pycom11g06280
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000371
Physical Location & Seq
Reverse (-)
4822598 .. 4823467
870 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g06280.1

Sequence Viewer

Length: 870 bp
ATGGCGAATTTCTACGGCAATGGGCTTGTGCGTTCTTACGGCGACGTGCCGCTGGGTTTTCGATTCCGTCCAACCGATCAAGAACTGGTCGGTTTCTATCTTTCCAACAGAGTCGTCGCCGGAGAGCAGTTTATGGCGTACTGCCGGAGCTTCTTGCACGAGTTCGACCCCTTCGGGGAGACGGAACCGTGGGTTATCTGGGACAATTTCGGCGGACGTTCCCTTGTGGATCAAGACTTGTACTTGTTCTACGAACTGCATTATCTGCCGTCGAACTACATCAAACGCACCATTGACGCCGGAGGCACCTGGAGCCAAAGCTCATATAAGACGGTTAAGGATTTTGACGGAAAATCAATTGGAGATAAGAGGTGCTTCAAGTATAAGAACGAGGGATGTGAACAGGACTGTGGCTGGCTCCTAGAAGAATACATTCTTAATCAAACCCAAGAAATCTTTGATGGCAATGGCTCCGATCATAAAGCCCGAAAGGTTGTTCTTTGCCGGCTTAAAAAGAATCCGAGGTGCGCGAACAAGATAGATCATCCAACCCAAGAATTGAAGGAGAAACCGGAGAACAAGAGAGCAAGGATAAGTAGTTCTCTTGTGCAATTTGATGAAAGAAATAAGAAGATCAGTGGAACTAATCAAGATCAGGAGTGCAAGAGCGGCATTGACCTTAATGCAATGCCGCCAGATTTTTCAGATCATGATTGTCTCACGACGACCAGTGGCGTTTGTTCTTGTCCGATATGCTTGGATGGCGGAGGTGGTGAACCGCTTTTGGAGGATGAAGACGATGAAGATTCGCTTAAAGACGTCGACTTATCGTTAGGACCAAAGGTGCTGCCTCAGTTTGACGAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

290

Amino Acids

32.83

Weight (kDa)

4.82

Isoelectric Point (pI)

