Rh3BG170600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000371
Physical Location & Seq
Forward (+)
14627460 .. 14632608
5149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG170600.1

Sequence Viewer

Length: 240 bp
ATGGCAAAATCCGTTTGCTCTACCACAGTTGTTCTCGTGGTTGCTTTCCTTCTGATTGCTTCATTTGGTTTCTGGTTCCACCCAACTGACGATGAGCTCATCCGATACTACCTGTATATGAAGAACAAGGTGAGCGAGGGTGACGATGACTCTGAAGCGGTGGGGACTCTGAAGTGGCGGCAACGGTGGTGCCGGAGTTTGACCTCTACGGTGAGACCGAGCCCTGGAACATTTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.98

Weight (kDa)

7.79

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 189
AciI CCGC 2 cut(s) 158, 178
AcuI CTGAAG 2 cut(s) 174, 191
AfiI CCNNNNNNNGG 1 cut(s) 224
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 1 cut(s) 208
AsuHPI GGTGA 3 cut(s) 142, 152, 223
BanI GGYRCC 1 cut(s) 189
BanII GRGCYC 2 cut(s) 99, 224
BauI CACGAG 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 99
BciT130I CCWGG 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 208
BisI GCNGC 1 cut(s) 179
BlsI GCNGC 1 cut(s) 180
Bme1390I CCNGG 1 cut(s) 225
BmiI GGNNCC 2 cut(s) 77, 191
BmrFI CCNGG 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 208
BsaJI CCNNGG 1 cut(s) 223
Bsc4I CCNNNNNNNGG 1 cut(s) 224
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 224
BshNI GGYRCC 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 99
BsiSI CCGG 1 cut(s) 193
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 178
Bso31I GGTCTC 1 cut(s) 208
Bsp1286I GDGCHC 2 cut(s) 99, 224
BspACI CCGC 2 cut(s) 158, 178
BspLI GGNNCC 2 cut(s) 77, 191
BspT107I GGYRCC 1 cut(s) 189
BspTNI GGTCTC 1 cut(s) 208
BssECI CCNNGG 1 cut(s) 223
BssSI CACGAG 1 cut(s) 35
Bst2BI CACGAG 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 3 cut(s) 28, 186, 211
BstF5I GGATG 1 cut(s) 99
BstMAI GTCTC 1 cut(s) 208
BstNI CCWGG 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 223
BtsCI GGATG 1 cut(s) 99
CviJI RGCY 2 cut(s) 97, 222
CviKI_1 RGCY 2 cut(s) 97, 222
Ecl136II GAGCTC 1 cut(s) 97
Eco24I GRGCYC 2 cut(s) 99, 224
Eco31I GGTCTC 1 cut(s) 208
Eco53kI GAGCTC 1 cut(s) 97
Eco57I CTGAAG 2 cut(s) 174, 191
EcoICRI GAGCTC 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 223
EcoT38I GRGCYC 2 cut(s) 99, 224
FaiI YATR 2 cut(s) 117, 119
FaqI GGGAC 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 179
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 2 cut(s) 99, 224
Fsp4HI GCNGC 1 cut(s) 179
GluI GCNGC 1 cut(s) 179
HapII CCGG 1 cut(s) 193
HinfI GANTC 2 cut(s) 149, 166
HpaII CCGG 1 cut(s) 193
HphI GGTGA 3 cut(s) 142, 152, 223
Hpy188I TCNGA 4 cut(s) 54, 104, 154, 171
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 3 cut(s) 28, 186, 211
LpnPI CCDG 4 cut(s) 58, 125, 206, 210
MaeIII GTNAC 1 cut(s) 140
MboII GAAGA 1 cut(s) 133
MhlI GDGCHC 2 cut(s) 99, 224
MlyI GAGTC 2 cut(s) 143, 160
MnlI CCTC 2 cut(s) 130, 214
MspI CCGG 1 cut(s) 193
MspR9I CCNGG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 225
NlaIV GGNNCC 2 cut(s) 77, 191
NmuCI GTSAC 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 215
PkrI GCNGC 1 cut(s) 180
PleI GAGTC 2 cut(s) 143, 160
PpsI GAGTC 2 cut(s) 143, 160
Psp124BI GAGCTC 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 2 cut(s) 77, 191
SacI GAGCTC 1 cut(s) 99
SatI GCNGC 1 cut(s) 179
SchI GAGTC 2 cut(s) 143, 160
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 2 cut(s) 99, 224
SetI ASST 4 cut(s) 99, 114, 132, 206
SgeI CNNG 9 cut(s) 47, 49, 85, 124, 139, 148, 205, 231, 236
SsiI CCGC 2 cut(s) 158, 178
SstI GAGCTC 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 223
TaaI ACNGT 3 cut(s) 28, 186, 211
TaqII GACCGA 1 cut(s) 232
TauI GCSGC 1 cut(s) 181
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 2 cut(s) 51, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.