Prupe.1G063700_v2.0.a1
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000371
Physical Location & Seq
Forward (+)
4536126 .. 4536752
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G063700.1

Sequence Viewer

Length: 627 bp
ATGGCTAATTCCGGAGTGACACAACTGGTCGGCTTCCGGTTCCGCCCCACGGACCAAGAAATCATCGGCTTCTTTCTCTACAAGATGGTGGTGGAGAAAAGGCCTCTGACTTCGATGCCGCCATACAACAAGGTTATCCACAAGTGCAACCTCTTCGGCAACAAACGAGAACCCTCAGAAATTTGGAGAGATTACGGAGGAGATCAACTTAAGGATCAATACTTGTACTTCTTTTCTGAGCTCCAGAGAAATGATTTGCCCATCCAACGCAAGACTGGCCTCGGTACTTGGAGCGAAACCGTAACCTACCAAAATGTTAAGGAGGAGGTGGATGAGATTAATGGAAAATCTAATCTTGATGTTATAGGGAGAAAAAGGAAATTCCGGTATGAGAACGGGAGTACTTCGGAGGACCACGCCGGCTGGCTTTTGGATGAACATAGCATTTTCAAAAAGGCTTGCAAGAATGGCACAAGTAGTAATTGCTATGATTTTGACGTTGTGATTTGTCGGCTGAGAAGGAAGGGCAATGTGGACAAAGTTCGGGAAAAAGAGGAAGTGCTGTTCTCAAGATCAATCACACAAGAAGATGAAAAGAGATCAATCTACAAAGGAGATGAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

209

Amino Acids

24.36

Weight (kDa)