47.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 17 - 145 8.8e-16 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 822
AccB1I GGYRCC 1 cut(s) 305
AccBSI CCGCTC 1 cut(s) 669
AccI GTMKAC 1 cut(s) 822
AccII CGCG 1 cut(s) 530
AciI CCGC 6 cut(s) 50, 213, 669, 692, 765, 779
AclWI GGATC 1 cut(s) 237
AcsI RAATTY 1 cut(s) 7
AcyI GRCGYC 2 cut(s) 297, 819
AfaI GTAC 2 cut(s) 140, 242
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 2 cut(s) 379, 562
AjiI CACGTC 1 cut(s) 46
AjnI CCWGG 1 cut(s) 308
AloI GAACNNNNNNTCC 2 cut(s) 583, 615
AluBI AGCT 2 cut(s) 150, 321
AluI AGCT 2 cut(s) 150, 321
Alw26I GTCTC 2 cut(s) 173, 722
AlwI GGATC 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 847
ApoI RAATTY 1 cut(s) 7
Asp700I GAANNNNTTC 1 cut(s) 432
AspLEI GCGC 1 cut(s) 530
AspS9I GGNCC 1 cut(s) 836
AsuHPI GGTGA 1 cut(s) 785
AvaII GGWCC 1 cut(s) 836
BanI GGYRCC 1 cut(s) 305
BauI CACGAG 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 801
BbvI GCAGC 1 cut(s) 834
BccI CCATC 2 cut(s) 455, 755
BceAI ACGGC 3 cut(s) 31, 55, 253
BciT130I CCWGG 1 cut(s) 310
BcoDI GTCTC 2 cut(s) 173, 722
BfaI CTAG 1 cut(s) 422
BisI GCNGC 4 cut(s) 50, 670, 692, 848
BlsI GCNGC 4 cut(s) 51, 671, 693, 849
Bme1390I CCNGG 1 cut(s) 310
Bme18I GGWCC 1 cut(s) 836
BmgBI CACGTC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 836
BmiI GGNNCC 5 cut(s) 186, 307, 314, 419, 472
BmrFI CCNGG 1 cut(s) 310
BpiI GAAGAC 1 cut(s) 801
BpmI CTGGAG 1 cut(s) 331
BsaHI GRCGYC 2 cut(s) 297, 819
BsaJI CCNNGG 2 cut(s) 188, 521
BsaWI WCCGGW 1 cut(s) 571
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse118I RCCGGY 1 cut(s) 504
Bse1I ACTGG 2 cut(s) 90, 729
Bse3DI GCAATG 3 cut(s) 25, 472, 693
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 2 cut(s) 188, 521
BseGI GGATG 4 cut(s) 401, 544, 766, 796
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMI GCAATG 3 cut(s) 25, 472, 693
BseMII CTCAG 1 cut(s) 866
BseNI ACTGG 2 cut(s) 90, 729
BseXI GCAGC 1 cut(s) 834
BseYI CCCAGC 1 cut(s) 52
Bsh1236I CGCG 1 cut(s) 530
BshNI GGYRCC 1 cut(s) 305
BsiSI CCGG 5 cut(s) 120, 145, 300, 505, 572
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 2 cut(s) 173, 722
BsmBI CGTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 215
Bsp143I GATC 7 cut(s) 76, 229, 475, 541, 633, 652, 706
BspACI CCGC 6 cut(s) 50, 213, 669, 692, 765, 779
BspCNI CTCAG 1 cut(s) 865
BspFNI CGCG 1 cut(s) 530
BspHI TCATGA 1 cut(s) 709
BspLI GGNNCC 5 cut(s) 186, 307, 314, 419, 472
BspPI GGATC 1 cut(s) 237
BspT107I GGYRCC 1 cut(s) 305
BsrBI CCGCTC 1 cut(s) 669
BsrDI GCAATG 3 cut(s) 25, 472, 693
BsrFI RCCGGY 1 cut(s) 504
BsrI ACTGG 2 cut(s) 90, 729
BssAI RCCGGY 1 cut(s) 504
BssECI CCNNGG 2 cut(s) 188, 521
BssMI GATC 7 cut(s) 76, 229, 475, 541, 633, 652, 706
