FvH4_5g35290
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000371
Physical Location & Seq
Forward (+)
25851927 .. 25853567
1641 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g35290.t1

Sequence Viewer

Length: 1344 bp
ATGGATCCAACGGGTTTCAGATTCCACCCCACTGATCAAGAGCTGATCGGGCACTACCTTTTCATCAAAAACAACTCTGATCCAGTGCCGGAGACGGGATCATATTTGCGGGAGTTTGATATGTACGGTGAGGTAGAGCCGTGGACAATTTGGGAAGCCTATGGTGGACCGCTTCTCGATGACCAGGATCTCTTCTTCTTCACTCGCCTTAAGAAGCACGGCCACAGAATCAATCGAAGAATCGGATCCGGTACTTGGAGCCAAGGCGAGCCCTTCAAATCTGTTTATGCCAAAAACAACCAAGAAACCCCAATTGGGAAAAAGACCAAGTTGAGGTATGAGAACAAAAACGTGACGGAGCAAAGTGGTTGTTGGTTCATGGATGAGTACAGTACTGTTGATTATGATGGTGATTATGTGATTTGCCGACTTCGAGAGAACCCCGGCAAGAGACCATCACCACCACCATCATCAAAGCCTAGTGATAACAAGAGGAAGTGTCAAGCTGAATCAAGGCCTAGCAAAAAGACCAAGTCTTTGAGAGTTTCTGATCCACAGCCTACAATTATAACCAATGAGGCTGGAAAGACAGTGTCTTTGAACCAGAGGCCTAATCCGGAGAAGCAATTTGATCAGTCTTTGAGACTTCCTGTTCCTGATTCACAGGCTATGTTTCTAGAGGGTACTACTGCTGCTGGTCACATTGATTGTGCATTCGACACTGTGGAAATGTTCCATCATGATCAGGAATATGAGACTCAACATTTTCTGTTAGAGGGTAATACTGCTGGTCACAGTGATTATGCATTGGTGGAAGTACAAAGGGATGCATTATCCCCTGCTGCTGTTTCAGAACAACAACACACATGTGCATCATCATTCGCAGAGCCCAATCTTACTGATGATGTGTTTGTGTCTGAAAATGAGAGGGGAAATGAGCAGTTAGAGGATACAGATTGCCTTGGTGTTGCATTGGGGGTTGTAGAAGGGGATACATTATTTTCTGCCCTCTCAGAACAACAAACATCATTAATGTCACAGATGCAGGATATTCCTTCTCAAGAAAACATCATTGAGTCTCATATTCAGTCACCCTATGTGCCTCATCTCGGATCAGAATATCAACAACAAGCAGATACCAATGAAGAAGAATTCGGTTTGGCTTATGATGATGATTTCAGTAATCTTCCTATGGATCCAGCCTACATTAACTCTGATGAATTCAACAACTACATCTTTGGAGACGAGTTCTTGTCGGGAGGGGATGACATTGGTACAGCAGATATAGTACAAGGCTACTCATCATTTTCAGCACTGCTTGAAGATCAAAATCATGAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

448

Amino Acids

50.4

Weight (kDa)

