FvH4_6g51360
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000371
Physical Location & Seq
Forward (+)
38080652 .. 38081704
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51360.t1

Sequence Viewer

Length: 1053 bp
ATGTCGATTGTAATGCCAAAGGGTTTCAGGTTCCATCCGAAGGATTATGAGTTGGTGAACTATTACCTGTATGGCAAGGTGAATGGGGAAGAGTCTGTATCTCCACCACCATACCTAAAGTTGCCTGAGGTTGACATCTATGGCGAAGAGCCTTGGGAGATTTGGGAGAGATTCGAACGGCAAGACGAAGAATCCTTGTATTTCTTTGCGATTCACAGGAAGTTAAACCCCAAAGGTAAGCGGATTGATCGTAGGACAAACTTAGGGACATGGAGTGAGGGTGAAAGATCAAGACCAGTTGATGATGAGAATGGGAAACCTATTGGGACGAAGAGGAAATTCCGGTATGAGAGTGATGATTCTTTGCACCATGCTGCTTGGCATATGGAAGAGTACAGCAGCAATTTCTCTCCCCATTGGGTGATTTGTCATCTCAAAAAGAACAAACGCTCATCCGAATCCAAGAAGACCAAGGATACGTTATGTGAATATGATCCTCCAAGATTGAGAGGGATGAAGTGCAATAAGAGGAAGAATAACAAAGACTACCCATCAACCTCCATTATGCCAAAGAGCAAGAGGTTAAGGAAAGTCGATAACCAAGTTGTGGAGAACTCTTCGGTAAAGGAGAAGGATTTACCACAAAGTTCAGGTGGCGCTAATGACCAGCAATTCAGTATGCCCGGCAACAACAACTACTTTGAGAATGGCTTACAACAGATTTCAACTACTACTAGCAGTACTAACGGTAAGGATCAACAATTCTGTACTGCGGATCTTGGTAACTTCATGCCAATTAGTGATGTAAATGTGGTCGATAGTACGTACACCCCATGCAATAACAACTACTACAACTATGAGAAGGACTTTCAGCAAAGCTCAACTACTACTTGTAGTACCTATGAGCATATCAATAGTACCAGTAACTTAGACTTCGTTGTTGGTCATGATGATGGTAATGTCATACCGATCAATGATGCAAAAGGTGACGATCCCAACTCTTGGTACAATCTATGGAACACCCTACTAACGGAGGATTACAGTGGCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

351

Amino Acids

40.52

Weight (kDa)