BssNI GRCGYC 2 cut(s) 297, 819
BssSI CACGAG 1 cut(s) 158
Bst2BI CACGAG 1 cut(s) 158
Bst2UI CCWGG 1 cut(s) 310
Bst4CI ACNGT 3 cut(s) 189, 334, 410
BstACI GRCGYC 2 cut(s) 297, 819
BstAPI GCANNNNNTGC 1 cut(s) 265
BstC8I GCNNGC 2 cut(s) 416, 506
BstDEI CTNAG 1 cut(s) 852
BstDSI CCRYGG 1 cut(s) 188
BstF5I GGATG 4 cut(s) 401, 544, 766, 796
BstFNI CGCG 1 cut(s) 530
BstHHI GCGC 1 cut(s) 530
BstKTI GATC 7 cut(s) 79, 232, 478, 544, 636, 655, 709
BstMAI GTCTC 2 cut(s) 173, 722
BstMBI GATC 7 cut(s) 76, 229, 475, 541, 633, 652, 706
BstMWI GCNNNNNNNGC 4 cut(s) 265, 312, 669, 762
BstNI CCWGG 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 308
BstUI CGCG 1 cut(s) 530
BstV1I GCAGC 1 cut(s) 834
BstV2I GAAGAC 1 cut(s) 801
BtgI CCRYGG 1 cut(s) 188
BtrI CACGTC 1 cut(s) 46
BtsCI GGATG 4 cut(s) 401, 544, 766, 796
BtsIMutI CAGTG 2 cut(s) 643, 736
Cac8I GCNNGC 2 cut(s) 416, 506
CciI TCATGA 1 cut(s) 709
CfoI GCGC 1 cut(s) 530
Cfr10I RCCGGY 1 cut(s) 504
Cfr13I GGNCC 1 cut(s) 836
CseI GACGC 1 cut(s) 305
Csp6I GTAC 2 cut(s) 139, 241
CviAII CATG 1 cut(s) 710
CviJI RGCY 9 cut(s) 25, 150, 315, 321, 414, 418, 471, 485, 508
CviKI_1 RGCY 9 cut(s) 25, 150, 315, 321, 414, 418, 471, 485, 508
CviQI GTAC 2 cut(s) 139, 241
DdeI CTNAG 1 cut(s) 852
DpnI GATC 7 cut(s) 78, 231, 477, 543, 635, 654, 708
DpnII GATC 7 cut(s) 76, 229, 475, 541, 633, 652, 706
EciI GGCGGA 2 cut(s) 228, 780
Eco47I GGWCC 1 cut(s) 836
EcoRII CCWGG 1 cut(s) 308
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 1 cut(s) 713
FaiI YATR 7 cut(s) 134, 325, 327, 384, 480, 711, 754
FalI AAGNNNNNCTT 4 cut(s) 359, 391, 795, 827
FaqI GGGAC 1 cut(s) 215
FatI CATG 1 cut(s) 709
FblI GTMKAC 1 cut(s) 822
Fnu4HI GCNGC 4 cut(s) 50, 670, 692, 848
FokI GGATG 4 cut(s) 408, 531, 773, 803
Fsp4HI GCNGC 4 cut(s) 50, 670, 692, 848
FspBI CTAG 1 cut(s) 422
GlaI GCGC 1 cut(s) 529
GluI GCNGC 4 cut(s) 50, 670, 692, 848
GsaI CCCAGC 1 cut(s) 56
GsuI CTGGAG 1 cut(s) 331
HapII CCGG 5 cut(s) 120, 145, 300, 505, 572
HgaI GACGC 1 cut(s) 305
HhaI GCGC 1 cut(s) 530
Hin1I GRCGYC 2 cut(s) 297, 819
Hin1II CATG 1 cut(s) 713
Hin6I GCGC 1 cut(s) 528
HinP1I GCGC 1 cut(s) 528
HincII GTYRAC 1 cut(s) 823
HindII GTYRAC 1 cut(s) 823
HinfI GANTC 4 cut(s) 63, 111, 517, 806
HpaII CCGG 5 cut(s) 120, 145, 300, 505, 572
HphI GGTGA 1 cut(s) 785
Hpy166II GTNNAC 3 cut(s) 401, 776, 823
Hpy188I TCNGA 4 cut(s) 475, 522, 706, 750
Hpy188III TCNNGA 6 cut(s) 80, 233, 650, 656, 710, 721
Hpy8I GTNNAC 3 cut(s) 401, 776, 823
Hpy99I CGWCG 5 cut(s) 47, 119, 274, 727, 824
HpyAV CCTTC 2 cut(s) 181, 556
HpyCH4III ACNGT 3 cut(s) 189, 334, 410
HpyCH4IV ACGT 3 cut(s) 45, 217, 819
HpyCH4V TGCA 5 cut(s) 157, 259, 610, 663, 686
HpyF10VI GCNNNNNNNGC 4 cut(s) 265, 312, 669, 762
HpyF3I CTNAG 1 cut(s) 852
