 693
BseBI CCWGG 2 cut(s) 310, 404
BseDI CCNNGG 3 cut(s) 188, 521, 890
BseGI GGATG 3 cut(s) 544, 766, 796
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMI GCAATG 2 cut(s) 472, 693
BseMII CTCAG 1 cut(s) 878
BseNI ACTGG 2 cut(s) 90, 729
BseSI GKGCMC 1 cut(s) 612
BseXI GCAGC 1 cut(s) 871
BsgI GTGCAG 1 cut(s) 878
Bsh1236I CGCG 1 cut(s) 530
BshFI GGCC 1 cut(s) 895
BshTI ACCGGT 2 cut(s) 853, 954
BsiHKAI GWGCWC 2 cut(s) 323, 612
BsiHKCI CYCGRG 1 cut(s) 552
BsiSI CCGG 9 cut(s) 53, 120, 145, 300, 505, 572, 854, 906, 955
BslFI GGGAC 1 cut(s) 702
BslI CCNNNNNNNGG 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 702
BsmI GAATGC 1 cut(s) 688
BsnI GGCC 1 cut(s) 895
BsoBI CYCGRG 1 cut(s) 552
Bsp1286I GDGCHC 2 cut(s) 323, 612
Bsp143I GATC 7 cut(s) 76, 229, 475, 541, 633, 652, 706
BspACI CCGC 5 cut(s) 50, 213, 669, 692, 765
BspANI GGCC 1 cut(s) 895
BspCNI CTCAG 1 cut(s) 877
BspFNI CGCG 1 cut(s) 530
BspHI TCATGA 1 cut(s) 709
BspLI GGNNCC 4 cut(s) 186, 314, 419, 472
BspMAI CTGCAG 1 cut(s) 931
BspPI GGATC 1 cut(s) 237
BsrBI CCGCTC 1 cut(s) 669
BsrDI GCAATG 2 cut(s) 472, 693
BsrFI RCCGGY 4 cut(s) 504, 853, 905, 954
BsrI ACTGG 2 cut(s) 90, 729
BssAI RCCGGY 4 cut(s) 504, 853, 905, 954
BssECI CCNNGG 3 cut(s) 188, 521, 890
BssMI GATC 7 cut(s) 76, 229, 475, 541, 633, 652, 706
BssNI GRCGYC 2 cut(s) 297, 831
BssSI CACGAG 1 cut(s) 158
Bst2BI CACGAG 1 cut(s) 158
Bst2UI CCWGG 2 cut(s) 310, 404
Bst4CI ACNGT 4 cut(s) 41, 410, 434, 493
BstACI GRCGYC 2 cut(s) 297, 831
BstAPI GCANNNNNTGC 1 cut(s) 265
BstC8I GCNNGC 3 cut(s) 416, 506, 897
BstDEI CTNAG 1 cut(s) 864
BstDSI CCRYGG 1 cut(s) 188
BstF5I GGATG 3 cut(s) 544, 766, 796
BstFNI CGCG 1 cut(s) 530
BstHHI GCGC 1 cut(s) 530
BstKTI GATC 7 cut(s) 79, 232, 478, 544, 636, 655, 709
BstMBI GATC 7 cut(s) 76, 229, 475, 541, 633, 652, 706
BstMWI GCNNNNNNNGC 3 cut(s) 265, 669, 762
BstNI CCWGG 2 cut(s) 310, 404
BstSCI CCNGG 3 cut(s) 52, 308, 402
BstSFI CTRYAG 1 cut(s) 927
BstSLI GKGCMC 1 cut(s) 612
BstUI CGCG 1 cut(s) 530
BstV1I GCAGC 1 cut(s) 871
BstV2I GAAGAC 2 cut(s) 428, 801
BstXI CCANNNNNNTGG 1 cut(s) 410
BsuRI GGCC 1 cut(s) 895
BtgI CCRYGG 1 cut(s) 188
BtsCI GGATG 3 cut(s) 544, 766, 796
BtsIMutI CAGTG 2 cut(s) 643, 736
Cac8I GCNNGC 3 cut(s) 416, 506, 897
CciI TCATGA 1 cut(s) 709
CfoI GCGC 1 cut(s) 530
Cfr10I RCCGGY 4 cut(s) 504, 853, 905, 954
Cfr13I GGNCC 1 cut(s) 848
CseI GACGC 2 cut(s) 305, 820
Csp6I GTAC 1 cut(s) 139
CspAI ACCGGT 2 cut(s) 853, 954
CviAII CATG 3 cut(s) 154, 535, 710
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 1 cut(s) 864