5.91

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 6 - 133 1.1e-26 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 607, 1002
AciI CCGC 2 cut(s) 241, 773
AclWI GGATC 4 cut(s) 488, 762, 783, 986
AcsI RAATTY 1 cut(s) 338
AfaI GTAC 8 cut(s) 395, 742, 769, 823, 827, 898, 919, 1007
AfiI CCNNNNNNNGG 4 cut(s) 40, 607, 1002, 1030
AgsI TTSAA 1 cut(s) 726
AluBI AGCT 1 cut(s) 879
AluI AGCT 1 cut(s) 879
AlwI GGATC 4 cut(s) 488, 762, 783, 986
AlwNI CAGNNNCTG 1 cut(s) 1047
ApeKI GCWGC 3 cut(s) 374, 399, 1047
ApoI RAATTY 1 cut(s) 338
AspLEI GCGC 1 cut(s) 659
AsuC2I CCSGG 1 cut(s) 684
AsuHPI GGTGA 5 cut(s) 67, 91, 293, 433, 998
AsuII TTCGAA 1 cut(s) 174
AxyI CCTNAGG 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 473
BbvI GCAGC 3 cut(s) 361, 411, 1034
BccI CCATC 3 cut(s) 42, 559, 947
BceAI ACGGC 1 cut(s) 194
BcgI CGANNNNNNTGC 1 cut(s) 29
BciVI GTATCC 1 cut(s) 469
BcnI CCSGG 1 cut(s) 684
BfaI CTAG 2 cut(s) 735, 1051
BfoI RGCGCY 1 cut(s) 660
BfuI GTATCC 1 cut(s) 469
BisI GCNGC 3 cut(s) 375, 400, 1048
BlsI GCNGC 3 cut(s) 376, 401, 1049
BmcAI AGTACT 1 cut(s) 742
Bme1390I CCNGG 1 cut(s) 684
BmiI GGNNCC 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 684
BmsI GCATC 1 cut(s) 967
BpiI GAAGAC 1 cut(s) 473
Bpu14I TTCGAA 1 cut(s) 174
BpuMI CCSGG 1 cut(s) 684
BsaAI YACGTR 1 cut(s) 825
BsaJI CCNNGG 2 cut(s) 152, 471
BsaWI WCCGGW 1 cut(s) 342
BsaXI ACNNNNNCTCC 2 cut(s) 265, 295
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 607, 1002, 1030
Bse1I ACTGG 2 cut(s) 296, 921
Bse21I CCTNAGG 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 152, 471
BseGI GGATG 3 cut(s) 34, 452, 519
BseLI CCNNNNNNNGG 4 cut(s) 40, 607, 1002, 1030
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 2 cut(s) 296, 921
BseXI GCAGC 3 cut(s) 361, 411, 1034
BsiSI CCGG 2 cut(s) 343, 684
BslFI GGGAC 2 cut(s) 280, 340
BslI CCNNNNNNNGG 4 cut(s) 40, 607, 1002, 1030
BsmFI GGGAC 2 cut(s) 280, 340
Bsp119I TTCGAA 1 cut(s) 174
Bsp143I GATC 7 cut(s) 247, 287, 493, 754, 775, 969, 991
BspACI CCGC 2 cut(s) 241, 773
BspCNI CTCAG 1 cut(s) 118
BspHI TCATGA 1 cut(s) 946
BspLI GGNNCC 1 cut(s) 32
BspPI GGATC 4 cut(s) 488, 762, 783, 986
BspQI GCTCTTC 1 cut(s) 141
BspT104I TTCGAA 1 cut(s) 174
BsrI ACTGG 2 cut(s) 296, 921
BssECI CCNNGG 2 cut(s) 152, 471
BssMI GATC 7 cut(s) 247, 287, 493, 754, 775, 969, 991
BssT1I CCWWGG 2 cut(s) 152, 471
Bst4CI ACNGT 2 cut(s) 749, 1043
Bst6I CTCTTC 5 cut(s) 84, 141, 326, 384, 622
BstBAI YACGTR 1 cut(s) 825
BstBI TTCGAA 1 cut(s) 174
BstDEI CTNAG 3 cut(s) 126, 262, 928
BstF5I GGATG 3 cut(s) 34, 452, 519
BstH2I RGCGCY 1 cut(s) 660
BstHHI GCGC 1 cut(s) 659
BstKTI GATC 7 cut(s) 250, 290, 496, 757, 778, 972, 994
BstMBI GATC 7 cut(s) 247, 287, 493, 754, 775, 969, 991
BstSCI CCNGG 1 cut(s) 682
BstSNI TACGTA 1 cut(s) 825
BstV1I GCAGC 3 cut(s) 361, 411, 1034
BstV2I GAAGAC 1 cut(s) 473
BstX2I RGATCY 1 cut(s) 775
BstYI RGATCY 1 cut(s) 775
Bsu36I CCTNAGG 1 cut(s) 126
BsuI GTATCC 1 cut(s) 469
BtsCI GGATG 3 cut(s) 34, 452, 519
BtsIMutI CAGTG 1 cut(s) 1048
CaiI CAGNNNCTG 1 cut(s) 1047
CciI TCATGA 1 cut(s) 946
CfoI GCGC 1 cut(s) 659
Csp6I GTAC 8 cut(s) 394, 741, 768, 822, 826, 897, 918, 1006
CviAII CATG 5 cut(s) 270, 371, 790, 834, 947
CviJI RGCY 4 cut(s) 151, 711, 879, 1047
CviKI_1 RGCY 4 cut(s) 151, 711, 879, 1047
CviQI GTAC 8 cut(s) 394, 741, 768, 822, 826, 897, 918, 1006
DdeI CTNAG 3 cut(s) 126, 262, 928
DpnI GATC 7 cut(s) 249, 289, 495, 756, 777, 971, 993
DpnII GATC 7 cut(s) 247, 287, 493, 754, 775, 969, 991
Eam1104I CTCTTC 5 cut(s) 84, 141, 326, 384, 622
EarI CTCTTC 5 cut(s) 84, 141, 326, 384, 622
Eco105I TACGTA 1 cut(s) 825
Eco130I CCWWGG 2 cut(s) 152, 471
Eco81I CCTNAGG 1 cut(s) 126
EcoT14I CCWWGG 2 cut(s) 152, 471