4.49

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 3 - 131 1.3e-21 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 569
AccIII TCCGGA 1 cut(s) 616
AciI CCGC 2 cut(s) 109, 170
AcoI YGGCCR 1 cut(s) 220
AcsI RAATTY 2 cut(s) 1151, 1220
AfaI GTAC 8 cut(s) 125, 253, 389, 394, 685, 819, 1276, 1290
AfiI CCNNNNNNNGG 5 cut(s) 95, 255, 315, 333, 1109
AflII CTTAAG 1 cut(s) 209
AflIII ACRYGT 1 cut(s) 866
AgsI TTSAA 4 cut(s) 277, 601, 1225, 1322
AjnI CCWGG 1 cut(s) 183
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
AleI CACNNNNGTG 1 cut(s) 867
AluBI AGCT 2 cut(s) 43, 506
AluI AGCT 2 cut(s) 43, 506
Alw26I GTCTC 6 cut(s) 86, 445, 637, 749, 1083, 1236
Aor13HI TCCGGA 1 cut(s) 616
AoxI GGCC 3 cut(s) 220, 515, 608
ApeKI GCWGC 2 cut(s) 692, 842
ApoI RAATTY 2 cut(s) 1151, 1220
ArsI GACNNNNNNTTYG 4 cut(s) 520, 552, 580, 612
AseI ATTAAT 1 cut(s) 1031
AspS9I GGNCC 1 cut(s) 167
AsuC2I CCSGG 1 cut(s) 444
AsuHPI GGTGA 4 cut(s) 140, 422, 450, 1083
AvaII GGWCC 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 54
BamHI GGATCC 3 cut(s) 4, 245, 1195
BanII GRGCYC 2 cut(s) 273, 891
BbvI GCAGC 2 cut(s) 679, 829
BccI CCATC 4 cut(s) 401, 463, 475, 744
BceAI ACGGC 2 cut(s) 124, 235
BciT130I CCWGG 1 cut(s) 185
BciVI GTATCC 2 cut(s) 943, 985
BclI TGATCA 3 cut(s) 34, 631, 742
BcnI CCSGG 1 cut(s) 444
BcoDI GTCTC 6 cut(s) 86, 445, 637, 749, 1083, 1236
BfaI CTAG 3 cut(s) 480, 519, 677
BfrI CTTAAG 1 cut(s) 209
BfuI GTATCC 2 cut(s) 943, 985
BisI GCNGC 2 cut(s) 693, 843
BlsI GCNGC 2 cut(s) 694, 844
BmcAI AGTACT 1 cut(s) 394
Bme1390I CCNGG 2 cut(s) 185, 444
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 4 cut(s) 6, 247, 260, 1197
BmrFI CCNGG 2 cut(s) 185, 444
BmsI GCATC 3 cut(s) 817, 881, 1032
BpuEI CTTGAG 1 cut(s) 1044
BpuMI CCSGG 1 cut(s) 444
BsaBI GATNNNNATC 1 cut(s) 1329
BsaI GGTCTC 1 cut(s) 445
BsaJI CCNNGG 4 cut(s) 140, 262, 442, 961
BsaWI WCCGGW 2 cut(s) 248, 616
Bsc4I CCNNNNNNNGG 5 cut(s) 95, 255, 315, 333, 1109
Bse1I ACTGG 1 cut(s) 83
Bse8I GATNNNNATC 1 cut(s) 1329
BseAI TCCGGA 1 cut(s) 616
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 4 cut(s) 140, 262, 442, 961
BseGI GGATG 3 cut(s) 388, 832, 1270
BseJI GATNNNNATC 1 cut(s) 1329
BseLI CCNNNNNNNGG 5 cut(s) 95, 255, 315, 333, 1109
BseMII CTCAG 1 cut(s) 1026
BseNI ACTGG 1 cut(s) 83
BseSI GKGCMC 1 cut(s) 54
BseXI GCAGC 2 cut(s) 679, 829
BshFI GGCC 3 cut(s) 222, 517, 610
BsiSI CCGG 4 cut(s) 89, 249, 444, 617
BslI CCNNNNNNNGG 5 cut(s) 95, 255, 315, 333, 1109
BsmAI GTCTC 6 cut(s) 86, 445, 637, 749, 1083, 1236
BsmBI CGTCTC 2 cut(s) 86, 1236
BsmI GAATGC 1 cut(s) 713
BsnI GGCC 3 cut(s) 222, 517, 610
Bso31I GGTCTC 1 cut(s) 445
Bsp1286I GDGCHC 3 cut(s) 54, 273, 891
Bsp13I TCCGGA 1 cut(s) 616
BspACI CCGC 2 cut(s) 109, 170
BspANI GGCC 3 cut(s) 222, 517, 610
BspCNI CTCAG 1 cut(s) 1025
BspEI TCCGGA 1 cut(s) 616
BspHI TCATGA 2 cut(s) 739, 1333
BspLI GGNNCC 4 cut(s) 6, 247, 260, 1197
BspTI CTTAAG 1 cut(s) 209
BspTNI GGTCTC 1 cut(s) 445
BsrI ACTGG 1 cut(s) 83
BssECI CCNNGG 4 cut(s) 140, 262, 442, 961
