Rw2G026080
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000371
Physical Location & Seq
Reverse (-)
40020167 .. 40021420
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G026080.1

Sequence Viewer

Length: 1254 bp
ATGCCCTCTGCTCTGGTGGGTTTCAGGTTCCACCCAACTGATGAAGAACTGATCAGTTGTTTCCTCTACAACAAGAACAATGTCGGCACAATGGCAGAAGTGCCATCAATGGCTACATACAATTACAACAAAATTATGCCTGAGCTTGACCTTTATGGTGATGTAGAACCATGGCAGATTTGGGAAACGTATGGAGGATCGGAACTGTATGACCAGGATATGTTCTTTTTTACACAGCACAAGACGGTAAACCCCGATGGTTTACGCATTCATCGCAAGGTTGGATCCGGTGGTACTTGGAGTGAAGGAGAACCTGGCAAACTTATTTTTGATCCAAAGCATAAGCAGAAACCTATTGGACAAAAAAGGAAATTTCGATATGAGAATAAAGGGTCTGACCACAATGGTTCTTGGTATTTGGAAGAGTATAGTCTTCTTCTTACTAACTCTGCAAATTATGTACTTTGCCGGCTCCGACAGAACATCAAGACACGAAAGAAGAGGAAGGAGATATTATTGTGCCAAGAATCTAGTGCATTGCCAATGAGTTACATACCTGTAGGGTTCAGGTTCCACCCCACGGATCAAGAGTTGATCAGTTACTTCCTCTACAACAAGCTGACAGAGGATGCATCATTATACAGTTACAAAAACCTTGTGTGCGAGTTTGATCTTTTTGGAACCACAGAACCTTGGGAGATTTGGGACATGTATAGGGGACATGAGTTGTGCAACCAAAACTTGTTCTTTTTCACAAAGCTCAAGAAGGCGAGCCTCAACGGCTCACGCATTCTCCGCAAGATTGGATCAAGTGGGACTTGGAGCGAAACAGATGCCTCCAAATTGATTAAAGATGAGGAATTGCAAAGACATATTGGGCGGAGGAGGAAACTGCGATACGAGAGCAAATGTTCCAAACACCACGGTCATTGGTATTTGGATGAGTATAGTCTTCTAGATGCTAAATCAGATTATGTGATTTGTAGACTGCGAAAGAACAACAAATCACCACTGCCATTGTCTGAATGGAATGGAAACAAGAGAAAGTACAGTGCATTATGCCAAGAATCAAAGGAGAAGCAGAAGCTACTTTCTGTTACTAACAAAAAGCTAATGCGAAAGCAAAGTAATGTGATGGTGAATATAACCAACAACAAGAACAACTTGTCTAACCAGCCAATAGATCAGACAAAGAGGATGGAACCTTGCATAAAATTCAAATTATTTGGTGTAGAGATAGGTTATAACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

417

Amino Acids

48.95

Weight (kDa)