ErhI CCWWGG 2 cut(s) 152, 471
FaeI CATG 5 cut(s) 273, 374, 793, 837, 950
FaqI GGGAC 2 cut(s) 280, 340
FatI CATG 5 cut(s) 269, 370, 789, 833, 946
FauNDI CATATG 1 cut(s) 384
Fnu4HI GCNGC 3 cut(s) 375, 400, 1048
FokI GGATG 3 cut(s) 21, 439, 526
Fsp4HI GCNGC 3 cut(s) 375, 400, 1048
FspBI CTAG 2 cut(s) 735, 1051
GlaI GCGC 1 cut(s) 658
GluI GCNGC 3 cut(s) 375, 400, 1048
HaeII RGCGCY 1 cut(s) 660
HapII CCGG 2 cut(s) 343, 684
HhaI GCGC 1 cut(s) 659
Hin1II CATG 5 cut(s) 273, 374, 793, 837, 950
Hin6I GCGC 1 cut(s) 657
HinP1I GCGC 1 cut(s) 657
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 6 cut(s) 92, 171, 191, 211, 359, 458
HpaII CCGG 2 cut(s) 343, 684
HphI GGTGA 5 cut(s) 67, 91, 293, 433, 998
Hpy166II GTNNAC 3 cut(s) 58, 133, 828
Hpy188I TCNGA 2 cut(s) 39, 457
Hpy188III TCNNGA 2 cut(s) 291, 947
Hpy8I GTNNAC 3 cut(s) 58, 133, 828
HpyAV CCTTC 3 cut(s) 34, 625, 856
HpyCH4III ACNGT 2 cut(s) 749, 1043
HpyCH4IV ACGT 2 cut(s) 479, 824
HpyCH4V TGCA 4 cut(s) 367, 522, 837, 980
HpyF3I CTNAG 3 cut(s) 126, 262, 928
HpySE526I ACGT 2 cut(s) 479, 824
Hsp92II CATG 5 cut(s) 273, 374, 793, 837, 950
HspAI GCGC 1 cut(s) 657
Kzo9I GATC 7 cut(s) 247, 287, 493, 754, 775, 969, 991
LguI GCTCTTC 1 cut(s) 141
Lsp1109I GCAGC 3 cut(s) 361, 411, 1034
LweI GCATC 1 cut(s) 967
MaeI CTAG 2 cut(s) 735, 1051
MaeII ACGT 2 cut(s) 479, 824
MaeIII GTNAC 3 cut(s) 782, 923, 986
MalI GATC 7 cut(s) 249, 289, 495, 756, 777, 971, 993
MboI GATC 7 cut(s) 247, 287, 493, 754, 775, 969, 991
MboII GAAGA 8 cut(s) 101, 158, 200, 343, 401, 478, 544, 609
MflI RGATCY 1 cut(s) 775
MluCI AATT 5 cut(s) 338, 403, 671, 761, 795
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 9 cut(s) 121, 271, 327, 503, 507, 522, 568, 573, 1027
MseI TTAA 2 cut(s) 224, 584
MslI CAYNNNNRTG 1 cut(s) 951
MspI CCGG 2 cut(s) 343, 684
MspR9I CCNGG 1 cut(s) 684
NciI CCSGG 1 cut(s) 684
NdeI CATATG 1 cut(s) 384
NdeII GATC 7 cut(s) 247, 287, 493, 754, 775, 969, 991
NlaIII CATG 5 cut(s) 273, 374, 793, 837, 950
NlaIV GGNNCC 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 986
NspV TTCGAA 1 cut(s) 174
PagI TCATGA 1 cut(s) 946
PciSI GCTCTTC 1 cut(s) 141
PfeI GAWTC 5 cut(s) 171, 191, 211, 359, 458
PflMI CCANNNNNTGG 2 cut(s) 607, 1002
PkrI GCNGC 3 cut(s) 376, 401, 1049
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
Ppu21I YACGTR 1 cut(s) 825
PspN4I GGNNCC 1 cut(s) 32
PstNI CAGNNNCTG 1 cut(s) 1047
PsuI RGATCY 1 cut(s) 775
RsaI GTAC 8 cut(s) 395, 742, 769, 823, 827, 898, 919, 1007
RsaNI GTAC 8 cut(s) 394, 741, 768, 822, 826, 897, 918, 1006
RseI CAYNNNNRTG 1 cut(s) 951
SapI GCTCTTC 1 cut(s) 141
SaqAI TTAA 2 cut(s) 224, 584
SatI GCNGC 3 cut(s) 375, 400, 1048
Sau3AI GATC 7 cut(s) 247, 287, 493, 754, 775, 969, 991
ScaI AGTACT 1 cut(s) 742
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 684
SfaNI GCATC 1 cut(s) 967
SfuI TTCGAA 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 951
SnaBI TACGTA 1 cut(s) 825
Sse9I AATT 5 cut(s) 338, 403, 671, 761, 795
SsiI CCGC 2 cut(s) 241, 773
SspMI CTAG 2 cut(s) 735, 1051
StyD4I CCNGG 1 cut(s) 682
StyI CCWWGG 2 cut(s) 152, 471
TaaI ACNGT 2 cut(s) 749, 1043
TaiI ACGT 2 cut(s) 482, 827
TaqI TCGA 4 cut(s) 5, 174, 594, 816
TasI AATT 5 cut(s) 338, 403, 671, 761, 795
TatI WGTACW 3 cut(s) 393, 740, 767
TfiI GAWTC 5 cut(s) 171, 191, 211, 359, 458
Tru1I TTAA 2 cut(s) 224, 584
Tru9I TTAA 2 cut(s) 224, 584
TscAI CASTG 1 cut(s) 1048
TseFI GTSAC 1 cut(s) 986
TseI GCWGC 3 cut(s) 374, 399, 1047
Tsp45I GTSAC 1 cut(s) 986
TspDTI ATGAA 2 cut(s) 530, 778
TspGWI ACGGA 1 cut(s) 1046
TspRI CASTG 1 cut(s) 1048
Van91I CCANNNNNTGG 2 cut(s) 607, 1002
XapI RAATTY 1 cut(s) 338
XspI CTAG 2 cut(s) 735, 1051
ZrmI AGTACT 1 cut(s) 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.