Rh7BG424100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000371
Physical Location & Seq
Forward (+)
48301494 .. 48302534
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG424100.1

Sequence Viewer

Length: 774 bp
ATGGAGGAGTATAGCACTGTTGATGATCACTCCAGTTCTTCTTCTGCACATGTTGATTATGTGATTTGCCGACTTCGACAGAACAACACCAACAGATCATCAGCATCTGGACAAAGAGGATTAATAAGCAATAATAATGATAACAAGAGGAAGTCTCAAGATGATGATGATCATCACCCAAAGCCAAGGAAAAAACCCAAGTCTTTGACAGTTCCTGATCCACAACCTGCTTTTACAACCGATGAGGCTAGAAAGACAGTGTCTTTGAACCAGAGTCCTAATCCTGAGCAGAAATTTGATACTGCGGAAATGTTCTATGATGAGCTGTTTGGCAATGATGATGAGAAGATGGTTGCTCATGATCAGGAATATGAGACTCTGCATTTGCTGTTAGAGGGAGTAGAAGGGGATACACTATCCCCTGCCCTTTCAGAACACCAAACATCATCATCACTGACCTCACAGATGCAGGCCCATCCTTCCGAAGAAAATACATATACAGTACCATCTTTACCTCACATTGATTCAGAATGGCAACAACCAATAGATCAAAATCGGTTGGTTATTAGTGAGGCACAAGTCAGCAATGAAGATGAAGCATTTATTTTTGCCTTTGATGATATCATTATTCCTATGGATCATGCCTACATCAACTCTGATGAATTCAGCAACTACAACTTTGGAGATGAGTTCTTGTCGGGAGGGGATGACATTGGTACAGCTGATATACTACCACTCTCATCATCATTCCCACAGCTGCTTGGAGATCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

257

Amino Acids

28.83

Weight (kDa)