HpySE526I ACGT 3 cut(s) 45, 217, 819
Hsp92I GRCGYC 2 cut(s) 297, 819
Hsp92II CATG 1 cut(s) 713
HspAI GCGC 1 cut(s) 528
KroI GCCGGC 1 cut(s) 504
KroNI GCCGGC 1 cut(s) 506
Kzo9I GATC 7 cut(s) 76, 229, 475, 541, 633, 652, 706
LmnI GCTCC 4 cut(s) 147, 312, 423, 476
Lsp1109I GCAGC 1 cut(s) 834
MaeI CTAG 1 cut(s) 422
MaeII ACGT 3 cut(s) 45, 217, 819
MalI GATC 7 cut(s) 78, 231, 477, 543, 635, 654, 708
MbiI CCGCTC 1 cut(s) 669
MboI GATC 7 cut(s) 76, 229, 475, 541, 633, 652, 706
MboII GAAGA 4 cut(s) 437, 643, 806, 815
MfeI CAATTG 1 cut(s) 357
MluCI AATT 5 cut(s) 7, 205, 357, 557, 611
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 3 cut(s) 95, 129, 572
MnlI CCTC 7 cut(s) 296, 363, 385, 516, 761, 781, 861
MroNI GCCGGC 1 cut(s) 504
MroXI GAANNNNTTC 1 cut(s) 432
MseI TTAA 6 cut(s) 336, 438, 510, 681, 813, 868
MspA1I CMGCKG 1 cut(s) 52
MspI CCGG 5 cut(s) 120, 145, 300, 505, 572
MspR9I CCNGG 1 cut(s) 310
MunI CAATTG 1 cut(s) 357
MvaI CCWGG 1 cut(s) 310
MvnI CGCG 1 cut(s) 530
MwoI GCNNNNNNNGC 4 cut(s) 265, 312, 669, 762
NaeI GCCGGC 1 cut(s) 506
NdeII GATC 7 cut(s) 76, 229, 475, 541, 633, 652, 706
NgoMIV GCCGGC 1 cut(s) 504
NlaIII CATG 1 cut(s) 713
NlaIV GGNNCC 5 cut(s) 186, 307, 314, 419, 472
PagI TCATGA 1 cut(s) 709
PdiI GCCGGC 1 cut(s) 506
PdmI GAANNNNTTC 1 cut(s) 432
PfeI GAWTC 3 cut(s) 63, 517, 806
PkrI GCNGC 4 cut(s) 51, 671, 693, 849
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 308
PspFI CCCAGC 1 cut(s) 52
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 5 cut(s) 186, 307, 314, 419, 472
PspPI GGNCC 1 cut(s) 836
RsaI GTAC 2 cut(s) 140, 242
RsaNI GTAC 2 cut(s) 139, 241
SalI GTCGAC 1 cut(s) 821
SaqAI TTAA 6 cut(s) 336, 438, 510, 681, 813, 868
SatI GCNGC 4 cut(s) 50, 670, 692, 848
Sau3AI GATC 7 cut(s) 76, 229, 475, 541, 633, 652, 706
Sau96I GGNCC 1 cut(s) 836
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 1 cut(s) 310
SinI GGWCC 1 cut(s) 836
Sse9I AATT 5 cut(s) 7, 205, 357, 557, 611
SsiI CCGC 6 cut(s) 50, 213, 669, 692, 765, 779
SspMI CTAG 1 cut(s) 422
StyD4I CCNGG 1 cut(s) 308
TaaI ACNGT 3 cut(s) 189, 334, 410
TaiI ACGT 3 cut(s) 48, 220, 822
TaqI TCGA 4 cut(s) 61, 165, 272, 822
TasI AATT 5 cut(s) 7, 205, 357, 557, 611
TatI WGTACW 1 cut(s) 240
TauI GCSGC 3 cut(s) 52, 672, 694
TfiI GAWTC 3 cut(s) 63, 517, 806
Tru1I TTAA 6 cut(s) 336, 438, 510, 681, 813, 868
Tru9I TTAA 6 cut(s) 336, 438, 510, 681, 813, 868
TscAI CASTG 2 cut(s) 643, 736
TseI GCWGC 1 cut(s) 847
TspDTI ATGAA 3 cut(s) 633, 807, 816
TspGWI ACGGA 3 cut(s) 56, 197, 363
TspRI CASTG 2 cut(s) 643, 736
VpaK11BI GGWCC 1 cut(s) 836
XapI RAATTY 1 cut(s) 7
XmiI GTMKAC 1 cut(s) 822
XmnI GAANNNNTTC 1 cut(s) 432
XspI CTAG 1 cut(s) 422
ZraI GACGTC 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.