9.24

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 6 - 145 2.1e-20 No apical meristem (NAM) protein
NAM PF02365 186 - 318 4.3e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1245
AccI GTMKAC 1 cut(s) 985
AciI CCGC 2 cut(s) 796, 880
AclWI GGATC 6 cut(s) 205, 279, 292, 326, 591, 814
AcsI RAATTY 2 cut(s) 371, 1214
AfaI GTAC 3 cut(s) 295, 462, 1049
AfiI CCNNNNNNNGG 1 cut(s) 580
AflIII ACRYGT 1 cut(s) 708
AgsI TTSAA 1 cut(s) 1219
AjnI CCWGG 2 cut(s) 213, 313
AluBI AGCT 5 cut(s) 145, 619, 760, 1087, 1111
AluI AGCT 5 cut(s) 145, 619, 760, 1087, 1111
AlwI GGATC 6 cut(s) 205, 279, 292, 326, 591, 814
ApoI RAATTY 2 cut(s) 371, 1214
AsuHPI GGTGA 3 cut(s) 170, 999, 1150
BamHI GGATCC 1 cut(s) 284
BbsI GAAGAC 2 cut(s) 425, 944
BccI CCATC 4 cut(s) 112, 251, 1129, 1192
BceAI ACGGC 1 cut(s) 796
BcgI CGANNNNNNTGC 2 cut(s) 815, 849
BciT130I CCWGG 2 cut(s) 215, 315
BclI TGATCA 2 cut(s) 51, 594
BfaI CTAG 2 cut(s) 531, 956
BfmI CTRYAG 1 cut(s) 558
BglI GCCNNNNNGGC 1 cut(s) 780
Bme1390I CCNGG 2 cut(s) 215, 315
BmiI GGNNCC 6 cut(s) 29, 286, 473, 572, 682, 1203
BmrFI CCNGG 2 cut(s) 215, 315
BmsI GCATC 4 cut(s) 619, 641, 823, 949
BpiI GAAGAC 2 cut(s) 425, 944
Bpu10I CCTNAGC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 746
BsaJI CCNNGG 4 cut(s) 170, 579, 692, 922
BsaWI WCCGGW 1 cut(s) 287
BsaXI ACNNNNNCTCC 2 cut(s) 777, 807
Bsc4I CCNNNNNNNGG 1 cut(s) 580
Bse118I RCCGGY 1 cut(s) 468
Bse3DI GCAATG 1 cut(s) 536
BseBI CCWGG 2 cut(s) 215, 315
BseDI CCNNGG 4 cut(s) 170, 579, 692, 922
BseGI GGATG 3 cut(s) 634, 946, 1203
BseLI CCNNNNNNNGG 1 cut(s) 580
BseMI GCAATG 1 cut(s) 536
BseMII CTCAG 1 cut(s) 132
BseRI GAGGAG 1 cut(s) 898
BsiSI CCGG 2 cut(s) 288, 469
BslFI GGGAC 3 cut(s) 719, 732, 829
BslI CCNNNNNNNGG 1 cut(s) 580
BsmFI GGGAC 3 cut(s) 719, 732, 829
BsmI GAATGC 2 cut(s) 267, 789
Bsp143I GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
Bsp19I CCATGG 1 cut(s) 170
BspACI CCGC 2 cut(s) 796, 880
BspCNI CTCAG 1 cut(s) 133
BspLI GGNNCC 6 cut(s) 29, 286, 473, 572, 682, 1203
BspPI GGATC 6 cut(s) 205, 279, 292, 326, 591, 814
BsrDI GCAATG 1 cut(s) 536
BsrFI RCCGGY 1 cut(s) 468
BssAI RCCGGY 1 cut(s) 468
BssECI CCNNGG 4 cut(s) 170, 579, 692, 922
BssMI GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
BssT1I CCWWGG 2 cut(s) 170, 692
Bst2UI CCWGG 2 cut(s) 215, 315
Bst4CI ACNGT 5 cut(s) 207, 247, 644, 926, 1052
Bst6I CTCTTC 2 cut(s) 417, 494
BstC8I GCNNGC 2 cut(s) 470, 772
BstDEI CTNAG 1 cut(s) 141
BstDSI CCRYGG 3 cut(s) 170, 579, 922
BstF5I GGATG 3 cut(s) 634, 946, 1203
BstKTI GATC 9 cut(s) 54, 200, 287, 334, 586, 597, 673, 809, 1186
BstMBI GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
BstMWI GCNNNNNNNGC 3 cut(s) 273, 780, 795
BstNI CCWGG 2 cut(s) 215, 315
BstNSI RCATGY 1 cut(s) 712
BstSCI CCNGG 2 cut(s) 213, 313
BstSFI CTRYAG 1 cut(s) 558
BstV2I GAAGAC 2 cut(s) 425, 944
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
BtgI CCRYGG 3 cut(s) 170, 579, 922
BtgZI GCGATG 1 cut(s) 257
BtsCI GGATG 3 cut(s) 634, 946, 1203
BtsI GCAGTG 1 cut(s) 1010
BtsIMutI CAGTG 2 cut(s) 1010, 1057
Cac8I GCNNGC 2 cut(s) 470, 772
Cfr10I RCCGGY 1 cut(s) 468
Csp6I GTAC 3 cut(s) 294, 461, 1048
CspCI CAANNNNNGTGG 4 cut(s) 911, 946, 999, 1034
CviAII CATG 3 cut(s) 171, 709, 722
CviQI GTAC 3 cut(s) 294, 461, 1048
DdeI CTNAG 1 cut(s) 141
DpnI GATC 9 cut(s) 53, 199, 286, 333, 585, 596, 672, 808, 1185
DpnII GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
Eam1104I CTCTTC 2 cut(s) 417, 494
EarI CTCTTC 2 cut(s) 417, 494
EciI GGCGGA 1 cut(s) 895
Eco130I CCWWGG 2 cut(s) 170, 692