DpnI GATC 7 cut(s) 78, 231, 477, 543, 635, 654, 708
DpnII GATC 7 cut(s) 76, 229, 475, 541, 633, 652, 706
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
EaeI YGGCCR 1 cut(s) 893
EciI GGCGGA 2 cut(s) 228, 780
Ecl136II GAGCTC 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 848
Eco53kI GAGCTC 1 cut(s) 321
Eco88I CYCGRG 1 cut(s) 552
EcoICRI GAGCTC 1 cut(s) 321
EcoRII CCWGG 2 cut(s) 308, 402
EcoT38I GRGCYC 1 cut(s) 323
FaeI CATG 3 cut(s) 157, 538, 713
FaiI YATR 9 cut(s) 134, 155, 325, 327, 384, 480, 536, 711, 754
FalI AAGNNNNNCTT 4 cut(s) 786, 818, 807, 839
FaqI GGGAC 1 cut(s) 702
FatI CATG 3 cut(s) 153, 534, 709
FbaI TGATCA 1 cut(s) 706
FblI GTMKAC 1 cut(s) 834
Fnu4HI GCNGC 4 cut(s) 50, 670, 692, 860
FokI GGATG 3 cut(s) 531, 773, 803
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 4 cut(s) 50, 670, 692, 860
FspBI CTAG 1 cut(s) 422
GlaI GCGC 1 cut(s) 529
GluI GCNGC 4 cut(s) 50, 670, 692, 860
GsuI CTGGAG 1 cut(s) 331
HaeIII GGCC 1 cut(s) 895
HapII CCGG 9 cut(s) 53, 120, 145, 300, 505, 572, 854, 906, 955
HgaI GACGC 2 cut(s) 305, 820
HhaI GCGC 1 cut(s) 530
Hin1I GRCGYC 2 cut(s) 297, 831
Hin1II CATG 3 cut(s) 157, 538, 713
Hin6I GCGC 1 cut(s) 528
HinP1I GCGC 1 cut(s) 528
HincII GTYRAC 1 cut(s) 835
HindII GTYRAC 1 cut(s) 835
HinfI GANTC 5 cut(s) 63, 111, 303, 517, 776
HpaII CCGG 9 cut(s) 53, 120, 145, 300, 505, 572, 854, 906, 955
HphI GGTGA 2 cut(s) 298, 785
Hpy166II GTNNAC 2 cut(s) 610, 835
Hpy188I TCNGA 4 cut(s) 475, 522, 706, 750
Hpy188III TCNNGA 6 cut(s) 80, 233, 486, 650, 656, 710
Hpy8I GTNNAC 2 cut(s) 610, 835
Hpy99I CGWCG 5 cut(s) 119, 274, 461, 727, 836
HpyAV CCTTC 4 cut(s) 77, 181, 341, 556
HpyCH4III ACNGT 4 cut(s) 41, 410, 434, 493
HpyCH4IV ACGT 3 cut(s) 45, 217, 612
HpyCH4V TGCA 7 cut(s) 157, 259, 610, 663, 686, 859, 929
HpyF10VI GCNNNNNNNGC 3 cut(s) 265, 669, 762
HpyF3I CTNAG 1 cut(s) 864
HpySE526I ACGT 3 cut(s) 45, 217, 612
Hsp92I GRCGYC 2 cut(s) 297, 831
Hsp92II CATG 3 cut(s) 157, 538, 713
HspAI GCGC 1 cut(s) 528
KroI GCCGGC 1 cut(s) 504
KroNI GCCGGC 1 cut(s) 506
Ksp22I TGATCA 1 cut(s) 706
Kzo9I GATC 7 cut(s) 76, 229, 475, 541, 633, 652, 706
LmnI GCTCC 5 cut(s) 147, 184, 312, 423, 476
Lsp1109I GCAGC 1 cut(s) 871
MaeI CTAG 1 cut(s) 422
MaeII ACGT 3 cut(s) 45, 217, 612
MaeIII GTNAC 3 cut(s) 41, 304, 398
MalI GATC 7 cut(s) 78, 231, 477, 543, 635, 654, 708
MbiI CCGCTC 1 cut(s) 669
MboI GATC 7 cut(s) 76, 229, 475, 541, 633, 652, 706
MboII GAAGA 6 cut(s) 428, 437, 643, 806, 827, 884
MfeI CAATTG 1 cut(s) 357
MhlI GDGCHC 2 cut(s) 323, 612
MluCI AATT 4 cut(s) 7, 205, 357, 557
MlyI GAGTC 2 cut(s) 120, 312