BssT1I CCWWGG 2 cut(s) 262, 961
Bst2UI CCWGG 1 cut(s) 185
Bst4CI ACNGT 6 cut(s) 128, 392, 397, 592, 724, 797
Bst6I CTCTTC 1 cut(s) 197
BstAFI CTTAAG 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 269
BstDEI CTNAG 1 cut(s) 1012
BstDSI CCRYGG 1 cut(s) 140
BstF5I GGATG 3 cut(s) 388, 832, 1270
BstMAI GTCTC 6 cut(s) 86, 445, 637, 749, 1083, 1236
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstNI CCWGG 1 cut(s) 185
BstNSI RCATGY 1 cut(s) 870
BstSCI CCNGG 2 cut(s) 183, 442
BstSLI GKGCMC 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 679, 829
BstX2I RGATCY 4 cut(s) 4, 187, 245, 1195
BstYI RGATCY 4 cut(s) 4, 187, 245, 1195
BsuI GTATCC 2 cut(s) 943, 985
BsuRI GGCC 3 cut(s) 222, 517, 610
BtgI CCRYGG 1 cut(s) 140
BtsCI GGATG 3 cut(s) 388, 832, 1270
BtsI GCAGTG 1 cut(s) 1313
BtsIMutI CAGTG 6 cut(s) 30, 90, 597, 720, 802, 1313
Cac8I GCNNGC 1 cut(s) 269
CciI TCATGA 2 cut(s) 739, 1333
Cfr13I GGNCC 1 cut(s) 167
Csp6I GTAC 8 cut(s) 124, 252, 388, 393, 684, 818, 1275, 1289
CviAII CATG 4 cut(s) 379, 740, 867, 1334
CviQI GTAC 8 cut(s) 124, 252, 388, 393, 684, 818, 1275, 1289
DdeI CTNAG 1 cut(s) 1012
EaeI YGGCCR 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Eco130I CCWWGG 2 cut(s) 262, 961
Eco147I AGGCCT 2 cut(s) 517, 610
Eco24I GRGCYC 2 cut(s) 273, 891
Eco31I GGTCTC 1 cut(s) 445
Eco47I GGWCC 1 cut(s) 167
EcoRI GAATTC 2 cut(s) 1151, 1220
EcoRII CCWGG 1 cut(s) 183
EcoT14I CCWWGG 2 cut(s) 262, 961
EcoT22I ATGCAT 2 cut(s) 808, 832
EcoT38I GRGCYC 2 cut(s) 273, 891
ErhI CCWWGG 2 cut(s) 262, 961
Esp3I CGTCTC 2 cut(s) 86, 1236
FaeI CATG 4 cut(s) 382, 743, 870, 1337
FatI CATG 4 cut(s) 378, 739, 866, 1333
FauI CCCGC 1 cut(s) 102
FbaI TGATCA 3 cut(s) 34, 631, 742
Fnu4HI GCNGC 2 cut(s) 693, 843
FokI GGATG 3 cut(s) 395, 839, 1277
FriOI GRGCYC 2 cut(s) 273, 891
Fsp4HI GCNGC 2 cut(s) 693, 843
FspBI CTAG 3 cut(s) 480, 519, 677
GluI GCNGC 2 cut(s) 693, 843
HaeIII GGCC 3 cut(s) 222, 517, 610
HapII CCGG 4 cut(s) 89, 249, 444, 617
Hin1II CATG 4 cut(s) 382, 743, 870, 1337
HinfI GANTC 7 cut(s) 21, 228, 240, 509, 659, 757, 1076
HpaII CCGG 4 cut(s) 89, 249, 444, 617
HphI GGTGA 4 cut(s) 140, 422, 450, 1083
Hpy166II GTNNAC 2 cut(s) 144, 167
Hpy8I GTNNAC 2 cut(s) 144, 167
HpyAV CCTTC 3 cut(s) 283, 980, 1065
HpyCH4III ACNGT 6 cut(s) 128, 392, 397, 592, 724, 797
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 6 cut(s) 713, 806, 830, 872, 971, 1045
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
HpyF3I CTNAG 1 cut(s) 1012
HpySE526I ACGT 1 cut(s) 351
Hsp92II CATG 4 cut(s) 382, 743, 870, 1337
Kpn2I TCCGGA 1 cut(s) 616
Ksp22I TGATCA 3 cut(s) 34, 631, 742
LmnI GCTCC 2 cut(s) 258, 358
Lsp1109I GCAGC 2 cut(s) 679, 829
LweI GCATC 3 cut(s) 817, 881, 1032
MaeI CTAG 3 cut(s) 480, 519, 677
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 5 cut(s) 352, 698, 791, 1035, 1089
MboII GAAGA 8 cut(s) 184, 187, 190, 249, 1157, 1160, 1178, 1334
MfeI CAATTG 1 cut(s) 312
MflI RGATCY 4 cut(s) 4, 187, 245, 1195
MhlI GDGCHC 3 cut(s) 54, 273, 891