8.56

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 11
AciI CCGC 2 cut(s) 43, 119
AclWI GGATC 1 cut(s) 222
AcsI RAATTY 2 cut(s) 180, 380
AfaI GTAC 3 cut(s) 227, 286, 403
AfiI CCNNNNNNNGG 1 cut(s) 49
AflII CTTAAG 1 cut(s) 209
AgsI TTSAA 1 cut(s) 451
AloI GAACNNNNNNTCC 2 cut(s) 548, 580
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
Alw21I GWGCWC 1 cut(s) 243
AlwI GGATC 1 cut(s) 222
Aor13HI TCCGGA 1 cut(s) 11
AoxI GGCC 2 cut(s) 101, 277
ApoI RAATTY 2 cut(s) 180, 380
AseI ATTAAT 1 cut(s) 339
AspS9I GGNCC 2 cut(s) 52, 412
AvaII GGWCC 2 cut(s) 52, 412
BanII GRGCYC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 243
BccI CCATC 2 cut(s) 79, 269
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BfrI CTTAAG 1 cut(s) 209
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
BmcAI AGTACT 1 cut(s) 403
Bme18I GGWCC 2 cut(s) 52, 412
BmgT120I GGNCC 2 cut(s) 52, 412
BmiI GGNNCC 1 cut(s) 41
BmsI GCATC 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 553
BsaJI CCNNGG 2 cut(s) 48, 280
BsaWI WCCGGW 3 cut(s) 11, 36, 384
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse118I RCCGGY 1 cut(s) 419
Bse1I ACTGG 2 cut(s) 30, 280
Bse3DI GCAATG 1 cut(s) 535
BseAI TCCGGA 1 cut(s) 11
BseDI CCNNGG 2 cut(s) 48, 280
BseGI GGATG 3 cut(s) 261, 337, 439
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMI GCAATG 1 cut(s) 535
BseMII CTCAG 3 cut(s) 189, 228, 506
BseNI ACTGG 2 cut(s) 30, 280
BseRI GAGGAG 2 cut(s) 213, 338
BshFI GGCC 2 cut(s) 103, 279
BsiHKAI GWGCWC 1 cut(s) 243
BsiSI CCGG 4 cut(s) 12, 37, 385, 420
BslI CCNNNNNNNGG 1 cut(s) 49
BsnI GGCC 2 cut(s) 103, 279
Bsp1286I GDGCHC 1 cut(s) 243
Bsp13I TCCGGA 1 cut(s) 11
Bsp143I GATC 4 cut(s) 202, 214, 572, 599
BspACI CCGC 2 cut(s) 43, 119
BspANI GGCC 2 cut(s) 103, 279
BspCNI CTCAG 3 cut(s) 188, 229, 507
BspEI TCCGGA 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 41
BspPI GGATC 1 cut(s) 222
BspTI CTTAAG 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 535
BsrFI RCCGGY 1 cut(s) 419
BsrI ACTGG 2 cut(s) 30, 280
BssAI RCCGGY 1 cut(s) 419
BssECI CCNNGG 2 cut(s) 48, 280
BssMI GATC 4 cut(s) 202, 214, 572, 599
Bst4CI ACNGT 1 cut(s) 301
Bst6I CTCTTC 1 cut(s) 158
BstAFI CTTAAG 1 cut(s) 209
BstC8I GCNNGC 3 cut(s) 421, 425, 460
BstDEI CTNAG 3 cut(s) 175, 237, 515
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 3 cut(s) 261, 337, 439
BstKTI GATC 4 cut(s) 205, 217, 575, 602
BstMBI GATC 4 cut(s) 202, 214, 572, 599
BstMWI GCNNNNNNNGC 2 cut(s) 276, 468
BsuRI GGCC 2 cut(s) 103, 279
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 3 cut(s) 261, 337, 439
Cac8I GCNNGC 3 cut(s) 421, 425, 460
Cfr10I RCCGGY 1 cut(s) 419
Cfr13I GGNCC 2 cut(s) 52, 412
Csp6I GTAC 3 cut(s) 226, 285, 402
CviQI GTAC 3 cut(s) 226, 285, 402
DdeI CTNAG 3 cut(s) 175, 237, 515
DpnI GATC 4 cut(s) 204, 216, 574, 601
DpnII GATC 4 cut(s) 202, 214, 572, 599
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
EciI GGCGGA 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 241
Eco147I AGGCCT 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 243
Eco47I GGWCC 2 cut(s) 52, 412
Eco53kI GAGCTC 1 cut(s) 241
EcoICRI GAGCTC 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 243
FaiI YATR 5 cut(s) 124, 365, 390, 441, 489
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 3 cut(s) 248, 344, 446
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 119
GluI GCNGC 1 cut(s) 119
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 2 cut(s) 103, 279
HapII CCGG 4 cut(s) 12, 37, 385, 420
HpaII CCGG 4 cut(s) 12, 37, 385, 420
Hpy166II GTNNAC 1 cut(s) 535
Hpy188I TCNGA 4 cut(s) 108, 178, 238, 409
Hpy188III TCNNGA 5 cut(s) 12, 244, 356, 545, 570
Hpy8I GTNNAC 1 cut(s) 535
HpyAV CCTTC 2 cut(s) 513, 517
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4IV ACGT 1 cut(s) 498
HpyCH4V TGCA 2 cut(s) 147, 462
HpyF10VI GCNNNNNNNGC 2 cut(s) 276, 468
HpyF3I CTNAG 3 cut(s) 175, 237, 515
HpySE526I ACGT 1 cut(s) 498
Kpn2I TCCGGA 1 cut(s) 11
KroI GCCGGC 1 cut(s) 419
KroNI GCCGGC 1 cut(s) 421
Kzo9I GATC 4 cut(s) 202, 214, 572, 599
LmnI GCTCC 2 cut(s) 246, 291
LpnPI CCDG 8 cut(s) 11, 25, 50, 257, 261, 398, 409, 433
LweI GCATC 1 cut(s) 105
MaeII ACGT 1 cut(s) 498
MaeIII GTNAC 2 cut(s) 16, 301
MalI GATC 4 cut(s) 204, 216, 574, 601
MboI GATC 4 cut(s) 202, 214, 572, 599
MboII GAAGA 2 cut(s) 145, 599
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 4 cut(s) 7, 180, 380, 481
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 9 cut(s) 114, 161, 184, 191, 290, 316, 319, 403, 547
MroI TCCGGA 1 cut(s) 11
MroNI GCCGGC 1 cut(s) 419
MseI TTAA 3 cut(s) 210, 318, 339
MspCI CTTAAG 1 cut(s) 209
MspI CCGG 4 cut(s) 12, 37, 385, 420
MwoI GCNNNNNNNGC 2 cut(s) 276, 468
NaeI GCCGGC 1 cut(s) 421
NdeII GATC 4 cut(s) 202, 214, 572, 599
NgoMIV GCCGGC 1 cut(s) 419
NlaIV GGNNCC 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 16
PceI AGGCCT 1 cut(s) 103
PdiI GCCGGC 1 cut(s) 421
PkrI GCNGC 1 cut(s) 120
PshBI ATTAAT 1 cut(s) 339
Psp124BI GAGCTC 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 41
PspPI GGNCC 2 cut(s) 52, 412
RsaI GTAC 3 cut(s) 227, 286, 403
RsaNI GTAC 3 cut(s) 226, 285, 402
SacI GAGCTC 1 cut(s) 243
SaqAI TTAA 3 cut(s) 210, 318, 339
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 4 cut(s) 202, 214, 572, 599
Sau96I GGNCC 2 cut(s) 52, 412
ScaI AGTACT 1 cut(s) 403
SduI GDGCHC 1 cut(s) 243
SetI ASST 6 cut(s) 135, 153, 243, 308, 330, 501
SfaNI GCATC 1 cut(s) 105
SinI GGWCC 2 cut(s) 52, 412
SmlI CTYRAG 2 cut(s) 209, 568
SmoI CTYRAG 2 cut(s) 209, 568
Sse9I AATT 4 cut(s) 7, 180, 380, 481
SseBI AGGCCT 1 cut(s) 103
SsiI CCGC 2 cut(s) 43, 119
SstI GAGCTC 1 cut(s) 243
StuI AGGCCT 1 cut(s) 103
TaaI ACNGT 1 cut(s) 301
TaiI ACGT 1 cut(s) 501
TaqI TCGA 1 cut(s) 113
TasI AATT 4 cut(s) 7, 180, 380, 481
TatI WGTACW 2 cut(s) 225, 401
TauI GCSGC 1 cut(s) 121
Tru1I TTAA 3 cut(s) 210, 318, 339
Tru9I TTAA 3 cut(s) 210, 318, 339
TseFI GTSAC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 450, 606
TspGWI ACGGA 2 cut(s) 65, 210
Vha464I CTTAAG 1 cut(s) 209
VpaK11BI GGWCC 2 cut(s) 52, 412
VspI ATTAAT 1 cut(s) 339
XapI RAATTY 2 cut(s) 180, 380
XcmI CCANNNNNNNNNTGG 1 cut(s) 272
ZrmI AGTACT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.