4.33

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 235
AciI CCGC 1 cut(s) 305
AclWI GGATC 2 cut(s) 212, 645
AcsI RAATTY 2 cut(s) 293, 662
AfaI GTAC 2 cut(s) 504, 718
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 1 cut(s) 268
AluBI AGCT 3 cut(s) 325, 722, 757
AluI AGCT 3 cut(s) 325, 722, 757
Alw26I GTCTC 2 cut(s) 159, 368
AlwI GGATC 2 cut(s) 212, 645
AlwNI CAGNNNCTG 2 cut(s) 107, 215
AoxI GGCC 1 cut(s) 471
ApeKI GCWGC 1 cut(s) 757
ApoI RAATTY 2 cut(s) 293, 662
ArsI GACNNNNNNTTYG 4 cut(s) 247, 279, 367, 399
AseI ATTAAT 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 472
AsuHPI GGTGA 1 cut(s) 167
BbvI GCAGC 1 cut(s) 744
BccI CCATC 3 cut(s) 343, 483, 514
BciVI GTATCC 1 cut(s) 403
BclI TGATCA 3 cut(s) 25, 169, 361
BcoDI GTCTC 2 cut(s) 159, 368
BfaI CTAG 1 cut(s) 249
BfmI CTRYAG 1 cut(s) 770
BfuAI ACCTGC 1 cut(s) 235
BfuI GTATCC 1 cut(s) 403
BglII AGATCT 1 cut(s) 766
BisI GCNGC 1 cut(s) 758
BlsI GCNGC 1 cut(s) 759
BmgT120I GGNCC 1 cut(s) 472
BmsI GCATC 2 cut(s) 113, 456
BplI GAGNNNNNCTC 2 cut(s) 139, 171
BpmI CTGGAG 1 cut(s) 16
Bpu10I CCTNAGC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 141
BsaBI GATNNNNATC 3 cut(s) 168, 171, 552
BsaJI CCNNGG 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 33
Bse3DI GCAATG 2 cut(s) 340, 592
Bse8I GATNNNNATC 3 cut(s) 168, 171, 552
BseDI CCNNGG 1 cut(s) 185
BseGI GGATG 2 cut(s) 475, 712
BseJI GATNNNNATC 3 cut(s) 168, 171, 552
BseMI GCAATG 2 cut(s) 340, 592
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 744
BsgI GTGCAG 1 cut(s) 30
BshFI GGCC 1 cut(s) 473
BsmAI GTCTC 2 cut(s) 159, 368
BsnI GGCC 1 cut(s) 473
Bsp143I GATC 8 cut(s) 25, 95, 169, 217, 361, 547, 637, 766
BspACI CCGC 1 cut(s) 305
BspANI GGCC 1 cut(s) 473
BspCNI CTCAG 1 cut(s) 277
BspHI TCATGA 1 cut(s) 358
BspMI ACCTGC 1 cut(s) 235
BspPI GGATC 2 cut(s) 212, 645
BsrDI GCAATG 2 cut(s) 340, 592
BsrI ACTGG 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 8 cut(s) 25, 95, 169, 217, 361, 547, 637, 766
BssT1I CCWWGG 1 cut(s) 185
Bst4CI ACNGT 4 cut(s) 19, 211, 259, 502
BstC8I GCNNGC 1 cut(s) 471
BstDEI CTNAG 1 cut(s) 285
BstF5I GGATG 2 cut(s) 475, 712
BstKTI GATC 8 cut(s) 28, 98, 172, 220, 364, 550, 640, 769
BstMAI GTCTC 2 cut(s) 159, 368
BstMBI GATC 8 cut(s) 25, 95, 169, 217, 361, 547, 637, 766
BstNSI RCATGY 1 cut(s) 53
BstSFI CTRYAG 1 cut(s) 770
BstV1I GCAGC 1 cut(s) 744
BstX2I RGATCY 1 cut(s) 766
BstYI RGATCY 1 cut(s) 766
BsuI GTATCC 1 cut(s) 403
BsuRI GGCC 1 cut(s) 473
BtsCI GGATG 2 cut(s) 475, 712
BtsIMutI CAGTG 3 cut(s) 15, 264, 452
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 471
CaiI CAGNNNCTG 2 cut(s) 107, 215
CciI TCATGA 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 472
Csp6I GTAC 2 cut(s) 503, 717
CviAII CATG 3 cut(s) 50, 359, 641
CviJI RGCY 6 cut(s) 184, 248, 325, 473, 722, 757
CviKI_1 RGCY 6 cut(s) 184, 248, 325, 473, 722, 757
CviQI GTAC 2 cut(s) 503, 717
DdeI CTNAG 1 cut(s) 285