MluCI AATT 6 cut(s) 147, 312, 564, 626, 1151, 1220
MlyI GAGTC 2 cut(s) 751, 1085
MmeI TCCRAC 1 cut(s) 32
Mph1103I ATGCAT 2 cut(s) 808, 832
MroI TCCGGA 1 cut(s) 616
MseI TTAA 3 cut(s) 210, 1031, 1209
MslI CAYNNNNRTG 1 cut(s) 867
MspCI CTTAAG 1 cut(s) 209
MspI CCGG 4 cut(s) 89, 249, 444, 617
MspR9I CCNGG 2 cut(s) 185, 444
MunI CAATTG 1 cut(s) 312
Mva1269I GAATGC 1 cut(s) 713
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 49
NciI CCSGG 1 cut(s) 444
NlaIII CATG 4 cut(s) 382, 743, 870, 1337
NlaIV GGNNCC 4 cut(s) 6, 247, 260, 1197
NmuCI GTSAC 5 cut(s) 352, 698, 791, 1035, 1089
NsiI ATGCAT 2 cut(s) 808, 832
NspI RCATGY 1 cut(s) 870
OliI CACNNNNGTG 1 cut(s) 867
PagI TCATGA 2 cut(s) 739, 1333
PceI AGGCCT 2 cut(s) 517, 610
PciI ACATGT 1 cut(s) 866
PctI GAATGC 1 cut(s) 713
PfeI GAWTC 5 cut(s) 21, 228, 240, 509, 659
PflFI GACNNNGTC 2 cut(s) 532, 592
PkrI GCNGC 2 cut(s) 694, 844
PleI GAGTC 2 cut(s) 751, 1084
PpsI GAGTC 2 cut(s) 751, 1084
PscI ACATGT 1 cut(s) 866
PshBI ATTAAT 1 cut(s) 1031
PsiI TTATAA 1 cut(s) 569
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 4 cut(s) 6, 247, 260, 1197
PspPI GGNCC 1 cut(s) 167
PsuI RGATCY 4 cut(s) 4, 187, 245, 1195
PsyI GACNNNGTC 2 cut(s) 532, 592
RsaI GTAC 8 cut(s) 125, 253, 389, 394, 685, 819, 1276, 1290
RsaNI GTAC 8 cut(s) 124, 252, 388, 393, 684, 818, 1275, 1289
RseI CAYNNNNRTG 1 cut(s) 867
SaqAI TTAA 3 cut(s) 210, 1031, 1209
SatI GCNGC 2 cut(s) 693, 843
Sau96I GGNCC 1 cut(s) 167
ScaI AGTACT 1 cut(s) 394
SchI GAGTC 2 cut(s) 751, 1085
ScrFI CCNGG 2 cut(s) 185, 444
SduI GDGCHC 3 cut(s) 54, 273, 891
SetI ASST 6 cut(s) 45, 60, 135, 338, 354, 508
SfaNI GCATC 3 cut(s) 817, 881, 1032
SinI GGWCC 1 cut(s) 167
SmiMI CAYNNNNRTG 1 cut(s) 867
SmlI CTYRAG 2 cut(s) 209, 1059
SmoI CTYRAG 2 cut(s) 209, 1059
Sse9I AATT 6 cut(s) 147, 312, 564, 626, 1151, 1220
SseBI AGGCCT 2 cut(s) 517, 610
SsiI CCGC 2 cut(s) 109, 170
SspMI CTAG 3 cut(s) 480, 519, 677
StuI AGGCCT 2 cut(s) 517, 610
StyD4I CCNGG 2 cut(s) 183, 442
StyI CCWWGG 2 cut(s) 262, 961
TaaI ACNGT 6 cut(s) 128, 392, 397, 592, 724, 797
TaiI ACGT 1 cut(s) 354
TaqI TCGA 4 cut(s) 177, 235, 433, 717
TasI AATT 6 cut(s) 147, 312, 564, 626, 1151, 1220
TatI WGTACW 4 cut(s) 387, 392, 817, 1288
TfiI GAWTC 5 cut(s) 21, 228, 240, 509, 659
Tru1I TTAA 3 cut(s) 210, 1031, 1209
Tru9I TTAA 3 cut(s) 210, 1031, 1209
TscAI CASTG 6 cut(s) 37, 90, 597, 727, 802, 1320
TseFI GTSAC 5 cut(s) 352, 698, 791, 1035, 1089
TseI GCWGC 2 cut(s) 692, 842
Tsp45I GTSAC 5 cut(s) 352, 698, 791, 1035, 1089
TspDTI ATGAA 4 cut(s) 52, 367, 1158, 1233
TspGWI ACGGA 1 cut(s) 371
TspRI CASTG 6 cut(s) 37, 90, 597, 727, 802, 1320
Tth111I GACNNNGTC 2 cut(s) 532, 592
Vha464I CTTAAG 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 167
VspI ATTAAT 1 cut(s) 1031
XapI RAATTY 2 cut(s) 1151, 1220
XbaI TCTAGA 1 cut(s) 676
XceI RCATGY 1 cut(s) 870
XspI CTAG 3 cut(s) 480, 519, 677
ZrmI AGTACT 1 cut(s) 394
Zsp2I ATGCAT 2 cut(s) 808, 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.