Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000371

Physical Location & Seq

Genomic Coordinates Reverse (-)

55409870 .. 55411225

Gene Structure 1356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG282300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGCTGCGTCATCCTCAAGACTTCGGGAGGGTTACCGATTCGACCCCAGAGAGCTTCCGGTGGGTTACCGATTCCACCCAACAGAGGAGGAGTTGGTCGATCACTTCCTCAAGAACAAGATGCAAGGCTACGCCTTCGACGAGGTTCCGGAAGTAGACATCTGCAAGCACGAGCCTTGGGATTTGCCTGGATTTGCAGATCACATTGCAGGAAAATACTCGGCGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

76

Amino Acids

8.77

Weight (kDa)

5.21

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	20 - 66	5.6e-14	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica	MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica	Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis	pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis	RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata	RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora	Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa	Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha	Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana	Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	156
AccIII	TCCGGA	1 cut(s)	148
AciI	CCGC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
Aor13HI	TCCGGA	1 cut(s)	148
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	5
BauI	CACGAG	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	189
BisI	GCNGC	2 cut(s)	6, 225
BlsI	GCNGC	2 cut(s)	7, 226
Bme1390I	CCNGG	1 cut(s)	189
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	176
BsaWI	WCCGGW	2 cut(s)	58, 148
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse3DI	GCAATG	1 cut(s)	204
BseAI	TCCGGA	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	176
BseGI	GGATG	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMI	GCAATG	1 cut(s)	204
BseRI	GAGGAG	2 cut(s)	101, 104
BshFI	GGCC	1 cut(s)	227
BsiSI	CCGG	2 cut(s)	59, 149
BslI	CCNNNNNNNGG	1 cut(s)	85
BsnI	GGCC	1 cut(s)	227
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	100, 199
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	1 cut(s)	227
BspEI	TCCGGA	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	176
BssMI	GATC	2 cut(s)	100, 199
BssSI	CACGAG	1 cut(s)	170
BssT1I	CCWWGG	1 cut(s)	176
Bst2BI	CACGAG	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	167
BstEII	GGTNACC	2 cut(s)	32, 65
BstF5I	GGATG	1 cut(s)	11
BstKTI	GATC	2 cut(s)	103, 202
BstMBI	GATC	2 cut(s)	100, 199
BstNI	CCWGG	1 cut(s)	189
BstPI	GGTNACC	2 cut(s)	32, 65
BstSCI	CCNGG	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	11
Cac8I	GCNNGC	1 cut(s)	167
CviJI	RGCY	5 cut(s)	5, 55, 129, 175, 227
CviKI_1	RGCY	5 cut(s)	5, 55, 129, 175, 227
DpnI	GATC	2 cut(s)	102, 201
DpnII	GATC	2 cut(s)	100, 199
Eco130I	CCWWGG	1 cut(s)	176
Eco91I	GGTNACC	2 cut(s)	32, 65
EcoO65I	GGTNACC	2 cut(s)	32, 65
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	176
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	2 cut(s)	6, 225
Fsp4HI	GCNGC	2 cut(s)	6, 225
GluI	GCNGC	2 cut(s)	6, 225
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	2 cut(s)	59, 149
HinfI	GANTC	2 cut(s)	39, 72
HpaII	CCGG	2 cut(s)	59, 149
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188III	TCNNGA	4 cut(s)	18, 26, 112, 149
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	145
HpyCH4V	TGCA	4 cut(s)	124, 165, 197, 209
Kpn2I	TCCGGA	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	100, 199
LpnPI	CCDG	6 cut(s)	61, 72, 162, 174, 195, 201
LweI	GCATC	1 cut(s)	111
MaeIII	GTNAC	2 cut(s)	32, 65
MalI	GATC	2 cut(s)	102, 201
MboI	GATC	2 cut(s)	100, 199
MnlI	CCTC	6 cut(s)	22, 25, 79, 82, 119, 136
MroI	TCCGGA	1 cut(s)	148
MspI	CCGG	2 cut(s)	59, 149
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
NdeII	GATC	2 cut(s)	100, 199
NlaIV	GGNNCC	1 cut(s)	147
NmeAIII	GCCGAG	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfeI	GAWTC	2 cut(s)	39, 72
PkrI	GCNGC	2 cut(s)	7, 226
Psp6I	CCWGG	1 cut(s)	187
PspEI	GGTNACC	2 cut(s)	32, 65
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	147
SatI	GCNGC	2 cut(s)	6, 225
Sau3AI	GATC	2 cut(s)	100, 199
ScrFI	CCNGG	1 cut(s)	189
SetI	ASST	2 cut(s)	57, 147
SfaNI	GCATC	1 cut(s)	111
SmlI	CTYRAG	2 cut(s)	16, 110
SmoI	CTYRAG	2 cut(s)	16, 110
SsiI	CCGC	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	176
TaqI	TCGA	3 cut(s)	42, 99, 138
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	2 cut(s)	39, 72
TseI	GCWGC	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.