MmeI TCCRAC 3 cut(s) 95, 129, 572
MnlI CCTC 8 cut(s) 363, 385, 516, 761, 781, 873, 900, 907
MroNI GCCGGC 1 cut(s) 504
MroXI GAANNNNTTC 1 cut(s) 798
MseI TTAA 3 cut(s) 336, 510, 825
MslI CAYNNNNRTG 1 cut(s) 615
MspI CCGG 9 cut(s) 53, 120, 145, 300, 505, 572, 854, 906, 955
MspR9I CCNGG 3 cut(s) 54, 310, 404
MunI CAATTG 1 cut(s) 357
Mva1269I GAATGC 1 cut(s) 688
MvaI CCWGG 2 cut(s) 310, 404
MvnI CGCG 1 cut(s) 530
MwoI GCNNNNNNNGC 3 cut(s) 265, 669, 762
NaeI GCCGGC 1 cut(s) 506
NciI CCSGG 1 cut(s) 54
NdeII GATC 7 cut(s) 76, 229, 475, 541, 633, 652, 706
NgoMIV GCCGGC 1 cut(s) 504
NlaIII CATG 3 cut(s) 157, 538, 713
NlaIV GGNNCC 4 cut(s) 186, 314, 419, 472
NmeAIII GCCGAG 1 cut(s) 871
NmuCI GTSAC 2 cut(s) 304, 398
PagI TCATGA 1 cut(s) 709
PctI GAATGC 1 cut(s) 688
PdiI GCCGGC 1 cut(s) 506
PdmI GAANNNNTTC 1 cut(s) 798
PfeI GAWTC 3 cut(s) 63, 517, 776
PinAI ACCGGT 2 cut(s) 853, 954
PkrI GCNGC 4 cut(s) 51, 671, 693, 861
PleI GAGTC 2 cut(s) 119, 311
PpsI GAGTC 2 cut(s) 119, 311
Psp124BI GAGCTC 1 cut(s) 323
Psp6I CCWGG 2 cut(s) 308, 402
PspGI CCWGG 2 cut(s) 308, 402
PspN4I GGNNCC 4 cut(s) 186, 314, 419, 472
PspPI GGNCC 1 cut(s) 848
PstI CTGCAG 1 cut(s) 931
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 615
SacI GAGCTC 1 cut(s) 323
SalI GTCGAC 1 cut(s) 833
SaqAI TTAA 3 cut(s) 336, 510, 825
SatI GCNGC 4 cut(s) 50, 670, 692, 860
Sau3AI GATC 7 cut(s) 76, 229, 475, 541, 633, 652, 706
Sau96I GGNCC 1 cut(s) 848
SchI GAGTC 2 cut(s) 120, 312
ScrFI CCNGG 3 cut(s) 54, 310, 404
SduI GDGCHC 2 cut(s) 323, 612
SfcI CTRYAG 1 cut(s) 927
SgrAI CRCCGGYG 1 cut(s) 853
SinI GGWCC 1 cut(s) 848
SmiMI CAYNNNNRTG 1 cut(s) 615
SmlI CTYRAG 1 cut(s) 879
SmoI CTYRAG 1 cut(s) 879
Sse9I AATT 4 cut(s) 7, 205, 357, 557
SsiI CCGC 5 cut(s) 50, 213, 669, 692, 765
SspMI CTAG 1 cut(s) 422
SstI GAGCTC 1 cut(s) 323
StyD4I CCNGG 3 cut(s) 52, 308, 402
TaaI ACNGT 4 cut(s) 41, 410, 434, 493
TaiI ACGT 3 cut(s) 48, 220, 615
TaqI TCGA 5 cut(s) 61, 165, 272, 459, 834
TasI AATT 4 cut(s) 7, 205, 357, 557
TauI GCSGC 3 cut(s) 52, 672, 694
TfiI GAWTC 3 cut(s) 63, 517, 776
Tru1I TTAA 3 cut(s) 336, 510, 825
Tru9I TTAA 3 cut(s) 336, 510, 825
TscAI CASTG 2 cut(s) 643, 736
TseFI GTSAC 2 cut(s) 304, 398
TseI GCWGC 1 cut(s) 859
Tsp45I GTSAC 2 cut(s) 304, 398
TspDTI ATGAA 6 cut(s) 142, 551, 633, 807, 828, 948
TspGWI ACGGA 1 cut(s) 933
TspRI CASTG 2 cut(s) 643, 736
VneI GTGCAC 1 cut(s) 608
VpaK11BI GGWCC 1 cut(s) 848
XapI RAATTY 2 cut(s) 7, 205
XmiI GTMKAC 1 cut(s) 834
XmnI GAANNNNTTC 1 cut(s) 798
XspI CTAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.