DpnI GATC 8 cut(s) 27, 97, 171, 219, 363, 549, 639, 768
DpnII GATC 8 cut(s) 25, 95, 169, 217, 361, 547, 637, 766
Eco130I CCWWGG 1 cut(s) 185
Eco32I GATATC 1 cut(s) 622
EcoRI GAATTC 1 cut(s) 662
EcoRV GATATC 1 cut(s) 622
EcoT14I CCWWGG 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 185
FaeI CATG 3 cut(s) 53, 362, 644
FatI CATG 3 cut(s) 49, 358, 640
FbaI TGATCA 3 cut(s) 25, 169, 361
Fnu4HI GCNGC 1 cut(s) 758
FokI GGATG 2 cut(s) 462, 719
Fsp4HI GCNGC 1 cut(s) 758
FspBI CTAG 1 cut(s) 249
GluI GCNGC 1 cut(s) 758
GsuI CTGGAG 1 cut(s) 16
HaeIII GGCC 1 cut(s) 473
Hin1II CATG 3 cut(s) 53, 362, 644
HinfI GANTC 3 cut(s) 274, 376, 524
HphI GGTGA 1 cut(s) 167
Hpy188I TCNGA 4 cut(s) 433, 484, 529, 658
Hpy188III TCNNGA 7 cut(s) 108, 158, 215, 284, 359, 365, 699
HpyAV CCTTC 2 cut(s) 398, 489
HpyCH4III ACNGT 4 cut(s) 19, 211, 259, 502
HpyCH4V TGCA 3 cut(s) 47, 382, 469
HpyF3I CTNAG 1 cut(s) 285
Hsp92II CATG 3 cut(s) 53, 362, 644
Ksp22I TGATCA 3 cut(s) 25, 169, 361
Kzo9I GATC 8 cut(s) 25, 95, 169, 217, 361, 547, 637, 766
LpnPI CCDG 9 cut(s) 46, 93, 228, 240, 284, 297, 350, 435, 455
Lsp1109I GCAGC 1 cut(s) 744
LweI GCATC 2 cut(s) 113, 456
MaeI CTAG 1 cut(s) 249
MalI GATC 8 cut(s) 27, 97, 171, 219, 363, 549, 639, 768
MboI GATC 8 cut(s) 25, 95, 169, 217, 361, 547, 637, 766
MboII GAAGA 5 cut(s) 30, 33, 358, 497, 602
MflI RGATCY 1 cut(s) 766
MluCI AATT 2 cut(s) 293, 662
MlyI GAGTC 2 cut(s) 283, 370
MnlI CCTC 8 cut(s) 110, 141, 238, 388, 469, 525, 565, 695
MseI TTAA 1 cut(s) 122
MspA1I CMGCKG 2 cut(s) 722, 757
NdeII GATC 8 cut(s) 25, 95, 169, 217, 361, 547, 637, 766
NlaIII CATG 3 cut(s) 53, 362, 644
NspI RCATGY 1 cut(s) 53
PagI TCATGA 1 cut(s) 358
PciI ACATGT 1 cut(s) 49
PfeI GAWTC 1 cut(s) 524
PflFI GACNNNGTC 1 cut(s) 259
PkrI GCNGC 1 cut(s) 759
PleI GAGTC 2 cut(s) 282, 370
PpsI GAGTC 2 cut(s) 282, 370
PscI ACATGT 1 cut(s) 49
PshBI ATTAAT 1 cut(s) 122
PspPI GGNCC 1 cut(s) 472
PstNI CAGNNNCTG 2 cut(s) 107, 215
PsuI RGATCY 1 cut(s) 766
PsyI GACNNNGTC 1 cut(s) 259
PvuII CAGCTG 2 cut(s) 722, 757
RsaI GTAC 2 cut(s) 504, 718
RsaNI GTAC 2 cut(s) 503, 717
SaqAI TTAA 1 cut(s) 122
SatI GCNGC 1 cut(s) 758
Sau3AI GATC 8 cut(s) 25, 95, 169, 217, 361, 547, 637, 766
Sau96I GGNCC 1 cut(s) 472
SchI GAGTC 2 cut(s) 283, 370
SetI ASST 6 cut(s) 229, 327, 461, 517, 724, 759
SfaNI GCATC 2 cut(s) 113, 456
SfcI CTRYAG 1 cut(s) 770
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 2 cut(s) 293, 662
SsiI CCGC 1 cut(s) 305
SspMI CTAG 1 cut(s) 249
StyI CCWWGG 1 cut(s) 185
TaaI ACNGT 4 cut(s) 19, 211, 259, 502
TaqI TCGA 1 cut(s) 76
TasI AATT 2 cut(s) 293, 662
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TscAI CASTG 3 cut(s) 22, 264, 459
TseI GCWGC 1 cut(s) 757
TspDTI ATGAA 3 cut(s) 603, 609, 675
TspRI CASTG 3 cut(s) 22, 264, 459
Tth111I GACNNNGTC 1 cut(s) 259
VspI ATTAAT 1 cut(s) 122
XapI RAATTY 2 cut(s) 293, 662
XceI RCATGY 1 cut(s) 53
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.