EcoRII CCWGG 2 cut(s) 213, 313
EcoT14I CCWWGG 2 cut(s) 170, 692
EcoT22I ATGCAT 1 cut(s) 634
ErhI CCWWGG 2 cut(s) 170, 692
FaeI CATG 3 cut(s) 174, 712, 725
FalI AAGNNNNNCTT 4 cut(s) 802, 834, 1148, 1180
FaqI GGGAC 3 cut(s) 719, 732, 829
FatI CATG 3 cut(s) 170, 708, 721
FbaI TGATCA 2 cut(s) 51, 594
FblI GTMKAC 1 cut(s) 985
FokI GGATG 3 cut(s) 641, 953, 1210
FspBI CTAG 2 cut(s) 531, 956
HapII CCGG 2 cut(s) 288, 469
Hin1II CATG 3 cut(s) 174, 712, 725
HinfI GANTC 2 cut(s) 527, 1067
HpaII CCGG 2 cut(s) 288, 469
HphI GGTGA 3 cut(s) 170, 999, 1150
Hpy166II GTNNAC 3 cut(s) 250, 263, 986
Hpy188I TCNGA 6 cut(s) 202, 397, 476, 970, 1024, 1188
Hpy188III TCNNGA 4 cut(s) 487, 587, 763, 956
Hpy8I GTNNAC 3 cut(s) 250, 263, 986
HpyAV CCTTC 3 cut(s) 299, 499, 760
HpyCH4III ACNGT 5 cut(s) 207, 247, 644, 926, 1052
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 7 cut(s) 452, 536, 632, 732, 865, 1055, 1209
HpyF10VI GCNNNNNNNGC 3 cut(s) 273, 780, 795
HpyF3I CTNAG 1 cut(s) 141
HpySE526I ACGT 1 cut(s) 188
Hsp92II CATG 3 cut(s) 174, 712, 725
KroI GCCGGC 1 cut(s) 468
KroNI GCCGGC 1 cut(s) 470
Ksp22I TGATCA 2 cut(s) 51, 594
Kzo9I GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
LmnI GCTCC 2 cut(s) 477, 822
LweI GCATC 4 cut(s) 619, 641, 823, 949
MaeI CTAG 2 cut(s) 531, 956
MaeII ACGT 1 cut(s) 188
MaeIII GTNAC 4 cut(s) 548, 599, 644, 1096
MalI GATC 9 cut(s) 53, 199, 286, 333, 585, 596, 672, 808, 1185
MboI GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
MboII GAAGA 6 cut(s) 56, 425, 428, 434, 511, 944
MflI RGATCY 1 cut(s) 284
MluCI AATT 8 cut(s) 121, 132, 371, 454, 842, 860, 1214, 1220
MmeI TCCRAC 2 cut(s) 262, 499
Mph1103I ATGCAT 1 cut(s) 634
MroNI GCCGGC 1 cut(s) 468
MseI TTAA 1 cut(s) 849
MspI CCGG 2 cut(s) 288, 469
MspR9I CCNGG 2 cut(s) 215, 315
Mva1269I GAATGC 2 cut(s) 267, 789
MvaI CCWGG 2 cut(s) 215, 315
MwoI GCNNNNNNNGC 3 cut(s) 273, 780, 795
NaeI GCCGGC 1 cut(s) 470
NcoI CCATGG 1 cut(s) 170
NdeII GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
NgoMIV GCCGGC 1 cut(s) 468
NlaIII CATG 3 cut(s) 174, 712, 725
NlaIV GGNNCC 6 cut(s) 29, 286, 473, 572, 682, 1203
NsiI ATGCAT 1 cut(s) 634
NspI RCATGY 1 cut(s) 712
PciI ACATGT 1 cut(s) 708
PctI GAATGC 2 cut(s) 267, 789
PdiI GCCGGC 1 cut(s) 470
PfeI GAWTC 2 cut(s) 527, 1067
PscI ACATGT 1 cut(s) 708
PsiI TTATAA 1 cut(s) 1245
Psp6I CCWGG 2 cut(s) 213, 313
PspGI CCWGG 2 cut(s) 213, 313
PspN4I GGNNCC 6 cut(s) 29, 286, 473, 572, 682, 1203
PsuI RGATCY 1 cut(s) 284
RsaI GTAC 3 cut(s) 295, 462, 1049
RsaNI GTAC 3 cut(s) 294, 461, 1048
SaqAI TTAA 1 cut(s) 849
Sau3AI GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
ScrFI CCNGG 2 cut(s) 215, 315
SfaNI GCATC 4 cut(s) 619, 641, 823, 949
SfcI CTRYAG 1 cut(s) 558
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
Sse9I AATT 8 cut(s) 121, 132, 371, 454, 842, 860, 1214, 1220
SsiI CCGC 2 cut(s) 796, 880
SspMI CTAG 2 cut(s) 531, 956
StyD4I CCNGG 2 cut(s) 213, 313
StyI CCWWGG 2 cut(s) 170, 692
TaaI ACNGT 5 cut(s) 207, 247, 644, 926, 1052
TaiI ACGT 1 cut(s) 191
TaqI TCGA 1 cut(s) 376
TasI AATT 8 cut(s) 121, 132, 371, 454, 842, 860, 1214, 1220
TatI WGTACW 2 cut(s) 460, 1047
TfiI GAWTC 2 cut(s) 527, 1067
Tru1I TTAA 1 cut(s) 849
Tru9I TTAA 1 cut(s) 849
TscAI CASTG 2 cut(s) 1017, 1057
TspDTI ATGAA 2 cut(s) 57, 260
TspGWI ACGGA 1 cut(s) 596
TspRI CASTG 2 cut(s) 1017, 1057
XapI RAATTY 2 cut(s) 371, 1214
XbaI TCTAGA 1 cut(s) 955
XceI RCATGY 1 cut(s) 712
XcmI CCANNNNNNNNNTGG 2 cut(s) 177, 1023
XmiI GTMKAC 1 cut(s) 985
XspI CTAG 2 cut(s) 531, 956
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.